PI0005466 (gene) Melon (PI 482460) v1

Overview


Name	PI0005466
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr12: 10325157 .. 10325381 (+)
RNA-Seq Expression	PI0005466
Synteny	PI0005466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTTCGCTTGAACCACTGGGAACTCAAGAGGAGATAGTCCCCAAAGATATTCTGTGTGTCCTAGAGAGGTATAGCGACGTGATGTCTGATAGTTTGCCCAAAGCTCTACCGCAAAGAAGAATAATTGATCATGAGATCAAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTATCGTATGGCACCACCAGAGTTGGCGAAACTTCGAAAATAG

mRNA sequence

ATGGCCATTTCGCTTGAACCACTGGGAACTCAAGAGGAGATAGTCCCCAAAGATATTCTGTGTGTCCTAGAGAGGTATAGCGACGTGATGTCTGATAGTTTGCCCAAAGCTCTACCGCAAAGAAGAATAATTGATCATGAGATCAAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTATCGTATGGCACCACCAGAGTTGGCGAAACTTCGAAAATAG

Coding sequence (CDS)

ATGGCCATTTCGCTTGAACCACTGGGAACTCAAGAGGAGATAGTCCCCAAAGATATTCTGTGTGTCCTAGAGAGGTATAGCGACGTGATGTCTGATAGTTTGCCCAAAGCTCTACCGCAAAGAAGAATAATTGATCATGAGATCAAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTATCGTATGGCACCACCAGAGTTGGCGAAACTTCGAAAATAG

Protein sequence

MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKNAYRMAPPELAKLRK

Homology

[Close]

BLAST of PI0005466 vs. ExPASy TrEMBL
Match: A0A5A7V6G0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43900G00020 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-24
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI LE L    E VPKDILCVLE+YSDVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 326 MAIPLESLENPGETVPKDILCVLEKYSDVMPDSLPKSLPPRRMIDHEIELLPGAKPPAKN 385

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 386 AYRMAPPELAELRK 399

[Close]

BLAST of PI0005466 vs. ExPASy TrEMBL
Match: A0A5A7T9P9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00860 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVMSDSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 541 MAIPLKSSENSGETVPKEIMRVLEKYRDVMSDSLPKSLPPRRMIDHEIELVPGAKPPAKN 600

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 601 AYRMAPPELAELRK 614

[Close]

BLAST of PI0005466 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 671 AYRMAPPELAELRK 684

[Close]

BLAST of PI0005466 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 671 AYRMAPPELAELRK 684

[Close]

BLAST of PI0005466 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 671 AYRMAPPELAELRK 684

[Close]

BLAST of PI0005466 vs. NCBI nr
Match: KAA0062527.1 (uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI LE L    E VPKDILCVLE+YSDVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 326 MAIPLESLENPGETVPKDILCVLEKYSDVMPDSLPKSLPPRRMIDHEIELLPGAKPPAKN 385

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 386 AYRMAPPELAELRK 399

[Close]

BLAST of PI0005466 vs. NCBI nr
Match: KAA0039608.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVMSDSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 541 MAIPLKSSENSGETVPKEIMRVLEKYRDVMSDSLPKSLPPRRMIDHEIELVPGAKPPAKN 600

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 601 AYRMAPPELAELRK 614

[Close]

BLAST of PI0005466 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 607 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 666

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 667 AYRMAPPELAELRK 680

[Close]

BLAST of PI0005466 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 671 AYRMAPPELAELRK 684

[Close]

BLAST of PI0005466 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MAISLEPLGTQEEIVPKDILCVLERYSDVMSDSLPKALPQRRIIDHEIKLIPGAKPPAKN 60
           MAI L+      E VPK+I+ VLE+Y DVM DSLPK+LP RR+IDHEI+L+PGAKPPAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYRMAPPELAKLRK 75
           AYRMAPPELA+LRK
Sbjct: 671 AYRMAPPELAELRK 684

The following BLAST results are available for this feature:

BLAST of PI0005466 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6G0	3.7e-24	79.73	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T9P9	3.9e-21	72.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]
A0A5D3C4R1	1.5e-20	71.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.5e-20	71.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	1.5e-20	71.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of PI0005466 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062527.1	7.7e-24	79.73	uncharacterized protein E6C27_scaffold43900G00020 [Cucumis melo var. makuwa]	[more]
KAA0039608.1	8.0e-21	72.97	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	3.0e-20	71.62	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	3.0e-20	71.62	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	3.0e-20	71.62	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0005466 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005466.1	PI0005466.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0003743	translation initiation factor activity