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PI0004349 (gene) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAACGAAATGATATCATGACATTTTCTTTAGTATTAATGTGTATGAAGGTAAGAAATTCATACCTCTAATTTTACAGTTTAAAACATCTCAATACTCATCGTAAGATACATACACATATTAAAATAAAGAAAAACAAACTGAAAATCTCCATATCTTTCTCGACCTTCAATCCCATGTAGTGAGGGGGAAACATTGTTCCTTTCAGAAATGAAATAAACAAGAAAGAATTGTTATGAAGTAAGTCCCAGAAAAAGGAGAGAGACCTGTATACATGCAAAATTATGAGAGTTGTAGCACAAAAGGGGTAAAAAGGAAAGTAGCTAACTTAGATCAAAATAAAGATATATTTCCGAAGAGAAATTGGGGCCTCACATTTTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCGTCTCTCACAAAGAGTGAAGAGACAAAGAAATGGCAGAAGCTGGGCACCTTGTAACAACAGCAAGAAATATCAACTCCATTTCAAGTTCATTCAACAAAGCTGCACCTAAATCTTCAATTCAAACATTCAAAATCAAAGCTTCCTCAAAGAGAAATGACATCTCCTTGGTAAAACACAATCTCCTTATCATCTTTCAGATTTCTGCAGGCATTCCCTCTTCTATTCATACAATTCTCTTCCATCTCAATATTTTTTTTTTCTTTTGTTTTAATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACATAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGGTAATTTCAATACTTTTCTCTCCAAAATTCTATTTTATGTATAACATTAATGAACACAACTTGAATCCAACTCCAACAACATCTAACGATGGATCCGATCCATCTCCAATAGAATCTCAGAGTGGACTATTGTTGGAGAGACAGGGGTAAAGAGAAATTTTTCAAGAGAATGAGACTTGTTTCTTTTTCTTTTTCATTTTTTGTGAAGGAGCCTGCTGAAGAATCCATTTCTCAGCTCAAAGAGAGGAGACTTTGAACAATAAATTTTTAAACAATTTAAAGAATTCAAACAGCACAAAATGAGAGCCATTCTACACAAAATGCTCTACCCGATAACCATACCACTAACACTTTCCCTTCGTTTTTACCAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTCACCATATTGCAGAGAGGTAGCACTGTTTAAATAATCAAATAAAATCAGATAGCTATTTCCTACTCATCTGTATCTCATCTATCCATGAAGTTTCAATTCATAACATTACAACCAAAGTTCTAACACATACAATTATCTTAATCAAACAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAAGTTTTTGCATTCTTCACTTCAACCACTTAGAAGTATCACAACCATCTTAAACTTAACAGGTAATCTACGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTGAATGCAAATAGAATTAGCCTACTTATCAATAACCATTAATCTAAATACTACCAAGATTCAATTGGAAGAAGTTAACAAAACATCCTACCTCTTCCAGGACACTTGCTCAGAGTTGTGCGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTTAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGGGAAATGTTCATTGCAGATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAAGGCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATCTAGGCTTTCAAAAACATGACTGCCCATTGGTAAAATTAAATTGTTTATTAGTTTCTAAGTCAATATCATAATGGAAAAGTGGTTGACATCTGCAACTAAAACTGGTTTTGCCTTATCACTTCTATTTCTCCTTCAAGTAGTAGAAGACTAATACGCAATTGTCCATTTGACCAAACCATTCATCAGAAGTTCAAAATATATCCCGTAGTAAATCAATCCCCCCCCCCCCC TAACGAAATGATATCATGACATTTTCTTTAGTATTAATGTGTATGAAGGTAAGAAATTCATACCTCTAATTTTACAGTTTAAAACATCTCAATACTCATCGTAAGATACATACACATATTAAAATAAAGAAAAACAAACTGAAAATCTCCATATCTTTCTCGACCTTCAATCCCATGTAGTGAGGGGGAAACATTGTTCCTTTCAGAAATGAAATAAACAAGAAAGAATTGTTATGAAGTAAGTCCCAGAAAAAGGAGAGAGACCTGTATACATGCAAAATTATGAGAGTTGTAGCACAAAAGGGGTAAAAAGGAAAGTAGCTAACTTAGATCAAAATAAAGATATATTTCCGAAGAGAAATTGGGGCCTCACATTTTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCGTCTCTCACAAAGAGTGAAGAGACAAAGAAATGGCAGAAGCTGGGCACCTTGTAACAACAGCAAGAAATATCAACTCCATTTCAAGTTCATTCAACAAAGCTGCACCTAAATCTTCAATTCAAACATTCAAAATCAAAGCTTCCTCAAAGAGAAATGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACATAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTCACCATATTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAATCTACGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGTTGTGCGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTTAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGGGAAATGTTCATTGCAGATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAAGGCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATCTAGGCTTTCAAAAACATGACTGCCCATTGGTAAAATTAAATTGTTTATTAGTTTCTAAGTCAATATCATAATGGAAAAGTGGTTGACATCTGCAACTAAAACTGGTTTTGCCTTATCACTTCTATTTCTCCTTCAAGTAGTAGAAGACTAATACGCAATTGTCCATTTGACCAAACCATTCATCAGAAGTTCAAAATATATCCCGTAGTAAATCAATCCCCCCCCCCCCC ATGGCAGAAGCTGGGCACCTTGTAACAACAGCAAGAAATATCAACTCCATTTCAAGTTCATTCAACAAAGCTGCACCTAAATCTTCAATTCAAACATTCAAAATCAAAGCTTCCTCAAAGAGAAATGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACATAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTCACCATATTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAATCTACGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGTTGTGCGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTTAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGGGAAATGTTCATTGCAGATATTGGGGCACAGAACGCTGCATCTATAG MAEAGHLVTTARNINSISSSFNKAAPKSSIQTFKIKASSKRNDISLRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPTVQCKWSSVTDLSFHLQLTLGLIGKCSLQILGHRTLHL Homology
BLAST of PI0004349 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 2.6e-47 Identity = 93/157 (59.24%), Postives = 117/157 (74.52%), Query Frame = 0
BLAST of PI0004349 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 7.4e-106 Identity = 198/206 (96.12%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of PI0004349 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 7.4e-106 Identity = 198/206 (96.12%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of PI0004349 vs. ExPASy TrEMBL
Match: A0A6J1J6V3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 1.1e-101 Identity = 195/225 (86.67%), Postives = 205/225 (91.11%), Query Frame = 0
BLAST of PI0004349 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 6.1e-100 Identity = 196/244 (80.33%), Postives = 200/244 (81.97%), Query Frame = 0
BLAST of PI0004349 vs. ExPASy TrEMBL
Match: A0A6J1F2W8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 1.8e-99 Identity = 191/221 (86.43%), Postives = 200/221 (90.50%), Query Frame = 0
BLAST of PI0004349 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus]) HSP 1 Score: 394.4 bits (1012), Expect = 6.9e-106 Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0
BLAST of PI0004349 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus]) HSP 1 Score: 393.3 bits (1009), Expect = 1.5e-105 Identity = 196/206 (95.15%), Postives = 202/206 (98.06%), Query Frame = 0
BLAST of PI0004349 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 393.3 bits (1009), Expect = 1.5e-105 Identity = 198/206 (96.12%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of PI0004349 vs. NCBI nr
Match: XP_022983269.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3 [Cucurbita maxima]) HSP 1 Score: 379.4 bits (973), Expect = 2.3e-101 Identity = 195/225 (86.67%), Postives = 205/225 (91.11%), Query Frame = 0
BLAST of PI0004349 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida]) HSP 1 Score: 378.3 bits (970), Expect = 5.1e-101 Identity = 194/207 (93.72%), Postives = 197/207 (95.17%), Query Frame = 0
BLAST of PI0004349 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) ) HSP 1 Score: 190.3 bits (482), Expect = 1.8e-48 Identity = 93/157 (59.24%), Postives = 117/157 (74.52%), Query Frame = 0
BLAST of PI0004349 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) ) HSP 1 Score: 190.3 bits (482), Expect = 1.8e-48 Identity = 93/157 (59.24%), Postives = 117/157 (74.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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