PI0004378 (gene) Melon (PI 482460) v1

Overview


Name	PI0004378
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	BHLH domain-containing protein
Location	chr05: 252298 .. 253188 (-)
RNA-Seq Expression	PI0004378
Synteny	PI0004378

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTGTATTTTCCCTCAATCAGGATGCTCGAGCTTCCTTCTTGCATTCCATTATGCAATCTTTTCATTCCACTTACATTTGCCTTTGGTCTTATTTACCCCATCCTTCCAAGTATTACTGTTTTCATTTTCCTTTTTCTTTTCCTAATTATTTATTGGAATAATATTAATTTTATATTTTATGTTTTTAGTTGTTTAATGAATCTTGATGGGTTGTATCGGGAGGATGAAGATGATGATCAGAAGAAACAACCCAGCAGTTCTTTAGGAAGTTATCAACGAAGGCTGTTCAATGACTATACACAAATCATATTTAATCTTGAAAATAAGTAAGTTTTTTCTTTCTGTTATTAGAAAAGAAAATTATTATAACTTTTTGATTAATTAAAAAATTTTAAATTATGAACACACTTACAGTCTTGTCCCTGGTCATGCTTTCAAGAACAAAATTTCATTTTTAGAGGTTCAGGAATCTGTGCTTCTAAACCACTCTTCCTCTCAAATCCAAACCCAATTTTATGCTGTAAGTGTGTAACTTTATTTTATGCTAATATACATCATTTTTTTTTTTTAATTTTTTTAATTTTTTTTTCTTGCAGGCAGCTGGGATTAAGGTAAGTTGTTGTTGTTAACTAATTTCGGATATATATGAATTATTTTATCCCAAAATATGAACTTCTCATTAGATCAAGATCATAAGCTCATTGATTAAATTAAGACTCTCCCAGCTAGTATTTTGTATGATTCATTCCCTCTTAAACTGTCTAAAGTTAGTTTAAAAATCAAAAAATGAAATAACATCTAAATTTTATTGTGATTTATTAGTAATTAGCTTAATATTGTAGAGAAATGTGGCCTACAACTCTCTGATCTTTTTGGTTGATTAA

mRNA sequence

ATGGAAATTGTATTTTCCCTCAATCAGGATGCTCGAGCTTCCTTCTTGCATTCCATTATGCAATCTTTTCATTCCACTTACATTTGCCTTTGGTCTTATTTACCCCATCCTTCCAATTGTTTAATGAATCTTGATGGGTTGTATCGGGAGGATGAAGATGATGATCAGAAGAAACAACCCAGCAGTTCTTTAGGAAGTTATCAACGAAGGCTGTTCAATGACTATACACAAATCATATTTAATCTTGAAAATAATCTTGTCCCTGGTCATGCTTTCAAGAACAAAATTTCATTTTTAGAGGTTCAGGAATCTGTGCTTCTAAACCACTCTTCCTCTCAAATCCAAACCCAATTTTATGCTGCAGCTGGGATTAAGAGAAATGTGGCCTACAACTCTCTGATCTTTTTGGTTGATTAA

Coding sequence (CDS)

ATGGAAATTGTATTTTCCCTCAATCAGGATGCTCGAGCTTCCTTCTTGCATTCCATTATGCAATCTTTTCATTCCACTTACATTTGCCTTTGGTCTTATTTACCCCATCCTTCCAATTGTTTAATGAATCTTGATGGGTTGTATCGGGAGGATGAAGATGATGATCAGAAGAAACAACCCAGCAGTTCTTTAGGAAGTTATCAACGAAGGCTGTTCAATGACTATACACAAATCATATTTAATCTTGAAAATAATCTTGTCCCTGGTCATGCTTTCAAGAACAAAATTTCATTTTTAGAGGTTCAGGAATCTGTGCTTCTAAACCACTCTTCCTCTCAAATCCAAACCCAATTTTATGCTGCAGCTGGGATTAAGAGAAATGTGGCCTACAACTCTCTGATCTTTTTGGTTGATTAA

Protein sequence

MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQPSSSLGSYQRRLFNDYTQIIFNLENNLVPGHAFKNKISFLEVQESVLLNHSSSQIQTQFYAAAGIKRNVAYNSLIFLVD

Homology

[Close]

BLAST of PI0004378 vs. ExPASy Swiss-Prot
Match: Q9LTS4 (Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 41  LMNLDGLYREDEDDDQKKQPSSSLGSYQRRLFNDYTQIIFNLENNLVPGHAFKNKISFLE 100
           L+++DG Y E  ++      SSS GS  R LF++Y Q +  L+N  VP  AF N + ++E
Sbjct: 11  LISMDGYYNEASEEPSS---SSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNLPYVE 70

Query: 101 V--QESVLLNHSSSQ 114
           +  QES  L  + +Q
Sbjct: 71  IRPQESQRLAFNDTQ 82

[Close]

BLAST of PI0004378 vs. ExPASy TrEMBL
Match: A0A1S3CAK0 (putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.9e-54
Identity = 115/134 (85.82%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           MEIVFS NQDARAS LHSIMQS  S+Y+CLWSYLPHPSNCLMNL GL+REDEDDDQKKQP
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENN--LVPGHAFKNKISFLEVQESVLLNHSSSQIQTQF 120
           SSSLGS QRRLFNDYTQ+IFNLENN  LVPGHAFKN ISFLEVQESVLL HSSSQIQTQF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

Query: 121 YAAAGIKRNVAYNS 133
           YAAAGIK  V   S
Sbjct: 121 YAAAGIKSVVFMGS 133

[Close]

BLAST of PI0004378 vs. ExPASy TrEMBL
Match: A0A1S3C9K1 (putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           MEIVFS NQDARAS LHSIMQS  S+Y+CLWSYLPHPSNCLMNL GL+REDEDDDQKKQP
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENN--LVPGHAFKNKISFLEVQESVLLNHSSSQIQTQF 120
           SSSLGS QRRLFNDYTQ+IFNLENN  LVPGHAFKN ISFLEVQESVLL HSSSQIQTQF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

Query: 121 YAA 122
           YA+
Sbjct: 121 YAS 122

[Close]

BLAST of PI0004378 vs. ExPASy TrEMBL
Match: A0A6J1DKX4 (putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC111021867 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.7e-42
Identity = 86/132 (65.15%), Postives = 109/132 (82.58%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           +++VFSL++ +RA+FL  +M SFH  YIC+WS+ P  SNCL+NLD LYRED+DDD K+Q 
Sbjct: 3   LDVVFSLDEGSRATFLRRLMHSFHCIYICVWSHFP-LSNCLLNLDRLYREDDDDDDKQQA 62

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENNLVPGHAFKNKISFLEVQESVLLNHSSSQIQTQFYA 120
           SSSLGS+ RRLFNDYTQ++FN++NNLVPGHAF N ISFLE++ES+L  H+S QIQ QFYA
Sbjct: 63  SSSLGSFDRRLFNDYTQLVFNVQNNLVPGHAFNNNISFLELRESLLQTHASYQIQRQFYA 122

Query: 121 AAGIKRNVAYNS 133
           AAGIK +V   S
Sbjct: 123 AAGIKSSVFMGS 133

[Close]

BLAST of PI0004378 vs. ExPASy TrEMBL
Match: A0A6J1FCH4 (uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC111444143 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 84/127 (66.14%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           M+ VFSL++  RA+FL +IMQSFH TYICLWSYLPHPS+CL+NLD L+RED+      QP
Sbjct: 1   MDTVFSLDEAPRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREDD----ANQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENN--LVPGHAFKNKISFLEVQESVLLNHSSSQIQTQF 120
           SSSLGS++RRLF++Y Q++FN+ENN  LVPGHAF N I FLE+ +S+L  HSSSQIQ+ F
Sbjct: 61  SSSLGSFERRLFDEYKQLVFNVENNISLVPGHAFNNNILFLELHQSLLHTHSSSQIQSHF 120

Query: 121 YAAAGIK 126
           YAAAGI+
Sbjct: 121 YAAAGIQ 123

[Close]

BLAST of PI0004378 vs. ExPASy TrEMBL
Match: A0A6J1HKA4 (uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.0e-38
Identity = 84/131 (64.12%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           M+ VFSL++  RA+FL +IMQSFH TYICLWSYLPHPS+CL+NLD L+RED+      QP
Sbjct: 1   MDTVFSLDEAPRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREDD----ANQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENN------LVPGHAFKNKISFLEVQESVLLNHSSSQI 120
           SSSLGS++RRLF++Y  +IF +ENN      LVPGHAF N I FLE+ +S+L  HSSSQI
Sbjct: 61  SSSLGSFERRLFDEYKPLIFKVENNVIIMNSLVPGHAFNNNIFFLELHQSLLHAHSSSQI 120

Query: 121 QTQFYAAAGIK 126
           Q+ FYAAAGIK
Sbjct: 121 QSHFYAAAGIK 127

[Close]

BLAST of PI0004378 vs. NCBI nr
Match: XP_008459381.1 (PREDICTED: putative transcription factor bHLH041 isoform X1 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 6.0e-54
Identity = 115/134 (85.82%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           MEIVFS NQDARAS LHSIMQS  S+Y+CLWSYLPHPSNCLMNL GL+REDEDDDQKKQP
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENN--LVPGHAFKNKISFLEVQESVLLNHSSSQIQTQF 120
           SSSLGS QRRLFNDYTQ+IFNLENN  LVPGHAFKN ISFLEVQESVLL HSSSQIQTQF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

Query: 121 YAAAGIKRNVAYNS 133
           YAAAGIK  V   S
Sbjct: 121 YAAAGIKSVVFMGS 133

[Close]

BLAST of PI0004378 vs. NCBI nr
Match: XP_008459388.1 (PREDICTED: putative transcription factor bHLH041 isoform X2 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-51
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           MEIVFS NQDARAS LHSIMQS  S+Y+CLWSYLPHPSNCLMNL GL+REDEDDDQKKQP
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENN--LVPGHAFKNKISFLEVQESVLLNHSSSQIQTQF 120
           SSSLGS QRRLFNDYTQ+IFNLENN  LVPGHAFKN ISFLEVQESVLL HSSSQIQTQF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

Query: 121 YAA 122
           YA+
Sbjct: 121 YAS 122

[Close]

BLAST of PI0004378 vs. NCBI nr
Match: XP_038890720.1 (putative transcription factor bHLH041 isoform X3 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 106/132 (80.30%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           MEIVFSL Q ARA+FL SIMQSFHSTYI LWSYLPHPSNCL+NLDG Y   EDDD+KKQP
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFY--GEDDDRKKQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENNLVPGHAFKNKISFLEVQESVLLNHSSSQIQTQFYA 120
           SSSLGS++RRLFN+YTQ+IFNLEN+LVPG+AFKN ISFLEVQESVL  HSSSQIQ QFYA
Sbjct: 61  SSSLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFYA 120

Query: 121 AAGIKRNVAYNS 133
           AAGIK  V   S
Sbjct: 121 AAGIKSVVFMGS 130

[Close]

BLAST of PI0004378 vs. NCBI nr
Match: XP_038890721.1 (putative transcription factor bHLH041 isoform X4 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 106/132 (80.30%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           MEIVFSL Q ARA+FL SIMQSFHSTYI LWSYLPHPSNCL+NLDG Y   EDDD+KKQP
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFY--GEDDDRKKQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENNLVPGHAFKNKISFLEVQESVLLNHSSSQIQTQFYA 120
           SSSLGS++RRLFN+YTQ+IFNLEN+LVPG+AFKN ISFLEVQESVL  HSSSQIQ QFYA
Sbjct: 61  SSSLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFYA 120

Query: 121 AAGIKRNVAYNS 133
           AAGIK  V   S
Sbjct: 121 AAGIKSVVFMGS 130

[Close]

BLAST of PI0004378 vs. NCBI nr
Match: XP_038890718.1 (putative transcription factor bHLH041 isoform X1 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 106/132 (80.30%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MEIVFSLNQDARASFLHSIMQSFHSTYICLWSYLPHPSNCLMNLDGLYREDEDDDQKKQP 60
           MEIVFSL Q ARA+FL SIMQSFHSTYI LWSYLPHPSNCL+NLDG Y   EDDD+KKQP
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFY--GEDDDRKKQP 60

Query: 61  SSSLGSYQRRLFNDYTQIIFNLENNLVPGHAFKNKISFLEVQESVLLNHSSSQIQTQFYA 120
           SSSLGS++RRLFN+YTQ+IFNLEN+LVPG+AFKN ISFLEVQESVL  HSSSQIQ QFYA
Sbjct: 61  SSSLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFYA 120

Query: 121 AAGIKRNVAYNS 133
           AAGIK  V   S
Sbjct: 121 AAGIKSVVFMGS 130

[Close]

BLAST of PI0004378 vs. TAIR 10
Match: AT5G56960.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 41  LMNLDGLYREDEDDDQKKQPSSSLGSYQRRLFNDYTQIIFNLENNLVPGHAFKNKISFLE 100
           L+++DG Y E  ++      SSS GS  R LF++Y Q +  L+N  VP  AF N + ++E
Sbjct: 11  LISMDGYYNEASEEPSS---SSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNLPYVE 70

Query: 101 V--QESVLLNHSSSQ 114
           +  QES  L  + +Q
Sbjct: 71  IRPQESQRLAFNDTQ 82

The following BLAST results are available for this feature:

BLAST of PI0004378 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS4	2.0e-04	37.33	Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 ...	[more]

BLAST of PI0004378 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAK0	2.9e-54	85.82	putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3C9K1	1.8e-51	87.80	putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1DKX4	5.7e-42	65.15	putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1FCH4	1.5e-39	66.14	uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC1114441...	[more]
A0A6J1HKA4	5.0e-38	64.12	uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335...	[more]

BLAST of PI0004378 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459381.1	6.0e-54	85.82	PREDICTED: putative transcription factor bHLH041 isoform X1 [Cucumis melo]	[more]
XP_008459388.1	3.6e-51	87.80	PREDICTED: putative transcription factor bHLH041 isoform X2 [Cucumis melo]	[more]
XP_038890720.1	1.5e-49	80.30	putative transcription factor bHLH041 isoform X3 [Benincasa hispida]	[more]
XP_038890721.1	1.5e-49	80.30	putative transcription factor bHLH041 isoform X4 [Benincasa hispida]	[more]
XP_038890718.1	1.5e-49	80.30	putative transcription factor bHLH041 isoform X1 [Benincasa hispida]	[more]

BLAST of PI0004378 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56960.1	1.4e-05	37.33	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46665:SF1	TRANSCRIPTION FACTOR BHLH041-RELATED	coord: 1..120
IPR044658	Transcription factor bHLH92/bHLH041-like	PANTHER	PTHR46665	TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004378.1	PI0004378.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity