PI0004970 (gene) Melon (PI 482460) v1

Overview


Name	PI0004970
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr02: 80418 .. 80762 (-)
RNA-Seq Expression	PI0004970
Synteny	PI0004970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCAACTTGATTCATTATTCGGATGATGAGGATGATAATTATAAGCATAAGTGCAGTTATTCAGATGAGTGGCGGTACTCAATGAGGATGCGAGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAGCAGAAAGAGAAAGAAGAAGAAGAAGAAGAAGAGGAGTACTAATGTGGCCCACAACATAAAAACAGGTCTTCTGAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACGGCTTCCTTCCTTCCCCTTCACGTATACGTATAAGAACAACATGTTTTCGCCTCCGTATTCACTAG

mRNA sequence

ATGGGATTCAACTTGATTCATTATTCGGATGATGAGGATGATAATTATAAGCATAAGTGCAGTTATTCAGATGAGTGGCGGTACTCAATGAGGATGCGAGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAGCAGAAAGAGAAAGAAGAAGAAGAAGAAGAAGAGGAGTACTAATGTGGCCCACAACATAAAAACAGGTCTTCTGAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACGGCTTCCTTCCTTCCCCTTCACGTATACGTATAAGAACAACATGTTTTCGCCTCCGTATTCACTAG

Coding sequence (CDS)

ATGGGATTCAACTTGATTCATTATTCGGATGATGAGGATGATAATTATAAGCATAAGTGCAGTTATTCAGATGAGTGGCGGTACTCAATGAGGATGCGAGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAGCAGAAAGAGAAAGAAGAAGAAGAAGAAGAAGAGGAGTACTAATGTGGCCCACAACATAAAAACAGGTCTTCTGAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACGGCTTCCTTCCTTCCCCTTCACGTATACGTATAAGAACAACATGTTTTCGCCTCCGTATTCACTAG

Protein sequence

MGFNLIHYSDDEDDNYKHKCSYSDEWRYSMRMREKRQIFLRSYEFQLMSRKRKKKKKKKRSTNVAHNIKTGLLKIKRVIWVRLNKLKLNINNHGFLPSPSRIRIRTTCFRLRIH

Homology

[Close]

BLAST of PI0004970 vs. ExPASy TrEMBL
Match: A0A0A0LYW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560840 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 103/117 (88.03%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 1   MGFNL-IHYSDDEDD-NYKHKCSYSDEWRYSMRMREKRQIFLRSYEFQLMSRKRKKKKKK 60
           MGFNL IHYSDDEDD NYKH+CSY DEWRYSMRMREKRQIFLRSYEFQLMSRKR KKKK+
Sbjct: 1   MGFNLMIHYSDDEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60

Query: 61  KRSTNVAHNIKTGLLKIKRVIWVRLNKLKLNINNHGFLPSPSRIRI-RTTCFRLRIH 115
           KR  +V HNIKTGLLKIKRVIWVRLNKLKLNINNH FLPSPSRIRI RTT FRL IH
Sbjct: 61  KR-RSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH 116

[Close]

BLAST of PI0004970 vs. NCBI nr
Match: KGN66002.1 (hypothetical protein Csa_007656 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 3.0e-43
Identity = 103/117 (88.03%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 1   MGFNL-IHYSDDEDD-NYKHKCSYSDEWRYSMRMREKRQIFLRSYEFQLMSRKRKKKKKK 60
           MGFNL IHYSDDEDD NYKH+CSY DEWRYSMRMREKRQIFLRSYEFQLMSRKR KKKK+
Sbjct: 1   MGFNLMIHYSDDEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60

Query: 61  KRSTNVAHNIKTGLLKIKRVIWVRLNKLKLNINNHGFLPSPSRIRI-RTTCFRLRIH 115
           KR  +V HNIKTGLLKIKRVIWVRLNKLKLNINNH FLPSPSRIRI RTT FRL IH
Sbjct: 61  KR-RSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH 116

The following BLAST results are available for this feature:

BLAST of PI0004970 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYW0	1.5e-43	88.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560840 PE=4 SV=1	[more]

BLAST of PI0004970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66002.1	3.0e-43	88.03	hypothetical protein Csa_007656 [Cucumis sativus]	[more]

BLAST of PI0004970 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004970.1	PI0004970.1	mRNA