PI0005022 (gene) Melon (PI 482460) v1

Overview


Name	PI0005022
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr02: 20208056 .. 20208399 (-)
RNA-Seq Expression	PI0005022
Synteny	PI0005022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACTTCACCCGAATTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCACAGATGCCAGGGTTGTGGAGAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTAAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGGTTCCCTTGAAGCACATGAACAAAGAAAGAAAAATAGACAACAAGAAGTCATAGAGGAGGCCTTACAAACAAAGATGACCATCAACGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGTAG

mRNA sequence

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACTTCACCCGAATTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCACAGATGCCAGGGTTGTGGAGAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAAAGTCATAGAGGAGGCCTTACAAACAAAGATGACCATCAACGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGTAG

Coding sequence (CDS)

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACTTCACCCGAATTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCACAGATGCCAGGGTTGTGGAGAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAAAGTCATAGAGGAGGCCTTACAAACAAAGATGACCATCAACGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGTAG

Protein sequence

MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEESHRGGLTNKDDHQRRQGNVCTTQSRKRTW

Homology

[Close]

BLAST of PI0005022 vs. ExPASy TrEMBL
Match: A0A5D3C1S7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00390 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.3e-28
Identity = 72/112 (64.29%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIE----- 60
           MK+KESE VSDY T++QTVVNQLKRNG+T  D R+VEKILRSLTNDF+NVVCAIE     
Sbjct: 1   MKIKESEVVSDYITQVQTVVNQLKRNGKTFKDVRIVEKILRSLTNDFKNVVCAIEKLKNL 60

Query: 61  ------------ESH----------RGGLTNKDDHQRRQGNVCTTQSRKRTW 86
                       E+H          RGGLTNKDDHQRRQGNVCTTQSRK+TW
Sbjct: 61  EEMTIGELVSSLEAHELRKKKTRGPRGGLTNKDDHQRRQGNVCTTQSRKKTW 112

[Close]

BLAST of PI0005022 vs. ExPASy TrEMBL
Match: A0A2I0VED6 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028474 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1   MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEES 58
           MKMKESEGVSDY TR+QTVVNQLKRNGE LTDARVVEKILRSLTN+FENVVCAIEES
Sbjct: 99  MKMKESEGVSDYITRVQTVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEES 155

[Close]

BLAST of PI0005022 vs. ExPASy TrEMBL
Match: A0A2I0X5W4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca023640 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEES 58
           MKMKESEGVSDY TR+Q VVNQLKRNGE LTDARVVEKILRSLTN+FENVVCAIEES
Sbjct: 73  MKMKESEGVSDYITRVQAVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEES 129

[Close]

BLAST of PI0005022 vs. ExPASy TrEMBL
Match: A0A5D3CND8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold818G00050 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.1e-19
Identity = 59/106 (55.66%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 10  SDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEESHR---------- 69
           +D   + Q VVNQLK NG+TL DARVVEKI  SLTNDFENVVCA EES            
Sbjct: 44  ADRVKQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQ 103

Query: 70  --------------------GGLTNKDDHQRRQGNVCTTQSRKRTW 86
                                G+TNKDDHQRRQGNVCTTQSRKRTW
Sbjct: 104 IPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQSRKRTW 149

[Close]

BLAST of PI0005022 vs. ExPASy TrEMBL
Match: A0A151R7V8 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040157 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEES 58
          MKMKESEGVSDY TR+QTVVNQL +NGETLTD RVVEKILRSLT+ FENVVCAIEES
Sbjct: 1  MKMKESEGVSDYITRVQTVVNQLNQNGETLTDVRVVEKILRSLTDSFENVVCAIEES 57

[Close]

BLAST of PI0005022 vs. NCBI nr
Match: KAA0052859.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04366.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-27
Identity = 72/112 (64.29%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIE----- 60
           MK+KESE VSDY T++QTVVNQLKRNG+T  D R+VEKILRSLTNDF+NVVCAIE     
Sbjct: 1   MKIKESEVVSDYITQVQTVVNQLKRNGKTFKDVRIVEKILRSLTNDFKNVVCAIEKLKNL 60

Query: 61  ------------ESH----------RGGLTNKDDHQRRQGNVCTTQSRKRTW 86
                       E+H          RGGLTNKDDHQRRQGNVCTTQSRK+TW
Sbjct: 61  EEMTIGELVSSLEAHELRKKKTRGPRGGLTNKDDHQRRQGNVCTTQSRKKTW 112

[Close]

BLAST of PI0005022 vs. NCBI nr
Match: PKU61774.1 (hypothetical protein MA16_Dca028474 [Dendrobium catenatum])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1   MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEES 58
           MKMKESEGVSDY TR+QTVVNQLKRNGE LTDARVVEKILRSLTN+FENVVCAIEES
Sbjct: 99  MKMKESEGVSDYITRVQTVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEES 155

[Close]

BLAST of PI0005022 vs. NCBI nr
Match: PKU83305.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEES 58
           MKMKESEGVSDY TR+Q VVNQLKRNGE LTDARVVEKILRSLTN+FENVVCAIEES
Sbjct: 73  MKMKESEGVSDYITRVQAVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEES 129

[Close]

BLAST of PI0005022 vs. NCBI nr
Match: KAA0060771.1 (polyprotein [Cucumis melo var. makuwa] >TYK13387.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 59/106 (55.66%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 10  SDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEESHR---------- 69
           +D   + Q VVNQLK NG+TL DARVVEKI  SLTNDFENVVCA EES            
Sbjct: 44  ADRVKQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQ 103

Query: 70  --------------------GGLTNKDDHQRRQGNVCTTQSRKRTW 86
                                G+TNKDDHQRRQGNVCTTQSRKRTW
Sbjct: 104 IPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQSRKRTW 149

[Close]

BLAST of PI0005022 vs. NCBI nr
Match: KYP38589.1 (hypothetical protein KK1_040157 [Cajanus cajan])

HSP 1 Score: 100.1 bits (248), Expect = 9.5e-18
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MKMKESEGVSDYFTRIQTVVNQLKRNGETLTDARVVEKILRSLTNDFENVVCAIEES 58
          MKMKESEGVSDY TR+QTVVNQL +NGETLTD RVVEKILRSLT+ FENVVCAIEES
Sbjct: 1  MKMKESEGVSDYITRVQTVVNQLNQNGETLTDVRVVEKILRSLTDSFENVVCAIEES 57

The following BLAST results are available for this feature:

BLAST of PI0005022 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1S7	8.3e-28	64.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2I0VED6	1.4e-19	92.98	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028474 PE=4...	[more]
A0A2I0X5W4	5.4e-19	91.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]
A0A5D3CND8	7.1e-19	55.66	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold818G00050 PE...	[more]
A0A151R7V8	4.6e-18	87.72	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040157 PE=4 SV=1	[more]

BLAST of PI0005022 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052859.1	1.7e-27	64.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
PKU61774.1	2.9e-19	92.98	hypothetical protein MA16_Dca028474 [Dendrobium catenatum]	[more]
PKU83305.1	1.1e-18	91.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]
KAA0060771.1	1.5e-18	55.66	polyprotein [Cucumis melo var. makuwa] >TYK13387.1 polyprotein [Cucumis melo var...	[more]
KYP38589.1	9.5e-18	87.72	hypothetical protein KK1_040157 [Cajanus cajan]	[more]

BLAST of PI0005022 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..57 e-value: 9.0E-14 score: 51.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..85
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 2..58
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005022.1	PI0005022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding