PI0004555 (gene) Melon (PI 482460) v1

Overview
NamePI0004555
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr07: 15127482 .. 15128992 (+)
RNA-Seq ExpressionPI0004555
SyntenyPI0004555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTCCTGCTTGGCAGGCGGCAAAAGAGATAGAGATATCTCCTTCGCCAAACTTATCCTTAGCATATTACTCAGAAATGACGAAATATGTGGCGGAAGCACCGAGAGGCTGCTCGCCTTAATTAAGGGTGGTGAAACATAAGATAAAAACGCGATTAGTTAGAAATTATCCCTTAACTTTGAGTATTTGGGTCCCAAAAGGTGAACAAGTATGGTGGAGGCTCCGAGAGGTTGCTCACCTTAATCCGAAGTTAACGAATAATTTCCAACGCCTTTTGCACGATCATAATTATCTCATATAATACATAGTTCCTACTTTCATCATTGCCTAGAAATTGAGTTCGCATGTTCCATATCGATCCATTCGCCATGTCCATATTCGTTGACTCCTTCGCATAAGTAGTGTAAATAGTTAGATTAAACAATTTACTTGTAAATGATATTGTATACCGCTGGAAGATTAGAACGCCTAATGAACCAACAGTAACCAGAATCCTTGCGTTCGACCCTGGCTTATCCAGGAAACCTCTTGTTCGCTTACACTTGGGCGAATAAGAGAAAAACTTGTACTTAATGGATTATCATGAGTAGTTTGCAACGCATAGGTTTAGCTCCGCACCTTTTAATGCAGGATGCTTGCCTGATCGCCTAGAATCCCAGTCGCATACTTAGAACCAATAATTTCACATACACGAAAATGAATTCAATTAATGAAGAACCAAGTTTTTGGCGCCGTTGTCGGGGATTTTGTGTTTATCTCGTTGTGTTTAATTTATGCGCTAATCTTTTTGCAGAAACTCAGTTTCAGTTGAATCGCGCGTTCAAACCCGAAGAACGTGAGAACAAGTTTATGAGTGACAGTGAACAACCATTTGAACTTGACCCTGAAATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAGAGACAAGTTCGTAGGATGGAAAATAACAATAGAAATGCCCCTCCGCCGCAAACTGACCCAGAACCAAACGCCGCCTATATAGCACATGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTATAACTTCAACCCAGGAATCGCCTACCCTGTATTTGGCGAGAACGTCAGGTTTGAAATCAAACCTGTTATGCTTCAAATGATTCAGAACGCCGGACAATTCGGCGGACATCCTGGGAAAGATCCACACGAACATATAAGGAGTTTCTACTCCATTTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCGAATGCCCTAGAAGATGGCGAGGTGGGAACATGGGATCAATTAATAGAAAAATTTATGAAGAAATTTTTCCCACCTCACGAAAATGCTAGAAGGAGGAAGGAACTTATGAGCTTCCAGCAGAAGGATAGAGAAAACCTACATGACACGTGGAGTAGGTTCAAACGGATGGTCAAAGCATGCCCCCACAATGGCATTCCTAA

mRNA sequence

ATGCGGTCCTGCTTGGCAGGCGGCAAAAGAGATAGAGATATCTCCTTCGCCAAACTTATCCTTAGCATATTACTCAGAAATGACGAAATATGTGGCGGAAGCACCGAGAGGCTGCTCGCCTTAATTAAGGGTGAAACTCAGTTTCAGTTGAATCGCGCGTTCAAACCCGAAGAACGTGAGAACAAGTTTATGAGTGACAGTGAACAACCATTTGAACTTGACCCTGAAATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAGAGACAAGTTCGTAGGATGGAAAATAACAATAGAAATGCCCCTCCGCCGCAAACTGACCCAGAACCAAACGCCGCCTATATAGCACATGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTATAACTTCAACCCAGGAATCGCCTACCCTGTATTTGGCGAGAACGTCAGGTTTGAAATCAAACCTGTTATGCTTCAAATGATTCAGAACGCCGGACAATTCGGCGGACATCCTGGGAAAGATCCACACGAACATATAAGGAGTTTCTACTCCATTTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCGAATGCCCTAGAAGATGGCGAGGTTCAAACGGATGGTCAAAGCATGCCCCCACAATGGCATTCCTAA

Coding sequence (CDS)

ATGCGGTCCTGCTTGGCAGGCGGCAAAAGAGATAGAGATATCTCCTTCGCCAAACTTATCCTTAGCATATTACTCAGAAATGACGAAATATGTGGCGGAAGCACCGAGAGGCTGCTCGCCTTAATTAAGGGTGAAACTCAGTTTCAGTTGAATCGCGCGTTCAAACCCGAAGAACGTGAGAACAAGTTTATGAGTGACAGTGAACAACCATTTGAACTTGACCCTGAAATTGAGCGAACATTTCGGGGTAATCGGCGAAGAGCAAGGCAGAGACAAGTTCGTAGGATGGAAAATAACAATAGAAATGCCCCTCCGCCGCAAACTGACCCAGAACCAAACGCCGCCTATATAGCACATGACTTGGATAGGCCGATTAGATCTTATGCGGCACCCAACCTCTATAACTTCAACCCAGGAATCGCCTACCCTGTATTTGGCGAGAACGTCAGGTTTGAAATCAAACCTGTTATGCTTCAAATGATTCAGAACGCCGGACAATTCGGCGGACATCCTGGGAAAGATCCACACGAACATATAAGGAGTTTCTACTCCATTTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCGAATGCCCTAGAAGATGGCGAGGTTCAAACGGATGGTCAAAGCATGCCCCCACAATGGCATTCCTAA

Protein sequence

MRSCLAGGKRDRDISFAKLILSILLRNDEICGGSTERLLALIKGETQFQLNRAFKPEERENKFMSDSEQPFELDPEIERTFRGNRRRARQRQVRRMENNNRNAPPPQTDPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVQTDGQSMPPQWHS
Homology
BLAST of PI0004555 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 76/108 (70.37%), Postives = 84/108 (77.78%), Query Frame = 0

Query: 99  NNRNAPPPQTDPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 158
           NN+  P  Q     N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 159 QMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGISPEELRFALFPL 207
           Q+IQNAGQF  HP KDPH++IR+FYSICASFHMPGIS EELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0004555 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.7e-31
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 99  NNRNAPPPQTDPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 158
           NN+N P  Q   E N AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 159 QMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGIS 196
            M QNAGQFGGHP +DP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0004555 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.2e-27
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 96  MENNNRNAPP--PQTDPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEI 155
           M +N  N  P    T  + N   IAH+LD PIR+Y + NLY+FN GIAY VFGEN  FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 156 KPVMLQMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGIS 196
           KPVMLQMIQ AGQF G+ G+DPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

BLAST of PI0004555 vs. ExPASy TrEMBL
Match: A0A5A7TNS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00350 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-25
Identity = 65/146 (44.52%), Postives = 85/146 (58.22%), Query Frame = 0

Query: 96  MENNNRN-------APPPQTDPE--------------PNAAYIAHDLDRPIRSYAAPNLY 155
           MEN N N       AP  +TD +               N   IAH+L+ PI  YA+P+LY
Sbjct: 1   MENLNENLDGNVSVAPNERTDNQNLGDMNQRKANIASENPILIAHNLNNPINEYASPDLY 60

Query: 156 NFNPGIAYPVFGENVRFEIKPVMLQMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGI 215
            FN GI YP FG N RF++KP ML MIQ   QFGG+  +DP +HI+S Y +C+SFH+P +
Sbjct: 61  VFNLGITYPAFG-NARFKMKPTMLHMIQTTVQFGGYLDEDPQDHIKSIYVMCSSFHLPCL 120

Query: 216 SPEELRFALFPLTLRDEAKRWANALE 221
           S E+L    F  TL+D+ K+W   LE
Sbjct: 121 SQEDLHITYFTFTLKDDIKKWVGTLE 145

BLAST of PI0004555 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 56/114 (49.12%), Postives = 66/114 (57.89%), Query Frame = 0

Query: 111 EPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNAGQFGGH 170
           E N   +A D  R IR YAAP     N GI  P   +   FE+KPVM QM+Q  GQFGG 
Sbjct: 11  EANPIALADDRARAIREYAAPMFNELNSGIVRPEI-QAPHFELKPVMFQMLQTVGQFGGS 70

Query: 171 PGKDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV 225
           P +DPH HIRSF  +  SF + G+S E LR  LFP +LRD A+ W N L    V
Sbjct: 71  PTEDPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSV 123

BLAST of PI0004555 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 165.6 bits (418), Expect = 5.1e-37
Identity = 87/185 (47.03%), Postives = 117/185 (63.24%), Query Frame = 0

Query: 63  FMSDSEQP-FELDPEIERTFRGNRRRARQRQVRRMENNNRNA-----PPPQTDPEPNA-- 122
           +MS+ + P F++DPEIERTFR   R+ +QR+  +    N +A       PQ     NA  
Sbjct: 1   YMSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANA 60

Query: 123 ----------AYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNA 182
                       +AHD +RP+R YA+PNLYNF PGI  P F  N RFE+KPVMLQM+Q A
Sbjct: 61  QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAA 120

Query: 183 GQFGGHPGKDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV 230
           GQFGG  G+DPH H++SF  IC++F M G+  + +R  LFP +LRDEA++WA + E GE+
Sbjct: 121 GQFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFEPGEI 180

BLAST of PI0004555 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-35
Identity = 76/108 (70.37%), Postives = 84/108 (77.78%), Query Frame = 0

Query: 99  NNRNAPPPQTDPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 158
           NN+  P  Q     N  Y+A D DRPIRSYA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 159 QMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGISPEELRFALFPL 207
           Q+IQNAGQF  HP KDPH++IR+FYSICASFHMPGIS EELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0004555 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-33
Identity = 78/168 (46.43%), Postives = 112/168 (66.67%), Query Frame = 0

Query: 67  SEQPFELDPEIERTF--RGNRRRARQRQVRRMENNNRNAPPPQ---TDPEPNAAYIAHDL 126
           ++  FE +PEI+ TF  R ++ RA +R++   +NNN  AP        P  +  ++A D 
Sbjct: 5   TDPEFEANPEIDHTFRTRAHQNRAWRRRINMADNNNNEAPEGNQGVNRPVQDPVFLAADH 64

Query: 127 DRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNAGQFGGHPGKDPHEHIRS 186
           + PIR+YAAPNLY+F+PGI+ P+  EN RFEIKPVM+QMIQN  QF     ++PH H+  
Sbjct: 65  NIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPHAHLTI 124

Query: 187 FYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVQTDGQ 230
           F  +C++F +PGI+P  +R  LFP TLRD+AKRWA++LE  E+ +  Q
Sbjct: 125 FVEMCSTFSIPGITPVGIRLYLFPYTLRDKAKRWAHSLEANEITSSDQ 172

BLAST of PI0004555 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-30
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 99  NNRNAPPPQTDPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 158
           NN+N P  Q   E N AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 159 QMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGIS 196
            M QNAGQFGGHP +DP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0004555 vs. NCBI nr
Match: TYK02149.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-26
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 96  MENNNRNAPP--PQTDPEPNAAYIAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENVRFEI 155
           M +N  N  P    T  + N   IAH+LD PIR+Y + NLY+FN GIAY VFGEN  FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 156 KPVMLQMIQNAGQFGGHPGKDPHEHIRSFYSICASFHMPGIS 196
           KPVMLQMIQ AGQF G+ G+DPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U72.3e-3570.37Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN87.7e-3169.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVN15.2e-2762.75Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7TNS88.3e-2544.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
U5CUK72.5e-2149.12Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640... [more]
Match NameE-valueIdentityDescription
WP_217833177.15.1e-3747.03retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
KAA0062403.14.8e-3570.37putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
XP_038887458.14.5e-3346.43uncharacterized protein LOC120077591 [Benincasa hispida][more]
KAA0051815.11.6e-3069.07hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
TYK02149.11.1e-2662.75putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004555.1PI0004555.1mRNA