PI0004424 (gene) Melon (PI 482460) v1

Overview
NamePI0004424
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr02: 9501543 .. 9503764 (-)
RNA-Seq ExpressionPI0004424
SyntenyPI0004424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGAATTCTCTAAGTTTTGGGAATAGAGCATTGGAACTCTACAACTCTCTAACAAAAGAGGTAAGTGAATTGACAACTTTCTTACTTCTTTTGTGCAAGGTGGTTGTAACGACCACAAGTTCGACTAAGCATCAAGGTAATTCTTCTCATCTAGTTGGTTAATTAAAGGAAAAAGAATTGAGTTTAATAAGGATGTGCTCAATTTTGGAGGAAATTTGATTAAGATTATGTTAAAATCAATTTATTGGGTTTAGTAAGGTTAATTTTGGTAATTTGGCCTTAAACCCATTTTTCTGCCGTGTTTTGCTTTCTCCAGCACTCATTCCTTTCCTCTTTGCGTGTGGTTTCCCCGAGCAGCCCACTCCCTCTCGAAAAATCCCTAGCGTTGCGCGTTGTCTCGCCGCCCGGAGCTCCCTCTCTGCCTGCCCGTACCGCCGGAAACCCTTGCCGCTTGTTTGTGTGGCCTGGGTTGGTTCGTTTAGCAAGGTTGTGCGGTGTGAGGTCCTCTTTTCACTAAGTTGGTACTCGTGGAGCCTTCTTCCCTGGTGAGTGTTTCGAAATCCTTCTTCTCCATCTCGCCTAGTTCCTCTTCTCCGCGTTTTGTTTCTTTGTTGCTCCGCGAAGTAATCCCACTCAATTTCCAGCTTCCTCTGTTCGCGGGCTACTGTTGAGTTTCGCAAAGCTTCCTTATTCGCGAGCTCCCCGTGTCACCAGCCTCTGTCCGTGAGGAGCCTGGCGTTTAGCTAAGCCCCCTTGCTCGCGAGTTGAGGAGCCTTGCCGCATTCTAAAGCCCTCTGCCCGCCTCTCCTTGCTTAGTCCTTGCCGCGAGCTCCTTTGGTCGTTTGAGGTAAGTCTTCATCCGTTGCGGTTTGGTTTTGATTCTTCTCCGAATCTTGGGTCTTAGTCTTTTCGCTTTGTATTTGGTCTTGCCGCGTAGATTTGTGGTCTCACCGAGGAGAGCATTTGGAGCTCACTCGTCCTCGCGATTCAGATCCCTTCTTGCCGCGTGTGCTTCTTGGAATAGCACATTTGAGGTAAGGGGTTCCTCTACCGTTTTAGCAAATGAAAAACGCTTTGAACACGAATTCTTTACATGAGACCGTGGTTAGAATTGGAGATTCTGTTATGGTTGGTTGATTGTTATGTGTGAAGTATTCCTATGAAATCATGTTATGTGCTTATCTTTGATTATGGACTTAGTATTATCAAAGCATGACTGATTGAGACTCTGCCTTTTGTTGAGTATTCTGGATAGTATGAATGACATGTATTATGTGGACTGTGGGTGAACGGTTATCTTTAGCGATGATAGTGTACCTGCATGCATTTTAGGTGTTTCCTTCGGGATCACCAGACTGATTAGGTGTTCCTTCGGGATCACCAGACTGATTAGGTGCGACCTTTGGGCCACTGGACTGATGGGTGCATCCTTCGGGATCACCGGACTGATTAGGTGAGCCTTCGGGCCGCCAGACTGTATTGTGGAACTCCTTCGAAATTCCTTGACTGATATTGCTGCAGGATACCCATAGGAAGATAACTGTTCAACCCTAGCTTGATTGTAGCGCTTCCCCCTTACTGAGTATATTGTATACTCACCCTTTTCATGTTTAACTTCTACAGGCAAAGGTAATACGAGCGGCAGACCGGCGAGGGGTAGGAAGGACACGTGATGGTCATAGGCGTTGTCGTTGCTTCCGCTATTAGTCATGTCTGTTCTTTTTGTGATGTATTTACTTGACATTTCAAAACTTCTTAACTATGTTACTTAAACGATGTTTGTTACACTTGATGTTTTGTATTTGAAACTCGGGCCCATACTTTCGTTTTCCCTACGTTATGAGTTATTTGAATGGAAATTTTGGGAAAATCTTGATTTGAACTAAATTCTTGTTTTCACTGGAGTCGTGGTATCGGTCTTGTACTTTAGAGAGTCGGATCGTTACAGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGTTTGGTTGGACATCCAAATGACAAATGTCTCAAGTTAACCAAGGATGTGGATGTTATTAGGATGTATGATTCCCACGGTAATATATACAATTCAGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGTCCACTCAAGCAACATCCTCATTTTCAAACCAAGGTATAAATCTTGAAGACATAGTCAAGGCTTTAGCTACTAATACTCTTTCTTTTTAA

mRNA sequence

ATGGTGGAGAATTCTCTAAGTTTTGGGAATAGAGCATTGGAACTCTACAACTCTCTAACAAAAGAGCACTCATTCCTTTCCTCTTTGCGTGTGGTTTCCCCGAGCAGCCCACTCCCTCTCGAAAAATCCCTAGCGTTGCGCGTTGTCTCGCCGCCCGGAGCTCCCTCTCTGCCTGCCCGTACCGCCGGAAACCCTTGCCGCTTGTTTGTGTGGCCTGGGTTGGTTCGTTTAGCAAGGTTGTGCGATTTGTGGTCTCACCGAGGAGAGCATTTGGAGCTCACTCGTCCTCGCGATTCAGATCCCTTCTTGCCGCGTGTGCTTCTTGGAATAGCACATTTGAGAGAGTCGGATCGTTACAGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGTTTGGTTGGACATCCAAATGACAAATGTCTCAAGTTAACCAAGGATGTGGATGTTATTAGGATGTATGATTCCCACGGTAATATATACAATTCAGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGTCCACTCAAGCAACATCCTCATTTTCAAACCAAGGTATAAATCTTGAAGACATAGTCAAGGCTTTAGCTACTAATACTCTTTCTTTTTAA

Coding sequence (CDS)

ATGGTGGAGAATTCTCTAAGTTTTGGGAATAGAGCATTGGAACTCTACAACTCTCTAACAAAAGAGCACTCATTCCTTTCCTCTTTGCGTGTGGTTTCCCCGAGCAGCCCACTCCCTCTCGAAAAATCCCTAGCGTTGCGCGTTGTCTCGCCGCCCGGAGCTCCCTCTCTGCCTGCCCGTACCGCCGGAAACCCTTGCCGCTTGTTTGTGTGGCCTGGGTTGGTTCGTTTAGCAAGGTTGTGCGATTTGTGGTCTCACCGAGGAGAGCATTTGGAGCTCACTCGTCCTCGCGATTCAGATCCCTTCTTGCCGCGTGTGCTTCTTGGAATAGCACATTTGAGAGAGTCGGATCGTTACAGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGTTTGGTTGGACATCCAAATGACAAATGTCTCAAGTTAACCAAGGATGTGGATGTTATTAGGATGTATGATTCCCACGGTAATATATACAATTCAGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGTCCACTCAAGCAACATCCTCATTTTCAAACCAAGGTATAAATCTTGAAGACATAGTCAAGGCTTTAGCTACTAATACTCTTTCTTTTTAA

Protein sequence

MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPARTAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTLSF
Homology
[Close]
BLAST of PI0004424 vs. ExPASy TrEMBL
Match: A0A5A7V9S2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00300 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.7e-37
Identity = 79/133 (59.40%), Postives = 97/133 (72.93%), Query Frame = 0 

Query: 76  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVG 135
           R+A+    + +RG  L+ +  ++    L   +L +  L  S     PL VTKCGVCGLVG
Sbjct: 136 RMAKNSQSFGNRGSELDNSLTKEVSE-LRSQMLNMTTLLTSFVQGTPLNVTKCGVCGLVG 195

Query: 136 HPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLE 195
           HPNDKCL++ +DV+++R YD HGN YNSGWRDNPNLRWGNDNQK TQA  +FSNQG NLE
Sbjct: 196 HPNDKCLEVIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQKHTQAPPTFSNQGTNLE 255

Query: 196 DIVKALATNTLSF 209
           DI+KALATNTLSF
Sbjct: 256 DIIKALATNTLSF 267

[Close]
BLAST of PI0004424 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 107 LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWR 166
           +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD HGN YNSGWR
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198

Query: 167 DNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTLSF 209
           DNPNLRWGNDNQK TQA S+ SNQG NLEDI+KALATNTLSF
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSF 240

[Close]
BLAST of PI0004424 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 94/208 (45.19%), Postives = 103/208 (49.52%), Query Frame = 0 

Query: 1   MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPAR 60
           MVENS SFGNRA EL NSLTKE S L S                                
Sbjct: 137 MVENSQSFGNRASELDNSLTKEVSELKS-------------------------------- 196

Query: 61  TAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYS 120
                                                         +L +  L  S    
Sbjct: 197 ---------------------------------------------QMLNMTTLLTSFVQG 256

Query: 121 GPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKS 180
            P KVTKCGVCGLVGHPNDKCLK+ +DV+++R YD H N YNSGWRDNPNLRWGNDNQK 
Sbjct: 257 TPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKH 267

Query: 181 TQATSSFSNQGINLEDIVKALATNTLSF 209
           TQA S+ SNQG NLEDI+KAL TNTLSF
Sbjct: 317 TQAPSTSSNQGTNLEDIIKALGTNTLSF 267

[Close]
BLAST of PI0004424 vs. ExPASy TrEMBL
Match: A0A5A7UID2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001450 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.6e-34
Identity = 71/102 (69.61%), Postives = 82/102 (80.39%), Query Frame = 0 

Query: 107 LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWR 166
           +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD +GN YNSGWR
Sbjct: 56  MLNMTTLLTSFVQDTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWR 115

Query: 167 DNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTLSF 209
           DNPNLRWGNDNQK TQA  + SNQG NLEDI+KALATNTLSF
Sbjct: 116 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSF 157

[Close]
BLAST of PI0004424 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 76/133 (57.14%), Postives = 93/133 (69.92%), Query Frame = 0 

Query: 76  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVG 135
           R+A   + + +R   L+ +  ++    L   +L +  L  S     P KVTKCGVCGLVG
Sbjct: 73  RMAENSESFGNRASELDNSLTKEVSE-LKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVG 132

Query: 136 HPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLE 195
           HPNDKC K+ +DV+++R YD H N YNSGWRDN NLRWGNDNQK TQA S+ SNQG NLE
Sbjct: 133 HPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLE 192

Query: 196 DIVKALATNTLSF 209
           DI+KALATNTLSF
Sbjct: 193 DIIKALATNTLSF 204

[Close]
BLAST of PI0004424 vs. NCBI nr
Match: KAA0063974.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK05167.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 7.7e-37
Identity = 79/133 (59.40%), Postives = 97/133 (72.93%), Query Frame = 0 

Query: 76  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVG 135
           R+A+    + +RG  L+ +  ++    L   +L +  L  S     PL VTKCGVCGLVG
Sbjct: 136 RMAKNSQSFGNRGSELDNSLTKEVSE-LRSQMLNMTTLLTSFVQGTPLNVTKCGVCGLVG 195

Query: 136 HPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLE 195
           HPNDKCL++ +DV+++R YD HGN YNSGWRDNPNLRWGNDNQK TQA  +FSNQG NLE
Sbjct: 196 HPNDKCLEVIEDVNIVRRYDPHGNTYNSGWRDNPNLRWGNDNQKHTQAPPTFSNQGTNLE 255

Query: 196 DIVKALATNTLSF 209
           DI+KALATNTLSF
Sbjct: 256 DIIKALATNTLSF 267

[Close]
BLAST of PI0004424 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-35
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 107 LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWR 166
           +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD HGN YNSGWR
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198

Query: 167 DNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTLSF 209
           DNPNLRWGNDNQK TQA S+ SNQG NLEDI+KALATNTLSF
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSF 240

[Close]
BLAST of PI0004424 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 4.7e-34
Identity = 94/208 (45.19%), Postives = 103/208 (49.52%), Query Frame = 0 

Query: 1   MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPAR 60
           MVENS SFGNRA EL NSLTKE S L S                                
Sbjct: 137 MVENSQSFGNRASELDNSLTKEVSELKS-------------------------------- 196

Query: 61  TAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYS 120
                                                         +L +  L  S    
Sbjct: 197 ---------------------------------------------QMLNMTTLLTSFVQG 256

Query: 121 GPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKS 180
            P KVTKCGVCGLVGHPNDKCLK+ +DV+++R YD H N YNSGWRDNPNLRWGNDNQK 
Sbjct: 257 TPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKH 267

Query: 181 TQATSSFSNQGINLEDIVKALATNTLSF 209
           TQA S+ SNQG NLEDI+KAL TNTLSF
Sbjct: 317 TQAPSTSSNQGTNLEDIIKALGTNTLSF 267

[Close]
BLAST of PI0004424 vs. NCBI nr
Match: KAA0053321.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-33
Identity = 71/102 (69.61%), Postives = 82/102 (80.39%), Query Frame = 0 

Query: 107 LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWR 166
           +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD +GN YNSGWR
Sbjct: 56  MLNMTTLLTSFVQDTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWR 115

Query: 167 DNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTLSF 209
           DNPNLRWGNDNQK TQA  + SNQG NLEDI+KALATNTLSF
Sbjct: 116 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSF 157

[Close]
BLAST of PI0004424 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-33
Identity = 76/133 (57.14%), Postives = 93/133 (69.92%), Query Frame = 0 

Query: 76  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVG 135
           R+A   + + +R   L+ +  ++    L   +L +  L  S     P KVTKCGVCGLVG
Sbjct: 73  RMAENSESFGNRASELDNSLTKEVSE-LKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVG 132

Query: 136 HPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLE 195
           HPNDKC K+ +DV+++R YD H N YNSGWRDN NLRWGNDNQK TQA S+ SNQG NLE
Sbjct: 133 HPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLE 192

Query: 196 DIVKALATNTLSF 209
           DI+KALATNTLSF
Sbjct: 193 DIIKALATNTLSF 204

The following BLAST results are available for this feature:
BLAST of PI0004424 vs.
Match NameE-valueIdentityDescription
BLAST of PI0004424 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9S23.7e-3759.40Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3CRR83.5e-3571.57Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V0Q72.3e-3445.19Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7UID26.6e-3469.61Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3CB461.1e-3357.14Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of PI0004424 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0063974.17.7e-3759.40retrotransposon gag protein [Cucumis melo var. makuwa] >TYK05167.1 retrotranspos... [more]
KAA0047407.17.2e-3571.57retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
KAA0061138.14.7e-3445.19retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0053321.11.4e-3369.61retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK07549.12.3e-3357.14retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of PI0004424 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0004424.1PI0004424.1mRNA