PI0005236 (gene) Melon (PI 482460) v1

Overview


Name	PI0005236
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Histone H2A
Location	chr08: 16257716 .. 16260995 (+)
RNA-Seq Expression	PI0005236
Synteny	PI0005236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATTTTATACATTTTAATTGGAAAAAAATATAATTAAAAAAATACAGCGATGTGTCCATGTCATCACGAACACGGCGTGTGTCATTCACTTTCCATTTTATTTTTCTCATTTCATCAAGAAAATGTCATCTCCGTTGAAACCCCGTCGTTAACCTCCCTCGCCTTTTCACCTTTTATTTTTTCTGTTTGCTTCCCGAGAAAATTTCTCTTCCAATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGTAGAAGAGGTGGTGGCGGTCCTAAGAAGAAACCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTGAATATATACTACTACTACTTCGTTCTTCTCAGTTTGTCACTTTCGATTTACTTAATTTAGGGTTTCTTTTTTCAGTTTGTGTTAGAGGATTTTACATGTTTTTATTGTGTGTGTGAAATCCGATCGTTTATTCAATGGATTACATGCTTGGATTGAAGTGCATTTTCTTTATTTCTTGTTAATGGCTTAGAATTTGATTTTCTTAGCTCTTTCTCTTAATATATAAATTCCCCAATTTAATGGTATTAGGTTTTTTATTATTATTATTATTTATGTAATCTATTCTCTGATTTCTCTATGTGGTTTTGTGTATATAGACAAGTTCATTCTAAGTTTTCAGACAATCTAGAAAGGAAAATATCACCTAAAGTTTTTTCTTTTTTTTTTTAAATATAGAATTTTAAGGTCTGTTTGATATCGATTTCACTTTCTTTAGCATTGGTTTGATAACCATTTTTTTTTTTTAAAAGTTTTTAAATTAAGCTTATAAACACTCCATTAATTTTTAAGGTCTCGTTTGGTAACCACATTTTGTTGTTGGTCCTTGGTTTTTTAAAATTAAGCTAATTGACTCCCATATTCTTATAATGGTATGCATTATTTTTAAGTATGTCAAGTTTAAAATCTTAGTCAAATTCTAAAAACAAAAACTAGGTTCTTTAGTTTCAAATTTTAGCTTGGTTTTCTTAAAAAGTAGCCGACAAAACTTAGAAACCAATAAATGAAAGTGGGATTTATAGGTATAATTTTCAAAAACCAAATAGTTACAAAAAAAAAAAAGGAACTTAAATTTTCTGTTGGGTTCTTACTTTTTACCAATATTTTAAAAATTATTCTCAAGTATTTAATTTGAAAAATAAGTTATTTTGAAAAAAAATTAGAGTGGTTTACCACTCATAACAACTGTTGAAGTGTGTTTTCAACGGTTTTTATCCAAAAATTTTAAATAAAAATGAGCCTTTGAAAAACACTTAAACAGAGACCCTAAGTCAAAATTTAGAAATTAAAACAATAGTGGTTTTAATTTTATTTTATTATTATTATTTCTTTTACATTCTTTTATATGAATTCAACTCCTGTATTTAAAAGATGTAATAGTTTTAATTTTCAAAAAAAAAATGAAAAACGAAATGGATAGCAAATAGAAACTCAATTTTCTGTATTTGAATTTACGATAGTTTCATCTTTCTTTTATATTACTGTTTTCATCTTTTTGTAAAGAGACACTTAAATCTCTAGTTAAGTTTAAATCTCTAGTTAAGTTCTTAAAACAAATACAAACTAATAGAACGTGGATAACACAAACACTTTTATTTCAGGGTTTTTTTTCTAAAGATCGTTGTTTGGTAGAGATTTTAGAGTTTGAAAAAGCGTACAAATGTTGTTTATCAATCAAACACTGTTTTAAATAACAATTCATTTTTTCAAATATTTAAATAGTTTATATTAGCGAATCTGAAAAATTAGAAATTCAAACTGAATAGATTCTCAACTTCCCTCGGTATCCGCTTTGCCTTGCTTTTATCACTCTTTTCCGCTGTCCTTTATGTCCTGATTCTGATGCTTTATCCAAACGACTTTGGGTTGATTTTGGCTTCATAGAAATTGCTTTTTTTTTTTAATTAATTAATTAATTTATTTATTTTTATTTTATTTCAACAATTGCGGGTCGGATATCAAACTATATCAATCTTTAAGATGGTAAATTGATGTCTTTGTTTAGTAAGCTATGCTTGGATTGACACCTAAATTCATTCTAAAATAGAACTTTGAATTAGAAATTTTGATCATCCTTTGTGGTCTAGTAGAATTCTTTTAATTTATTCACCGACTGAATCTTACACACAAGTGTTTGATGATAATACAAGAATTGATGTTGTATACTGAACTATTGGGTTATTGTGTTAAGGATATCTATAAAAGATGAAATATATGTATCACTAACTTCCAAACTTGAATATATTGATGTCGTGGTTGACCTAGTGACCTAGTGGTAAACAAAGGTCATGAGTTTGATAAAAGTCTAGGAGGGATGAGTTCAATTTCTAGTGACTACCTACCTAGGGTTTAATATCCTACGAGTTCCTTGATATCCAAATATTATAAGGCAAGACAGGTTGTCTAATGAGATTAGTCGATATGCGTGTAAGCTGGTTTCAGAAACTCACAAATATATAGATAGCATATGAGTAAGCATTCTATCACCTATCAGTTTAAGACTGCATTATACTTTAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTGCTCTTGGCTGTGAGGAATGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATCGCTCATGGTGGGGTGCTTCCGAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGCGGCGGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGAGTACCAAGTCCCCCAAGAAGGCCTAGCTTAGCTTCTTGTATGCTCCACAACTACTCAATTTCTGTATTTAGATTGGAGCTATCTTCATGTTTAGGACTGCTTTTATCTGTTTGTGCCTTTATGTTGTAGGATATTCCTTTGTGTTATCACAATTCTCAGTTGAAATGATGTAAGATTTAACATCTCTTGTGAATGTTTGTATCTTCTCCACTGATGGGTTAATGTAGGCTTTATGAGATGGATTGAATAATTGGATGGATAAAATTGGACCACATATTATCCCTATTGGGTGTTTGGCAACTTGGTTAATTTGGGAGAGTTGGATTGGGTGTGTAAAAAAAAACTTACTGTTTTGTTCATCGATAATTAAAGAGGTTTATTACCTTTTTAGTCA

mRNA sequence

GTAATTTTATACATTTTAATTGGAAAAAAATATAATTAAAAAAATACAGCGATGTGTCCATGTCATCACGAACACGGCGTGTGTCATTCACTTTCCATTTTATTTTTCTCATTTCATCAAGAAAATGTCATCTCCGTTGAAACCCCGTCGTTAACCTCCCTCGCCTTTTCACCTTTTATTTTTTCTGTTTGCTTCCCGAGAAAATTTCTCTTCCAATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGTAGAAGAGGTGGTGGCGGTCCTAAGAAGAAACCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTGCTCTTGGCTGTGAGGAATGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATCGCTCATGGTGGGGTGCTTCCGAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGCGGCGGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGAGTACCAAGTCCCCCAAGAAGGCCTAGCTTAGCTTCTTGTATGCTCCACAACTACTCAATTTCTGTATTTAGATTGGAGCTATCTTCATGTTTAGGACTGCTTTTATCTGTTTGTGCCTTTATGTTGTAGGATATTCCTTTGTGTTATCACAATTCTCAGTTGAAATGATGTAAGATTTAACATCTCTTGTGAATGTTTGTATCTTCTCCACTGATGGGTTAATGTAGGCTTTATGAGATGGATTGAATAATTGGATGGATAAAATTGGACCACATATTATCCCTATTGGGTGTTTGGCAACTTGGTTAATTTGGGAGAGTTGGATTGGGTGTGTAAAAAAAAACTTACTGTTTTGTTCATCGATAATTAAAGAGGTTTATTACCTTTTTAGTCA

Coding sequence (CDS)

ATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGTAGAAGAGGTGGTGGCGGTCCTAAGAAGAAACCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTGCTCTTGGCTGTGAGGAATGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATCGCTCATGGTGGGGTGCTTCCGAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGCGGCGGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGAGTACCAAGTCCCCCAAGAAGGCCTAG

Protein sequence

MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAAKEPKSPSKSTKSPKKA

Homology

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BLAST of PI0005236 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-67
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAA-AKEPKSPSKSTKSPKKA 153
           INP+LLPKKSE+AA+  K PKSPSK+TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of PI0005236 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-66
Identity = 138/154 (89.61%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+G K KKG AG R GGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRY+QRVG+GAPVY
Sbjct: 1   MDTGAKLKKG-AGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAA--KEPKSPSKSTKSPKKA 153
           INPVLLPKK+E+AAAA  KEPKSP+K+TKSPKKA
Sbjct: 121 INPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of PI0005236 vs. ExPASy Swiss-Prot
Match: A2Y5G8 (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 135/160 (84.38%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MDSGGKA--KKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAP 60
           M+ G K   K G  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERAAA-----AKEPKSPSK-STKSPKKA 153
           PNINPVLLPKK+  AAA      K PKSP K +TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of PI0005236 vs. ExPASy Swiss-Prot
Match: Q6L500 (Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 135/160 (84.38%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MDSGGKA--KKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAP 60
           M+ G K   K G  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERAAA-----AKEPKSPSK-STKSPKKA 153
           PNINPVLLPKK+  AAA      K PKSP K +TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

[Close]

BLAST of PI0005236 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-62
Identity = 130/152 (85.53%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M++ GKAKKGF GR+  GGP+KK V+RSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   METAGKAKKGFGGRK--GGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           INPVLLPKK+    AAKEPKSPSK+ KSPKKA
Sbjct: 121 INPVLLPKKTAE-KAAKEPKSPSKAGKSPKKA 149

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BLAST of PI0005236 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           INPVLLPKKSERAAAAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

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BLAST of PI0005236 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.9e-71
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKSTKSPKKA 153
           INPVLLPKKSERA  AAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of PI0005236 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.9e-71
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKSTKSPKKA 153
           INPVLLPKKSERA  AAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of PI0005236 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           INPVLLPKKSERAAA KEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of PI0005236 vs. ExPASy TrEMBL
Match: A0A6A4LE10 (Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 140/152 (92.11%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           INPVLLPKK+E+ AAAKEPKSPSK+TKSPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

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BLAST of PI0005236 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 7.7e-71
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           INPVLLPKKSERAAAAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of PI0005236 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKSTKSPKKA 153
           INPVLLPKKSERA  AAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of PI0005236 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 274.6 bits (701), Expect = 5.0e-70
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           INPVLLPKKSERAAA KEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of PI0005236 vs. NCBI nr
Match: KAE9455642.1 (hypothetical protein C3L33_12460, partial [Rhododendron williamsianum])

HSP 1 Score: 261.2 bits (666), Expect = 5.7e-66
Identity = 140/152 (92.11%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           INPVLLPKK+E+ AAAKEPKSPSK+TKSPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

[Close]

BLAST of PI0005236 vs. NCBI nr
Match: XP_038881325.1 (probable histone H2A.4 [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 9.8e-66
Identity = 142/153 (92.81%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+G KAKKG AGR+GGGGPKKKPVSRSVKAGLQFPVGRI RYLK GRYS+RVGTGAPVY
Sbjct: 1   MDTGDKAKKGVAGRKGGGGPKKKPVSRSVKAGLQFPVGRIDRYLKEGRYSRRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAAKEPKSPSKSTKSPKKA 153
           INPVLL KKSERA AAAKEPKS SKST+SPKKA
Sbjct: 121 INPVLLRKKSERAVAAAKEPKSSSKSTRSPKKA 153

[Close]

BLAST of PI0005236 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-68
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAA-AKEPKSPSKSTKSPKKA 153
           INP+LLPKKSE+AA+  K PKSPSK+TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of PI0005236 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 240.7 bits (613), Expect = 7.5e-64
Identity = 136/177 (76.84%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAA-AKEPKSPSKSTKSPKKA 153
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+AA+  K PKSPSK+TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of PI0005236 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 208.0 bits (528), Expect = 5.4e-54
Identity = 114/152 (75.00%), Postives = 127/152 (83.55%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+S GK KK F GR+  G PK K VS+S+KAGLQFPVGRI R+LK GRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAKEPKSPSKSTKSPKKA 153
           IN VLLPKKS  A    E K+     KSPKKA
Sbjct: 121 INSVLLPKKS--ATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of PI0005236 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-50
Identity = 109/147 (74.15%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 6   KAKKGFAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVL 65
           K  +G  GR+  GG +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVL
Sbjct: 9   KPTRGAGGRK--GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 125
           EYLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVL
Sbjct: 69  EYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVL 128

Query: 126 LPKKSERAAAAKEPKSPSKSTKSPKKA 153
           LPKKS  +++  E  S   +TKSPKKA
Sbjct: 129 LPKKSTASSSQAEKAS---ATKSPKKA 150

[Close]

BLAST of PI0005236 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 174.5 bits (441), Expect = 6.6e-44
Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 13  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEV 72
           G++ G G  KK  SRS KAGLQFPVGRI R+LK G+Y++RVG GAPVYLAAVLEYLAAEV
Sbjct: 5   GKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 64

Query: 73  LELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSER 132
           LELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+  
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS 124

Query: 133 AAAAKE 139
           +   +E
Sbjct: 125 SKPTEE 130

The following BLAST results are available for this feature:

BLAST of PI0005236 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	9.2e-67	88.89	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	2.1e-66	89.61	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
A2Y5G8	1.1e-62	84.38	Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3...	[more]
Q6L500	1.1e-62	84.38	Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 ...	[more]
P19177	2.3e-62	85.53	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]

BLAST of PI0005236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXF2	3.7e-71	97.37	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A5A7U1I6	4.9e-71	97.39	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	4.9e-71	97.39	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A6J1CR43	2.4e-70	97.37	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A6A4LE10	2.8e-66	92.11	Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE...	[more]

BLAST of PI0005236 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142082.1	7.7e-71	97.37	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_008447608.1	1.0e-70	97.39	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_022143711.1	5.0e-70	97.37	histone H2A [Momordica charantia]	[more]
KAE9455642.1	5.7e-66	92.11	hypothetical protein C3L33_12460, partial [Rhododendron williamsianum]	[more]
XP_038881325.1	9.8e-66	92.81	probable histone H2A.4 [Benincasa hispida]	[more]

BLAST of PI0005236 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	6.5e-68	88.89	histone H2A 12	[more]
AT5G02560.2	7.5e-64	76.84	histone H2A 12	[more]
AT5G59870.1	5.4e-54	75.00	histone H2A 6	[more]
AT5G27670.1	3.6e-50	74.15	histone H2A 7	[more]
AT4G27230.1	6.6e-44	71.43	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 23..45 score: 69.23 coord: 81..95 score: 73.78 coord: 109..127 score: 75.79 coord: 52..67 score: 86.43 coord: 67..80 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 8.3E-78 score: 274.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 25..129 e-value: 7.49029E-65 score: 191.78
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..98 e-value: 2.0E-12 score: 47.6
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 101..134 e-value: 2.6E-18 score: 65.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..138 e-value: 1.1E-62 score: 211.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 9..147
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 9..147
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005236.1	PI0005236.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity