Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTATGCATGTGGGACGACATTCAAGACAAGATCATGCGCACTCCTTTTGAATATATCCCAAGACTTAGGCCGGAAATAGCAATGGTCCTTTCAGAAATTGCAAAGATCCATGCAGACAACCTGACTCCTCTTGAAGTATATTTGAATAGCTACCTTAAGAGGGTAGACAGCTTCAATGATGTACAATCTTCATATTCCGCACAACTGTTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATTTGTCATCAAAGAAGCCTTGACTTTGATGGACCAACTACGAGAAGATGCCAAAGTTATTCAGGAGAGGGCTACACAGTTATCCTTGGATAAGAAAGAACTGGAGAGTAGACTTCAGAGTATAAATACTAAGTCTGAACAGCTATCCATCTTATCTTGTGAGAAATATGAGGCCATAGATAGGAAAGAACTAGAAGTTGCTAAGCTTCAAGACGAAGCTAACACTCTTGAAAGCACCCTGCTATCACCGAAGAAGCCACTGAGGCCTTGGCTACGGTTCGTAAGAGCATGGAGACCGCACGCGAAGAATTCGGGAACTTCAAATGGAAGCTTTGACTTTGCCCCCCTTTGCCCCCATTTTTTTTATTCTTTTGTTGCCTTTGCTGTAAATGTGACATTTTAG
mRNA sequence
ATGGCCTTATGCATGTGGGACGACATTCAAGACAAGATCATGCGCACTCCTTTTGAATATATCCCAAGACTTAGGCCGGAAATAGCAATGGTCCTTTCAGAAATTGCAAAGATCCATGCAGACAACCTGACTCCTCTTGAAGTATATTTGAATAGCTACCTTAAGAGGGTAGACAGCTTCAATGATGTACAATCTTCATATTCCGCACAACTGTTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATTTGTCATCAAAGAAGCCTTGACTTTGATGGACCAACTACGAGAAGATGCCAAAGTTATTCAGGAGAGGGCTACACAGTTATCCTTGGATAAGAAAGAACTGGAGAGTAGACTTCAGAGTATAAATACTAAGTCTGAACAGCTATCCATCTTATCTTGTGAGAAATATGAGGCCATAGATAGGAAAGAACTAGAAGTTGCTAAGCTTCAAGACGAAGCTAACACTCTTGAAAGCACCCTGCTATCACCGAAGAAGCCACTGAGGCCTTGGCTACGGTTCGTAAGAGCATGGAGACCGCACGCGAAGAATTCGGGAACTTCAAATGGAAGCTTTGACTTTGCCCCCCTTTGCCCCCATTTTTTTTATTCTTTTGTTGCCTTTGCTGTAAATGTGACATTTTAG
Coding sequence (CDS)
ATGGCCTTATGCATGTGGGACGACATTCAAGACAAGATCATGCGCACTCCTTTTGAATATATCCCAAGACTTAGGCCGGAAATAGCAATGGTCCTTTCAGAAATTGCAAAGATCCATGCAGACAACCTGACTCCTCTTGAAGTATATTTGAATAGCTACCTTAAGAGGGTAGACAGCTTCAATGATGTACAATCTTCATATTCCGCACAACTGTTGTTGACGGATAAAACTCGTCAATTGGACGAGAAGACATTTGTCATCAAAGAAGCCTTGACTTTGATGGACCAACTACGAGAAGATGCCAAAGTTATTCAGGAGAGGGCTACACAGTTATCCTTGGATAAGAAAGAACTGGAGAGTAGACTTCAGAGTATAAATACTAAGTCTGAACAGCTATCCATCTTATCTTGTGAGAAATATGAGGCCATAGATAGGAAAGAACTAGAAGTTGCTAAGCTTCAAGACGAAGCTAACACTCTTGAAAGCACCCTGCTATCACCGAAGAAGCCACTGAGGCCTTGGCTACGGTTCGTAAGAGCATGGAGACCGCACGCGAAGAATTCGGGAACTTCAAATGGAAGCTTTGACTTTGCCCCCCTTTGCCCCCATTTTTTTTATTCTTTTGTTGCCTTTGCTGTAAATGTGACATTTTAG
Protein sequence
MALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFNDVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESRLQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLESTLLSPKKPLRPWLRFVRAWRPHAKNSGTSNGSFDFAPLCPHFFYSFVAFAVNVTF
Homology
BLAST of PI0004663 vs. ExPASy TrEMBL
Match:
A0A5A7V3X5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00140 PE=4 SV=1)
HSP 1 Score: 249.6 bits (636), Expect = 1.2e-62
Identity = 133/162 (82.10%), Postives = 144/162 (88.89%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIH + LTPLE YLNSYLKRVD+FN
Sbjct: 298 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHTNGLTPLEEYLNSYLKRVDNFN 357
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL TDK RQLDEKT I+EALTLM++LREDA VIQERA QLSL+KKELE R
Sbjct: 358 DVQSSYSAQLLSTDKARQLDEKTSAIEEALTLMEKLREDANVIQERAMQLSLEKKELERR 417
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
LQS+N +SEQLSILSCEK EAI ++ELEVAKLQDE NTLE T
Sbjct: 418 LQSLNAESEQLSILSCEKIEAIYQQELEVAKLQDEVNTLEGT 459
BLAST of PI0004663 vs. ExPASy TrEMBL
Match:
A0A5A7TT69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00570 PE=4 SV=1)
HSP 1 Score: 248.1 bits (632), Expect = 3.5e-62
Identity = 135/171 (78.95%), Postives = 147/171 (85.96%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 350 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 409
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL DK RQL+EKT IKEALTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 410 DVQSSYSAQLLSMDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTVELSLERKELEKR 469
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLESTLLSPKKPLR 173
L+SIN +SEQLSILSCEK EAID++ELEVAKLQDE NTLE TLL +K R
Sbjct: 470 LRSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLERTLLLLRKRSR 520
BLAST of PI0004663 vs. ExPASy TrEMBL
Match:
A0A5D3BW91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001500 PE=4 SV=1)
HSP 1 Score: 246.9 bits (629), Expect = 7.7e-62
Identity = 133/162 (82.10%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRT FEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 319 ALCMWEDIQDKIMRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 378
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL TDK RQL+EKT IKEALTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 379 DVQSSYSAQLLSTDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKR 438
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
LQSIN +SEQLSILSCEK EAID++ELEVAKLQDE NTLEST
Sbjct: 439 LQSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLEST 480
BLAST of PI0004663 vs. ExPASy TrEMBL
Match:
A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)
HSP 1 Score: 246.9 bits (629), Expect = 7.7e-62
Identity = 132/162 (81.48%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 728 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 787
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL TDK RQL+EKT IKE LTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 788 DVQSSYSAQLLSTDKARQLNEKTSAIKEVLTLVKQLRGDAKVIQERTAELSLERKELEKR 847
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
L+SIN +SEQLSILSCEK EAID++ELEVAKLQDE NTLEST
Sbjct: 848 LRSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLEST 889
BLAST of PI0004663 vs. ExPASy TrEMBL
Match:
A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)
HSP 1 Score: 245.7 bits (626), Expect = 1.7e-61
Identity = 133/162 (82.10%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 636 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 695
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQL LTDK RQL+EKT IKEALTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 696 DVQSSYSAQLSLTDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTVELSLERKELEKR 755
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
LQSIN +SEQLSILS EK EAID++ELEVAKLQDE NTLEST
Sbjct: 756 LQSINAESEQLSILSYEKAEAIDQQELEVAKLQDEVNTLEST 797
BLAST of PI0004663 vs. NCBI nr
Match:
KAA0060431.1 (hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK18520.1 hypothetical protein E5676_scaffold119G00140 [Cucumis melo var. makuwa])
HSP 1 Score: 249.6 bits (636), Expect = 2.5e-62
Identity = 133/162 (82.10%), Postives = 144/162 (88.89%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIH + LTPLE YLNSYLKRVD+FN
Sbjct: 298 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHTNGLTPLEEYLNSYLKRVDNFN 357
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL TDK RQLDEKT I+EALTLM++LREDA VIQERA QLSL+KKELE R
Sbjct: 358 DVQSSYSAQLLSTDKARQLDEKTSAIEEALTLMEKLREDANVIQERAMQLSLEKKELERR 417
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
LQS+N +SEQLSILSCEK EAI ++ELEVAKLQDE NTLE T
Sbjct: 418 LQSLNAESEQLSILSCEKIEAIYQQELEVAKLQDEVNTLEGT 459
BLAST of PI0004663 vs. NCBI nr
Match:
KAA0046254.1 (hypothetical protein E6C27_scaffold284G00570 [Cucumis melo var. makuwa])
HSP 1 Score: 248.1 bits (632), Expect = 7.2e-62
Identity = 135/171 (78.95%), Postives = 147/171 (85.96%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 350 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 409
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL DK RQL+EKT IKEALTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 410 DVQSSYSAQLLSMDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTVELSLERKELEKR 469
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLESTLLSPKKPLR 173
L+SIN +SEQLSILSCEK EAID++ELEVAKLQDE NTLE TLL +K R
Sbjct: 470 LRSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLERTLLLLRKRSR 520
BLAST of PI0004663 vs. NCBI nr
Match:
TYK03767.1 (hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa])
HSP 1 Score: 246.9 bits (629), Expect = 1.6e-61
Identity = 133/162 (82.10%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRT FEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 319 ALCMWEDIQDKIMRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 378
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL TDK RQL+EKT IKEALTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 379 DVQSSYSAQLLSTDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKR 438
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
LQSIN +SEQLSILSCEK EAID++ELEVAKLQDE NTLEST
Sbjct: 439 LQSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLEST 480
BLAST of PI0004663 vs. NCBI nr
Match:
KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 246.9 bits (629), Expect = 1.6e-61
Identity = 132/162 (81.48%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 728 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 787
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQLL TDK RQL+EKT IKE LTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 788 DVQSSYSAQLLSTDKARQLNEKTSAIKEVLTLVKQLRGDAKVIQERTAELSLERKELEKR 847
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
L+SIN +SEQLSILSCEK EAID++ELEVAKLQDE NTLEST
Sbjct: 848 LRSINAESEQLSILSCEKAEAIDQQELEVAKLQDEVNTLEST 889
BLAST of PI0004663 vs. NCBI nr
Match:
KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])
HSP 1 Score: 245.7 bits (626), Expect = 3.6e-61
Identity = 133/162 (82.10%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 2 ALCMWDDIQDKIMRTPFEYIPRLRPEIAMVLSEIAKIHADNLTPLEVYLNSYLKRVDSFN 61
ALCMW+DIQDKIMRTPFEYIPRLRPEIA VLS I KIHAD LT LE YLNSYLKRVD+FN
Sbjct: 636 ALCMWEDIQDKIMRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFN 695
Query: 62 DVQSSYSAQLLLTDKTRQLDEKTFVIKEALTLMDQLREDAKVIQERATQLSLDKKELESR 121
DVQSSYSAQL LTDK RQL+EKT IKEALTL+ QLR DAKVIQER +LSL++KELE R
Sbjct: 696 DVQSSYSAQLSLTDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTVELSLERKELEKR 755
Query: 122 LQSINTKSEQLSILSCEKYEAIDRKELEVAKLQDEANTLEST 164
LQSIN +SEQLSILS EK EAID++ELEVAKLQDE NTLEST
Sbjct: 756 LQSINAESEQLSILSYEKAEAIDQQELEVAKLQDEVNTLEST 797
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V3X5 | 1.2e-62 | 82.10 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5A7TT69 | 3.5e-62 | 78.95 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BW91 | 7.7e-62 | 82.10 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7VHW8 | 7.7e-62 | 81.48 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| A0A5A7U8X8 | 1.7e-61 | 82.10 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0060431.1 | 2.5e-62 | 82.10 | hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK1852... | [more] |
| KAA0046254.1 | 7.2e-62 | 78.95 | hypothetical protein E6C27_scaffold284G00570 [Cucumis melo var. makuwa] | [more] |
| TYK03767.1 | 1.6e-61 | 82.10 | hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa] | [more] |
| KAA0065375.1 | 1.6e-61 | 81.48 | hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa] | [more] |
| KAA0052363.1 | 3.6e-61 | 82.10 | hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
