PI0005256 (gene) Melon (PI 482460) v1

Overview


Name	PI0005256
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 26041264 .. 26041548 (-)
RNA-Seq Expression	PI0005256
Synteny	PI0005256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGATCAATATGCAATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCTGCCATACAGATTGAATCTCCCACGGAGTCTTCTACTCCACCTAGGCCTTCGGCCAATCTTGTTTGTCCTTCTGGTGGAGTCACTCAAATGAGGCCTCCTACCTCTCCTCAATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAACGATTCATACCAAGACCCGAGATCAAAACATATTTTCAAAAATAA

mRNA sequence

ATGAGTGCAGATCAATATGCAATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCTGCCATACAGATTGAATCTCCCACGGAGTCTTCTACTCCACCTAGGCCTTCGGCCAATCTTGTTTGTCCTTCTGGTGGAGTCACTCAAATGAGGCCTCCTACCTCTCCTCAATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAACGATTCATACCAAGACCCGAGATCAAAACATATTTTCAAAAATAA

Coding sequence (CDS)

ATGAGTGCAGATCAATATGCAATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCTGCCATACAGATTGAATCTCCCACGGAGTCTTCTACTCCACCTAGGCCTTCGGCCAATCTTGTTTGTCCTTCTGGTGGAGTCACTCAAATGAGGCCTCCTACCTCTCCTCAATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAACGATTCATACCAAGACCCGAGATCAAAACATATTTTCAAAAATAA

Protein sequence

MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK

Homology

[Close]

BLAST of PI0005256 vs. ExPASy TrEMBL
Match: A0A5D3BM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00180 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
          MSADQYAMD GFTTVTRS++RSS+I+IES TESSTPPRPSANL+ P GG  QMRPP SP 
Sbjct: 1  MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 61 SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
          SN ESSTPPTTYSQ VTP+KRF+PRPEIK+YFQK
Sbjct: 61 SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQK 94

[Close]

BLAST of PI0005256 vs. ExPASy TrEMBL
Match: A0A5A7URC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00720 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-32
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           M++DQYAMD  FTTVTRS++RSS+I+  SPTESSTPPRP ANL+ PSGGV QMRPPTSP 
Sbjct: 33  MNSDQYAMDLEFTTVTRSRSRSSSIRTGSPTESSTPPRPLANLIRPSGGVVQMRPPTSPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVTP+KRF+PRP+IK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQK 126

[Close]

BLAST of PI0005256 vs. ExPASy TrEMBL
Match: A0A5D3CKX1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00620 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           MSADQY MD GFTTV RS++RSS+I+ ESPTESSTPPRP ANL+ PSG V QMRPP SP 
Sbjct: 33  MSADQYEMDLGFTTVIRSRSRSSSIRTESPTESSTPPRPLANLIRPSGRVVQMRPPASPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVTP+KRF+PRP+IK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQK 126

[Close]

BLAST of PI0005256 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.9e-31
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           +SADQYAMD GFTTVTR  +RS  I I SPTESSTPPRPS NL+ PS GV QMRPP SP 
Sbjct: 33  LSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVTP+KRF+PRPEIK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQK 126

[Close]

BLAST of PI0005256 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.9e-30
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           MSA QY MD GFT VTRS++R S+I I SPTESSTPPRPS NL+ PSGGV QMRPP SP 
Sbjct: 33  MSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVT +KRF+PRPEIK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQK 126

[Close]

BLAST of PI0005256 vs. NCBI nr
Match: KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
          MSADQYAMD GFTTVTRS++RSS+I+IES TESSTPPRPSANL+ P GG  QMRPP SP 
Sbjct: 1  MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 61 SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
          SN ESSTPPTTYSQ VTP+KRF+PRPEIK+YFQK
Sbjct: 61 SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQK 94

[Close]

BLAST of PI0005256 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           M++DQYAMD  FTTVTRS++RSS+I+  SPTESSTPPRP ANL+ PSGGV QMRPPTSP 
Sbjct: 33  MNSDQYAMDLEFTTVTRSRSRSSSIRTGSPTESSTPPRPLANLIRPSGGVVQMRPPTSPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVTP+KRF+PRP+IK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQK 126

[Close]

BLAST of PI0005256 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-31
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           MSADQY MD GFTTV RS++RSS+I+ ESPTESSTPPRP ANL+ PSG V QMRPP SP 
Sbjct: 33  MSADQYEMDLGFTTVIRSRSRSSSIRTESPTESSTPPRPLANLIRPSGRVVQMRPPASPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVTP+KRF+PRP+IK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQK 126

[Close]

BLAST of PI0005256 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           +SADQYAMD GFTTVTR  +RS  I I SPTESSTPPRPS NL+ PS GV QMRPP SP 
Sbjct: 33  LSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQMRPPASPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVTP+KRF+PRPEIK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQK 126

[Close]

BLAST of PI0005256 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-29
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MSADQYAMDFGFTTVTRSKARSSAIQIESPTESSTPPRPSANLVCPSGGVTQMRPPTSPQ 60
           MSA QY MD GFT VTRS++R S+I I SPTESSTPPRPS NL+ PSGGV QMRPP SP 
Sbjct: 33  MSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPS 92

Query: 61  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQK 95
           SN ESSTPPTTYSQAVT +KRF+PRPEIK+YFQK
Sbjct: 93  SNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQK 126

The following BLAST results are available for this feature:

BLAST of PI0005256 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BM67	5.6e-33	80.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7URC1	6.2e-32	78.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CKX1	1.4e-31	78.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM80	8.9e-31	78.72	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
E5GCE6	9.9e-30	77.66	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of PI0005256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066421.1	1.2e-32	80.85	hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086...	[more]
KAA0056175.1	1.3e-31	78.72	hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa]	[more]
TYK11076.1	2.8e-31	78.72	hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]	[more]
KAA0043136.1	1.8e-30	78.72	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative...	[more]
ADN34145.1	2.0e-29	77.66	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of PI0005256 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005256.1	PI0005256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding