PI0005155 (gene) Melon (PI 482460) v1

Overview
NamePI0005155
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 31
Locationchr07: 3539097 .. 3542233 (-)
RNA-Seq ExpressionPI0005155
SyntenyPI0005155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCATATTTCATTGTTCTACGTTGGGTCATCGATTTCAATCGCTTGCTGCTCTAATTTGAATGTAGCCATTGTTGAGAGCTTTGAAGGGTATCTCCGTATCGCTCCACTACGAATCTCGTAACTTCTTCTTAATTTTTGGGTTCAATTTGAACTTCTATTGCACGATATTTGAACTTCGACTGGCCAGATTTAATGGCGTCCAATCATGGATTAAAAGAAGAAGCAGCTGATAACCCATCATCGTAAGTTTCTTTCTCTTTTTCATTCTCGTGTTCTATCATTTTCCCTCCTTTGTCTCTCTTTACCCAATTCTTCTTTCATTTTGTATATCGCTTTAATTCTTCATTTTTGTTTTGTTGCTGAGGGATTGGTTTATCGGGCTCATTGTGAATTGATCAATTTTCCCTTTCTGTTTGGTCAATTATTACCAGGCCTACGAATGTTTACAAAGATCCCGATGACGGACGGCAGCGGTTCTTGCTCGAATTGGAGTTTGTTCAATGCCTTGCCAATCCTACCTACATTCATTGTAAGTTGCAAAATTTAGGGTTTCTTTATAGGGGGTTAGGCTTATTTCTTATGCTTGAAACTTCAGCTTGAAGGGTGGAAAAAACTATTGGATGTTCCAAAATGAAGGAAATTTGAAAATTCAGCGTTTATCCTAAGATTTGCTTTCGAACTTTTTCAGTTGAATTTAGTTTCAATTTGGATTACTAATGAGCTAACTGTGCATGAAAGTGTGCTTCACATGAAAAGCAATGAATACGAAAGTAAATTCTACGTATTTCTTCTAATGATAAAGTGGATTGAACTTATGTGTATAATAAATGATGTAAAATTAAATAATCCCTTGGAGTGGGTTCAAGTTATGATGGCCATCTACCAATGATTTAATATCGTATGGGTTTCCTTGATATCAATATAGTATTGTTATAGTTGTCCCATTCGATCAGTTGAGGTCTAACAAGCTAGCTTGAACAGAACATCCATGGATGTGAAAGAAAAAGAACTGTTAGCCTGAATTTTTATCGTATAATATCTCATGTGAACCATGTGTTTTATTTGAATTTTGAAAATGATTTTCTCTGTTGCATTTTCCTGTGAAGTTGTGATTTTTTATCGACCAGTGTGAAGAAGGACAATGAAAGATCAGATTTTGACATCTAGAACCAAAGGTCATTCTATTGCATCTTCTTGAGTTAGAGTAGGGCCTAGATGAAACTTTTTCTTTTATGCTGGTTGCCTGACTACTGCTGGAGCAGCGACCTACTGTTTTTACTACATAATTAACTTATAATTTACCAGAGATCAGTGTTCGTTTGATCTTTCTGCCTGTTAAGAAAAGCTGGCGTTGTACAATTCTTACATATAGTGAATTTCCTAGAATTTTATCCTTTTGATGATATGCTACAGTATCTTACTGAAGTACGTTTCTGAAGTTGGCACTTACATTTTTTGTGATAGCATCTTCACATACACATTTCTTCCTAACGAATGATGTATTTGCAAATTGATATTGAAATGTTGGAACAAATGCTTTTTGTGCTCTCAGTTTCGGTTGCTGATCATCTAGTTTTATACAGATCTGGCGCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATCAAGTTTATAATGTGAGTCAGTTCTTTCCCTGAACTGAAGAATGAGAACTGATTGTGCTTTTGGTATTGACTTCAATGTTGTTTCTAGGTACCCTCATTGTCTTTTTTTTCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGTTAGCTTCTGTTCTTTTTTGATCAACTTCTCTTTCAAGATCGGAGAATAAATATTTAGTTGGATAGTGAATTTTTTCTGTGCTCGCAACTATGCACATCTCTGATAAATGCTCCATAGACTTATATGTTTCGTTTCAGTTTATAATGAGATGAAAAAATTCTAAACTGTCTCCCATGTCCATCGATTCAAGAGAGATATTTGTTGCTTCTTTCCAAATGGTTTGCGGATATGTGATATTTCACCTTTTCCTTTTTCTTAGTATTTTAACAGTTGCATCATTTGGAATTTCTTAGGAATTGGCACACAGACAACAATTTTACTTCTGGAAGAACTATAGGAACAATCGATTGAAACACATTTTGCCTCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTTTCTGCTCCACCTCAAGCACCTGTACCGGCCCCAACCCCAGCCTCCACTATGGCAGCTTCACCCGCTACACCTGCCCTTTCTCCCATGCAGTATGGTATTCCACCTGGTCCTGGACTTCCAAAGAACGACATGAAGAGTGCAGGAATTGATCGACGAAAGAGAAAACACGTAATTTGTCACATATCATTTGTTTTCTTAAGTTATCAATGTACTCTACTTATTAGGTTAGAAGATACACCTCTTCCTTTATACCTTCAAATTTTCATTTACTTCTTTTGTGTTTTGACAGGAAAGAAGTATGACGTAGTTGGTTTCATTAGTCAAAACTAGGGTGGATGCTGGAGCAGCTCATTAGGTAAATCTGCATACAGTGAAAATTAAAGTTCAAAGGTGGTGCCTTTCATAAGCTTTCCAAGAGTTATCCTTCACTTCGGGTTGTGAAAAATCTCTCTCTCTCATGCTGGCGAACACGAGCGACATGAGCTTGATGTTTATGGGTTTGTGTAATATATCCTTTGATGAAGCTCTGGATGACATTGGTATAAAATATTGCTAAAGAATCCTTAAAAATTTTGGTTTATCCATATGTTTGGCTGTTATAGCTATCTATACATTGGTAAGCAGTTCCTTTGACTATCCTTTTATCTCCATCTATGTTAGACAATTTTTTGGAGCAGCATGAAATCCTATGTAGGTATGGTGAGGAGTGAGGACTAATGTGAATATAACAAAATATTACTGTCTATCAGTGATATATTACTATCATCTATCGCTGATAGATACAAACAGATGCCTACCATGTTTATTTATCAGCGTCTATCATATTTTCCTATATTTGTAAATATTTTTAAGAGTTTGTTATTTAAAACAATTTTTGTTATATATTTTATTGAT

