PI0004679 (gene) Melon (PI 482460) v1

Overview


Name	PI0004679
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 17051404 .. 17051835 (+)
RNA-Seq Expression	PI0004679
Synteny	PI0004679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCACCACGGTCGCCGCTGAGGCCATCGAAGTCGCATTCCCCCAATTGTCATTCTTTCAGAAGAGATGCAGCATTGGACGATGCGACATCCAGTAAACCGCCGCCCAAGCAAGATACTAGAGCCAATGTTGATGACCCACTCGCCAAGGGAAAAGAGCCTGTTCTTGGTGCAGCTGGTAAGACTGACTCTTCAGCGCCTGCCCAAAATGATCACTCCTCAGCGCCAAGTGAAGGCGAAGACATCTTTGAAATTCTTGCTAACATCGTTTGCAAGCCAACGTTTGACTACTTTGAACAAGTTTTGGCACAACAAATGGACCACGTGATGCAAATCACAGAAATGAAGCTATTACTTAAAAAGCTGCACCGCACAACGACTGAACCCCAATCGGTGCTAGCCTCCTTGGAAGAAAAATCCATCCAATAG

mRNA sequence

ATGACCTCACCACGGTCGCCGCTGAGGCCATCGAAGTCGCATTCCCCCAATTGTCATTCTTTCAGAAGAGATGCAGCATTGGACGATGCGACATCCAGTAAACCGCCGCCCAAGCAAGATACTAGAGCCAATGTTGATGACCCACTCGCCAAGGGAAAAGAGCCTGTTCTTGGTGCAGCTGGTAAGACTGACTCTTCAGCGCCTGCCCAAAATGATCACTCCTCAGCGCCAAGTGAAGGCGAAGACATCTTTGAAATTCTTGCTAACATCGTTTGCAAGCCAACGTTTGACTACTTTGAACAAGTTTTGGCACAACAAATGGACCACGTGATGCAAATCACAGAAATGAAGCTATTACTTAAAAAGCTGCACCGCACAACGACTGAACCCCAATCGGTGCTAGCCTCCTTGGAAGAAAAATCCATCCAATAG

Coding sequence (CDS)

ATGACCTCACCACGGTCGCCGCTGAGGCCATCGAAGTCGCATTCCCCCAATTGTCATTCTTTCAGAAGAGATGCAGCATTGGACGATGCGACATCCAGTAAACCGCCGCCCAAGCAAGATACTAGAGCCAATGTTGATGACCCACTCGCCAAGGGAAAAGAGCCTGTTCTTGGTGCAGCTGGTAAGACTGACTCTTCAGCGCCTGCCCAAAATGATCACTCCTCAGCGCCAAGTGAAGGCGAAGACATCTTTGAAATTCTTGCTAACATCGTTTGCAAGCCAACGTTTGACTACTTTGAACAAGTTTTGGCACAACAAATGGACCACGTGATGCAAATCACAGAAATGAAGCTATTACTTAAAAAGCTGCACCGCACAACGACTGAACCCCAATCGGTGCTAGCCTCCTTGGAAGAAAAATCCATCCAATAG

Protein sequence

MTSPRSPLRPSKSHSPNCHSFRRDAALDDATSSKPPPKQDTRANVDDPLAKGKEPVLGAAGKTDSSAPAQNDHSSAPSEGEDIFEILANIVCKPTFDYFEQVLAQQMDHVMQITEMKLLLKKLHRTTTEPQSVLASLEEKSIQ

Homology

[Close]

BLAST of PI0004679 vs. ExPASy TrEMBL
Match: A0A5A7UFG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00220 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-09
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 7   PLRPSKSHSPNCHSFRRDAALDDATSSKPPPKQDTRANVDDPLAKGKEPVLGAAGKTDSS 66
           P + +K   P      RD   +D  +   P +Q+T+ NVDDPL+K K      AG T SS
Sbjct: 319 PTKGAKESIPIVVLSERDMTRNDMATVNKPQEQETQVNVDDPLSKAKHTNPNVAGMTSSS 378

Query: 67  APAQND--HSSAPSEGEDIFEILANIVCKPTFDYFEQVLAQQMDHVMQITEMKLLLKKL 124
                D   S   SEG+++++++   +CKPTFDYFEQVL QQ  +      M  ++ K+
Sbjct: 379 MSQDKDLKESFVKSEGDNLYDLIGTTICKPTFDYFEQVLDQQTVYSADHDTMTTMIDKV 437

[Close]

BLAST of PI0004679 vs. ExPASy TrEMBL
Match: A0A5D3BEA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00170 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 7   PLRPSKSHSPNCHSFRRDAALDDATSSKPPPKQDTRANVDDPLAKGKEPVLGAAGKTDSS 66
           P + +K   P      R    +D  +   P +Q+T+ NVDDPL+K K      AG T SS
Sbjct: 319 PTKGAKESIPIVVLSERYTTRNDMATVNKPQEQETQVNVDDPLSKEKHTNPNVAGMTSSS 378

Query: 67  APAQND--HSSAPSEGEDIFEILANIVCKPTFDYFE 101
                D   S   SEG+++++++   +CKPTFDYFE
Sbjct: 379 MSQDKDLKESFVKSEGDNLYDLIGATICKPTFDYFE 414

[Close]

BLAST of PI0004679 vs. NCBI nr
Match: KAA0053237.1 (hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 7   PLRPSKSHSPNCHSFRRDAALDDATSSKPPPKQDTRANVDDPLAKGKEPVLGAAGKTDSS 66
           P + +K   P      RD   +D  +   P +Q+T+ NVDDPL+K K      AG T SS
Sbjct: 319 PTKGAKESIPIVVLSERDMTRNDMATVNKPQEQETQVNVDDPLSKAKHTNPNVAGMTSSS 378

Query: 67  APAQND--HSSAPSEGEDIFEILANIVCKPTFDYFEQVLAQQMDHVMQITEMKLLLKKL 124
                D   S   SEG+++++++   +CKPTFDYFEQVL QQ  +      M  ++ K+
Sbjct: 379 MSQDKDLKESFVKSEGDNLYDLIGTTICKPTFDYFEQVLDQQTVYSADHDTMTTMIDKV 437

[Close]

BLAST of PI0004679 vs. NCBI nr
Match: TYJ97633.1 (hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 7   PLRPSKSHSPNCHSFRRDAALDDATSSKPPPKQDTRANVDDPLAKGKEPVLGAAGKTDSS 66
           P + +K   P      R    +D  +   P +Q+T+ NVDDPL+K K      AG T SS
Sbjct: 319 PTKGAKESIPIVVLSERYTTRNDMATVNKPQEQETQVNVDDPLSKEKHTNPNVAGMTSSS 378

Query: 67  APAQND--HSSAPSEGEDIFEILANIVCKPTFDYFE 101
                D   S   SEG+++++++   +CKPTFDYFE
Sbjct: 379 MSQDKDLKESFVKSEGDNLYDLIGATICKPTFDYFE 414

The following BLAST results are available for this feature:

BLAST of PI0004679 vs.


Match Name	E-value	Identity	Description

BLAST of PI0004679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFG4	8.6e-09	36.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BEA4	2.0e-05	36.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0004679 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053237.1	1.8e-08	36.13	hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa]	[more]
TYJ97633.1	4.1e-05	36.46	hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa]	[more]

BLAST of PI0004679 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004679.1	PI0004679.1	mRNA