mRNA sequence

GGGCATATTTCATTGTTCTACGTTGGGTCATCGATTTCAATCGCTTGCTGCTCTAATTTGAATGTAGCCATTGTTGAGAGCTTTGAAGGGTATCTCCGTATCGCTCCACTACGAATCTCGTAACTTCTTCTTAATTTTTGGGTTCAATTTGAACTTCTATTGCACGATATTTGAACTTCGACTGGCCAGATTTAATGGCGTCCAATCATGGATTAAAAGAAGAAGCAGCTGATAACCCATCATCGCCTACGAATGTTTACAAAGATCCCGATGACGGACGGCAGCGGTTCTTGCTCGAATTGGAGTTTGTTCAATGCCTTGCCAATCCTACCTACATTCATTATCTGGCGCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATCAAGTTTATAATGTACCCTCATTGTCTTTTTTTTCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGAATTGGCACACAGACAACAATTTTACTTCTGGAAGAACTATAGGAACAATCGATTGAAACACATTTTGCCTCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTTTCTGCTCCACCTCAAGCACCTGTACCGGCCCCAACCCCAGCCTCCACTATGGCAGCTTCACCCGCTACACCTGCCCTTTCTCCCATGCAGTATGGTATTCCACCTGGTCCTGGACTTCCAAAGAACGACATGAAGAGTGCAGGAATTGATCGACGAAAGAGAAAACACGAAAGAAGTATGACGTAGTTGGTTTCATTAGTCAAAACTAGGGTGGATGCTGGAGCAGCTCATTAGGTAAATCTGCATACAGTGAAAATTAAAGTTCAAAGGTGGTGCCTTTCATAAGCTTTCCAAGAGTTATCCTTCACTTCGGGTTGTGAAAAATCTCTCTCTCTCATGCTGGCGAACACGAGCGACATGAGCTTGATGTTTATGGGTTTGTGTAATATATCCTTTGATGAAGCTCTGGATGACATTGGTATAAAATATTGCTAAAGAATCCTTAAAAATTTTGGTTTATCCATATGTTTGGCTGTTATAGCTATCTATACATTGGTAAGCAGTTCCTTTGACTATCCTTTTATCTCCATCTATGTTAGACAATTTTTTGGAGCAGCATGAAATCCTATGTAGGTATGGTGAGGAGTGAGGACTAATGTGAATATAACAAAATATTACTGTCTATCAGTGATATATTACTATCATCTATCGCTGATAGATACAAACAGATGCCTACCATGTTTATTTATCAGCGTCTATCATATTTTCCTATATTTGTAAATATTTTTAAGAGTTTGTTATTTAAAACAATTTTTGTTATATATTTTATTGAT

Coding sequence (CDS)

ATGGCGTCCAATCATGGATTAAAAGAAGAAGCAGCTGATAACCCATCATCGCCTACGAATGTTTACAAAGATCCCGATGACGGACGGCAGCGGTTCTTGCTCGAATTGGAGTTTGTTCAATGCCTTGCCAATCCTACCTACATTCATTATCTGGCGCAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATCAAGTTTATAATGTACCCTCATTGTCTTTTTTTTCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGAATTGGCACACAGACAACAATTTTACTTCTGGAAGAACTATAGGAACAATCGATTGAAACACATTTTGCCTCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTTTCTGCTCCACCTCAAGCACCTGTACCGGCCCCAACCCCAGCCTCCACTATGGCAGCTTCACCCGCTACACCTGCCCTTTCTCCCATGCAGTATGGTATTCCACCTGGTCCTGGACTTCCAAAGAACGACATGAAGAGTGCAGGAATTGATCGACGAAAGAGAAAACACGAAAGAAGTATGACGTAG

Protein sequence

MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPPGPGLPKNDMKSAGIDRRKRKHERSMT
Homology
BLAST of PI0005155 vs. ExPASy Swiss-Prot
Match: Q8VYB1 (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana OX=3702 GN=MED31 PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.3e-73
Identity = 148/203 (72.91%), Postives = 161/203 (79.31%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEP    PPV+  P   +P P P++T A S   PALSPMQY    
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPVA--PSTSLP-PAPSATAALS---PALSPMQY---- 180

Query: 181 GPGLPKND---MKSAGIDRRKRK 201
              L KND   M + GIDRRKRK
Sbjct: 181 NNMLSKNDTRNMGATGIDRRKRK 193

BLAST of PI0005155 vs. ExPASy Swiss-Prot
Match: Q54NI7 (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum OX=44689 GN=med31 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = 0

Query: 31  RFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFL 90
           RF++ELEF+QCL+NP Y++YLAQNRY +D+AF+ YL YLQYW++PEY KFI+YP  L+FL
Sbjct: 55  RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFL 114

Query: 91  ELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRL 128
           +LLQ   FR  + H  + +  H QQFY W+ YRNNR+
Sbjct: 115 DLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRM 151

BLAST of PI0005155 vs. ExPASy Swiss-Prot
Match: A0JNN3 (Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus OX=9913 GN=MED31 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-24
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 84  PHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114

BLAST of PI0005155 vs. ExPASy Swiss-Prot
Match: Q9CXU1 (Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus OX=10090 GN=Med31 PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 4.5e-24
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 84  PHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114

BLAST of PI0005155 vs. ExPASy Swiss-Prot
Match: Q9Y3C7 (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens OX=9606 GN=MED31 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-24
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKY 69

Query: 84  PHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114

BLAST of PI0005155 vs. ExPASy TrEMBL
Match: A0A5D3D0Y1 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00280 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.3e-110
Identity = 201/206 (97.57%), Postives = 202/206 (98.06%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGL EEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPA T+AASPAT ALSPMQYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180

Query: 181 GPGLPKNDMKSAGIDRRKRKHERSMT 207
           GPGLPKNDMK AGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

BLAST of PI0005155 vs. ExPASy TrEMBL
Match: A0A1S3BY12 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo OX=3656 GN=LOC103494449 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.3e-110
Identity = 201/206 (97.57%), Postives = 202/206 (98.06%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGL EEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPA T+AASPAT ALSPMQYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180

Query: 181 GPGLPKNDMKSAGIDRRKRKHERSMT 207
           GPGLPKNDMK AGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

BLAST of PI0005155 vs. ExPASy TrEMBL
Match: A0A0A0KZ88 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis sativus OX=3659 GN=Csa_4G025160 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 197/206 (95.63%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGLKEE ADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLKEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPV+APPQA VPAPT A  MAASPA PALSP+QYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPIQYGIPP 180

Query: 181 GPGLPKNDMKSAGIDRRKRKHERSMT 207
           GPGLPKNDMK AGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

BLAST of PI0005155 vs. ExPASy TrEMBL
Match: A0A6J1CJB2 (Mediator of RNA polymerase II transcription subunit 31 OS=Momordica charantia OX=3673 GN=LOC111011520 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.2e-98
Identity = 189/208 (90.87%), Postives = 192/208 (92.31%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGL EEA+DNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASNHGLNEEASDNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPH LFFLELLQN+NFRNAMAHP NKEL+HRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHSLFFLELLQNANFRNAMAHPANKELSHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASP-ATPALSPMQYGIP 180
           NYRNNRLKHILPRPLPEPAALPPPVS PPQAPVPA T A  MAASP   PALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSVPPQAPVPAAT-APGMAASPVGAPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKSAGIDRRKRK-HERSMT 207
           PG GL KNDMKS GIDRRKRK HERSMT
Sbjct: 181 PGSGLAKNDMKSGGIDRRKRKQHERSMT 207

BLAST of PI0005155 vs. ExPASy TrEMBL
Match: A0A6J1JRK2 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucurbita maxima OX=3661 GN=LOC111487170 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.2e-97
Identity = 185/206 (89.81%), Postives = 192/206 (93.20%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASN+GL EEAAD+PSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCLFFLELLQN+NFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASP-ATPALSPMQYGIP 180
           NYRNNRLKHILPR  PEPAALPPPVSAP QAPVP   PA  MAASP ATPALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPA--MAASPAATPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKSAGIDRRKRKHERSM 206
           PG GL KNDMK+A IDRRKRKHERSM
Sbjct: 181 PGSGLSKNDMKNAAIDRRKRKHERSM 204

BLAST of PI0005155 vs. NCBI nr
Match: XP_008453845.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis melo] >KAA0044690.1 mediator of RNA polymerase II transcription subunit 31 [Cucumis melo var. makuwa] >TYK16894.1 mediator of RNA polymerase II transcription subunit 31 [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 8.8e-110
Identity = 201/206 (97.57%), Postives = 202/206 (98.06%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGL EEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPA T+AASPAT ALSPMQYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180

Query: 181 GPGLPKNDMKSAGIDRRKRKHERSMT 207
           GPGLPKNDMK AGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

BLAST of PI0005155 vs. NCBI nr
Match: XP_004146891.1 (mediator of RNA polymerase II transcription subunit 31 [Cucumis sativus] >KGN53186.1 hypothetical protein Csa_014598 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 2.4e-107
Identity = 197/206 (95.63%), Postives = 199/206 (96.60%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGLKEE ADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLKEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPV+APPQA VPAPT A  MAASPA PALSP+QYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPIQYGIPP 180

Query: 181 GPGLPKNDMKSAGIDRRKRKHERSMT 207
           GPGLPKNDMK AGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

BLAST of PI0005155 vs. NCBI nr
Match: XP_038880162.1 (mediator of RNA polymerase II transcription subunit 31 [Benincasa hispida])

HSP 1 Score: 387.1 bits (993), Expect = 9.4e-104
Identity = 197/206 (95.63%), Postives = 198/206 (96.12%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASN GL EEAA NPSSPT+VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNPGLNEEAAGNPSSPTSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPA-TPALSPMQYGIP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAP PA  MAASPA TPALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPA--MAASPAGTPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKSAGIDRRKRKHERSM 206
           PG GLPKNDMKSAGIDRRKRKHERSM
Sbjct: 181 PGSGLPKNDMKSAGIDRRKRKHERSM 204

BLAST of PI0005155 vs. NCBI nr
Match: XP_022141008.1 (mediator of RNA polymerase II transcription subunit 31 [Momordica charantia])

HSP 1 Score: 368.2 bits (944), Expect = 4.5e-98
Identity = 189/208 (90.87%), Postives = 192/208 (92.31%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGL EEA+DNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASNHGLNEEASDNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPH LFFLELLQN+NFRNAMAHP NKEL+HRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHSLFFLELLQNANFRNAMAHPANKELSHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASP-ATPALSPMQYGIP 180
           NYRNNRLKHILPRPLPEPAALPPPVS PPQAPVPA T A  MAASP   PALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSVPPQAPVPAAT-APGMAASPVGAPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKSAGIDRRKRK-HERSMT 207
           PG GL KNDMKS GIDRRKRK HERSMT
Sbjct: 181 PGSGLAKNDMKSGGIDRRKRKQHERSMT 207

BLAST of PI0005155 vs. NCBI nr
Match: XP_022990254.1 (mediator of RNA polymerase II transcription subunit 31-like [Cucurbita maxima] >XP_023535403.1 mediator of RNA polymerase II transcription subunit 31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.4 bits (934), Expect = 6.5e-97
Identity = 185/206 (89.81%), Postives = 192/206 (93.20%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASN+GL EEAAD+PSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNYGLNEEAADSPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCLFFLELLQN+NFR+AMAHP NKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRSAMAHPANKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASP-ATPALSPMQYGIP 180
           NYRNNRLKHILPR  PEPAALPPPVSAP QAPVP   PA  MAASP ATPALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRSFPEPAALPPPVSAPSQAPVPTTAPA--MAASPAATPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKSAGIDRRKRKHERSM 206
           PG GL KNDMK+A IDRRKRKHERSM
Sbjct: 181 PGSGLSKNDMKNAAIDRRKRKHERSM 204

BLAST of PI0005155 vs. TAIR 10
Match: AT5G19910.1 (SOH1 family protein )

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-74
Identity = 148/203 (72.91%), Postives = 161/203 (79.31%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPASTMAASPATPALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEP    PPV+  P   +P P P++T A S   PALSPMQY    
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPVA--PSTSLP-PAPSATAALS---PALSPMQY---- 180

Query: 181 GPGLPKND---MKSAGIDRRKRK 201
              L KND   M + GIDRRKRK
Sbjct: 181 NNMLSKNDTRNMGATGIDRRKRK 193

BLAST of PI0005155 vs. TAIR 10
Match: AT5G19910.2 (SOH1 family protein )

HSP 1 Score: 260.8 bits (665), Expect = 9.5e-70
Identity = 148/233 (63.52%), Postives = 161/233 (69.10%), Query Frame = 0

Query: 1   MASNHGLKEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNK------------ 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NK            
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKWFKMLGYWCFWN 120

Query: 121 ------------------ELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQ 180
                             ELAHRQQFY+WKNYRNNRLKHILPRPLPEP    PPV+  P 
Sbjct: 121 VFWGLVEFRVSLVQNLAYELAHRQQFYYWKNYRNNRLKHILPRPLPEPVPPQPPVA--PS 180

Query: 181 APVPAPTPASTMAASPATPALSPMQYGIPPGPGLPKND---MKSAGIDRRKRK 201
             +P P P++T A S   PALSPMQY       L KND   M + GIDRRKRK
Sbjct: 181 TSLP-PAPSATAALS---PALSPMQY----NNMLSKNDTRNMGATGIDRRKRK 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8VYB12.3e-7372.91Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana O... [more]
Q54NI71.3e-3158.76Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium... [more]
A0JNN33.4e-2448.57Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus OX=9913 GN=... [more]
Q9CXU14.5e-2448.57Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus OX=10090 ... [more]
Q9Y3C75.9e-2448.57Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens OX=9606 G... [more]
Match NameE-valueIdentityDescription
A0A5D3D0Y14.3e-11097.57Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo var. maku... [more]
A0A1S3BY124.3e-11097.57Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo OX=3656 G... [more]
A0A0A0KZ881.2e-10795.63Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis sativus OX=365... [more]
A0A6J1CJB22.2e-9890.87Mediator of RNA polymerase II transcription subunit 31 OS=Momordica charantia OX... [more]
A0A6J1JRK23.2e-9789.81Mediator of RNA polymerase II transcription subunit 31 OS=Cucurbita maxima OX=36... [more]
Match NameE-valueIdentityDescription
XP_008453845.18.8e-11097.57PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis melo]... [more]
XP_004146891.12.4e-10795.63mediator of RNA polymerase II transcription subunit 31 [Cucumis sativus] >KGN531... [more]
XP_038880162.19.4e-10495.63mediator of RNA polymerase II transcription subunit 31 [Benincasa hispida][more]
XP_022141008.14.5e-9890.87mediator of RNA polymerase II transcription subunit 31 [Momordica charantia][more]
XP_022990254.16.5e-9789.81mediator of RNA polymerase II transcription subunit 31-like [Cucurbita maxima] >... [more]
Match NameE-valueIdentityDescription
AT5G19910.11.7e-7472.91SOH1 family protein [more]
AT5G19910.29.5e-7063.52SOH1 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 30..122
e-value: 2.4E-35
score: 120.4
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31coord: 9..202
IPR038089Mediator of RNA polymerase II, subunit Med31 superfamilyGENE3D1.10.10.1340Mediator of RNA polymerase II, submodule Med31 (Soh1)coord: 17..119
e-value: 4.2E-41
score: 140.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..206
NoneNo IPR availablePANTHERPTHR13186:SF1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31coord: 9..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005155.1PI0005155.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0070847 core mediator complex
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity