PI0004248 (gene) Melon (PI 482460) v1

Overview


Name	PI0004248
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr12: 10497666 .. 10500814 (-)
RNA-Seq Expression	PI0004248
Synteny	PI0004248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCAAGGGTCAACCCTCTACAGATATTTACACAATGTTAATAAACGTGTTTGGAAAGGTGAGCCTAAACAGGTTATTAAAAACTCTTTTATCAGTATTTGAATTTTGTTGTCTGATTGCTTTAGTACAGGTATGATGGATCAAATAATATCTAGCTTACTGAAGCGTTTAAATTCTGTTTATGGGTTTCAATGATTTCTTGACAATACTTTATCATTTTAGTTTCTTTTAACATTTATTATTGTTTTTTTTTGTAATACTTTATGCAAATATTTGGTAATTCTTCTTTCCTTCTCATTTTCTGAATCAGGATTTATACATAGTTAATTTAGCAACCGGGATAACTGGTCTTTTTTGTTCAATTTTGATATATTAATATTTTCTATTTCATTTTTCATGAAAATGAAAAGAATAAGGAAAAGGCATTTTGAGTTAATAACTAGTTCTGGGAAGATCCTCTGGTTTTTGGTCGGGACCAGGGTATAATTAGGTGAATGAACCTTATCATGGCATATGAAGTCAATTCATCAAACCACACCGTTGCATATCCATCATGTCTGGTTTAAATTAAGTTCAATTCAGGTCTCTTGAACGCATGCTTAAATTGAGTCCAAATGGAAGAAGCAATCTTCACATTTTTCACAAAAAAGGACATATCAGTTTATCTGGTAGGACTCCACTCTTCAATTTCTTCATCCTTTAAAATTCCTCTCAACCTCAGGTCTCACGTAGCATTATGAGAGGACCAATATTGAGTTTGGCCATAATGTCTACTCTTACAAAGAAAATCTCCAAATCCACCAAGAAAAAATGTCATATTTTTGTACATAAGGTGGTGGAAAATCCCAGGGCCATCTCTTTCAAACGGAAGAGACACCATTCTCCAGTTAAGAAGGTGTGACACACCATCCAAACTTGGTCCTACATAACTTTTTGTATGAAGTTTCTAATTTTTTTCTCAATTTCAAAGACAATATTGTTGTGCGCGTTAGAATGAAAAATAGGAATAAGTAGGAAACTTCAGAACCAACTAGTTACGGAGAAAAGGAATGAGTAGAAGACTTCGAGAGAGCCAATTACTTAAAATAATCCGCTCTCTTGTAACGAGCCAAGCACGCTTCAGTTGTCGAGCCTACAAGAAATCATTTCCATCACCAGATGTGAAAATTCCTTTTGGCTTAGGAGTATCTAGCAACGAAAACTCCAATATTAAAGAGAGCAGTCTCCTTTTGGGTATCCGAAATCCTCAATCACTTGCCCGTCCTTTTGAATGGAAGGATGAATACACCATACCAGCCACCTTAAGTTTTGCTTTCTTAAGGCCTGAAGCTTCTGTAAAGATATTGACAATCCTGAATAAAAGCACTGGAATCTACTGTAGTATTTATGTGGATTTCAAATTAGTTTTGATGTTTAATATTTTCCCTCCTAGTCTAATAATTATAGGTTTATGCAGGAAAGCAAGTCCTATATGGCATTAAAGATATTTGACAAAACGAGAAGTCAAAAGGTGCAAACCTAACATCTGCACCTTTACAGCTTTAGTAAAGGCACTTGCTAGAGAGGGACTTTGTGAGAAAACAGAAGAAATATTTGAGCAAATGCAACAAGCTGGTTACGAACCTGATGTCTATGCTTATAATGCTCTCTTGGAGTCATATAGGTAAAGTAAAACTAATCTGGTACGATCTTGTAGATATAGTCTTCATTCTTGAAAGTAAAGTGGGTATTCAGTTGTCACTTCCAAAGGGTCGACAGTACTTTGAAGGTCTGGCTGGCATATGGACATTGATGAGTAGTGAGCTTTAGTAGGCAATTGAAATTTAATTTTCCTCTTCTAACAATTGTAATATTTGACAATCCTTGTACTTTTTTTTTTTGGCAAGAACAAATTTCCTCTACATTTTTAATGCATCATGCTGCGGTTAAGAACAATGTAGAACAATTGCTTATAAATTTCATGTTTTGTGCTTAGGCTTTATGTTTCCATGTGTTATAAAATTTTAGACGATCGTAATAGCCCTTCAATGTAATTTTTTCTTTACTAAAAAGTATACCGTCTTGGTCATTTGCAGTCGTGCTGGTTTTCCATATGGAGCTACAGAAATATTTTCACTCATGCAACACATGGGATGTGATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCACGAAGGTATGAAAACTCAAGTTACATTTAGTAATTCTTCCATTAAGTTTCTTCTAATTGTTTCTCATTATAATAAAGATTTCTCATATTTTTTTTCAGATTGAAGAGACGAATTGATGATATTGGACAATGCGGTATTCAACTGACCTCCAAATCACGCTAACATGCTCTTGTTTGTTGATTCCACTCTTTTTGGTAATTTTCTTTTCAATCCATTATTGATTAGTAAAAGAGAAATTATCAGGTCCTACAATATAGTAATTGTAAAGGGAATGGATTTGTTACTGAGTTCAGGAGTTCCCCCATCAACATTTTAAGGATGTCCCTGAGAATGGTGACAACCATGGAAGAGTGTAATTTTCAGATTGGTAAGTTTGAGTTATTTTCATTCCTCTCTTCTTGGAATACTGGTCTGATCCTCATGCATGATGTAAGAGTTTCCTATTAAATTTGTTGGTGTGTACTAAGAAAAGTTGAACATGCTTAATGGAATTTACAAGAGAACAATTAATGTCTTAAGACAAGGGAATCCTTTGTCTCCCTTTCTGTTCTTACTTGTCGTGGATGTCTTAAGCCGGCCCATTTTCAAGGGGTGGAAGGAAACCTAATTGAATCATTTAGGGTTGGTGGGAATGAAGTGGCCTTATTGCATCTTCAATTTGCGGATGATGCTATGTTATTCTGCTCTGGGAAAGTGGAGTCCTTGATCTATTGTGGCTTAATTTTAATAATGTCGAGGCTCAAAATCAATAGGAACAAATGTACAATTTTGGTAATTAATAGGTGATCAAGAAAAGCTCAAGAGGTGGGTGGAGGCATTTGATTGTGAGGTGGGTTCTCTCCCTTTTTCTTACCTTGAGCTTCCGTTGGGTGGTAACTTGAGAGCTACAACATTCTGGAATCCAATTTGTGAGAAGATTCAAAAGAGGCTTTTAAGGGTTTCTCTCTAA

mRNA sequence

ATGGCTGCCAAGGGTCAACCCTCTACAGATATTTACACAATGTTAATAAACGTGTTTGGAAAGGTGAGCCTAAACAGTCGTGCTGGTTTTCCATATGGAGCTACAGAAATATTTTCACTCATGCAACACATGGGATGTGATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCACGAAGGTGATCAAGAAAAGCTCAAGAGGTGGGTGGAGGCATTTGATTGTGAGGTGGGTTCTCTCCCTTTTTCTTACCTTGAGCTTCCGTTGGGTGGTAACTTGAGAGCTACAACATTCTGGAATCCAATTTGTGAGAAGATTCAAAAGAGGCTTTTAAGGGTTTCTCTCTAA

Coding sequence (CDS)

ATGGCTGCCAAGGGTCAACCCTCTACAGATATTTACACAATGTTAATAAACGTGTTTGGAAAGGTGAGCCTAAACAGTCGTGCTGGTTTTCCATATGGAGCTACAGAAATATTTTCACTCATGCAACACATGGGATGTGATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCACGAAGGTGATCAAGAAAAGCTCAAGAGGTGGGTGGAGGCATTTGATTGTGAGGTGGGTTCTCTCCCTTTTTCTTACCTTGAGCTTCCGTTGGGTGGTAACTTGAGAGCTACAACATTCTGGAATCCAATTTGTGAGAAGATTCAAAAGAGGCTTTTAAGGGTTTCTCTCTAA

Protein sequence

MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEAFDCEVGSLPFSYLELPLGGNLRATTFWNPICEKIQKRLLRVSL

Homology

[Close]

BLAST of PI0004248 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.3e-18
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  +      SRAG+PYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 331 EPDVYVYNALMESY------SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 390

Query: 66  H---EGDQEKLKR 76
           H   E   E++KR
Sbjct: 391 HSDAEAVFEEMKR 397

[Close]

BLAST of PI0004248 vs. ExPASy Swiss-Prot
Match: Q9SSF9 (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX=3702 GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 24/74 (32.43%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P+T  Y  LI+ +G      RA +   A  +F+ MQ  GC+PDR +Y  ++D + +AG 
Sbjct: 391 KPNTVTYNRLIHSYG------RANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGF 450

Query: 66  HEGDQEKLKRWVEA 80
            +   +  +R  EA
Sbjct: 451 LDIAMDMYQRMQEA 458

[Close]

BLAST of PI0004248 vs. ExPASy Swiss-Prot
Match: Q8GYP6 (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX=3702 GN=At1g18900 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG 65
           QP+T  Y  LI+ +G      RA +   A  +F+ MQ  GC PDR +Y  ++D + +AG
Sbjct: 396 QPNTVTYNRLIHSYG------RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448

[Close]

BLAST of PI0004248 vs. ExPASy Swiss-Prot
Match: Q10PZ4 (Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0215900 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 22/60 (36.67%), Postives = 31/60 (51.67%), Query Frame = 0


Query: 22  VSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG-----LHEGDQEKLKRW 77
           +S     G P  A E F  M   GC PD  +Y+ ++DAYGRAG     L   D+ + ++W
Sbjct: 191 ISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAGDAETALRLYDRARAEKW 250

[Close]

BLAST of PI0004248 vs. ExPASy Swiss-Prot
Match: Q8GWE0 (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P67 PE=1 SV=3)

HSP 1 Score: 45.1 bits (105), Expect = 6.8e-04
Identity = 22/60 (36.67%), Postives = 31/60 (51.67%), Query Frame = 0


Query: 22  VSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG-----LHEGDQEKLKRW 77
           +S   + G P  A E F  M   GC+PD  +   M+DAYGRAG     L   D+ + ++W
Sbjct: 217 ISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKW 276

[Close]

BLAST of PI0004248 vs. ExPASy TrEMBL
Match: A0A0A0LYJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701340 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.2e-41
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAY 60
          MAAK QPSTDIYTMLINV+GKVSLNS AGFP+GATEIFSLMQ+MGC PDRASYNIMVDAY
Sbjct: 1  MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60

Query: 61 GRAGLHEGDQEKLKRWVEAFDCEVGSLPFSYLEL 95
          GRAGLHEGDQ+KLK+W EAFDCEVGSLP SYL L
Sbjct: 61 GRAGLHEGDQDKLKKWAEAFDCEVGSLPSSYLGL 94

[Close]

BLAST of PI0004248 vs. ExPASy TrEMBL
Match: A0A2P2L2Y1 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  +G      RAGFPYG+ EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 309 EPDVYAYNALMEAYG------RAGFPYGSAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 368

Query: 66  HEGDQEKLKRWVE 79
           H+G  + LKRW E
Sbjct: 369 HKG-LDNLKRWRE 374

[Close]

BLAST of PI0004248 vs. ExPASy TrEMBL
Match: A0A6V7NPK6 (PPR_long domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS3762 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.3e-17
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 7   PSTDIYTMLINVFGKVSL-----------------------------NSRAGFPYGATEI 66
           PS + YT++IN++GK  L                              SRAGFPYG++EI
Sbjct: 213 PSAETYTLMINIYGKEGLCEKAEEVFEQLQEAGHEPDVYAYNALMEAYSRAGFPYGSSEI 272

Query: 67  FSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR 76
           FSLMQHMGC+PDRASYNI+VDA+GRAGLHE  Q   E+LKR
Sbjct: 273 FSLMQHMGCEPDRASYNILVDAFGRAGLHEDAQATFEELKR 313

[Close]

BLAST of PI0004248 vs. ExPASy TrEMBL
Match: A0A1U8B5N5 (pentatricopeptide repeat-containing protein At2g35130 OS=Nelumbo nucifera OX=4432 GN=LOC104611004 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 335 EPDVYTYNALMEAY------SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 394

Query: 66  HEGDQ---EKLKR 76
           HE  Q   E+LKR
Sbjct: 395 HEDAQAVFEELKR 401

[Close]

BLAST of PI0004248 vs. ExPASy TrEMBL
Match: A0A6P6FTH9 (pentatricopeptide repeat-containing protein At2g35130 isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107420930 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 50/93 (53.76%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 4   KGQPSTDIYTMLINVFGKVSL------------------NSRAGFPYGATEIFSLMQHMG 63
           K +P+   YT L+N F +  L                  + RAGFPYGA EIFSLMQHMG
Sbjct: 290 KCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEAGHEPDVRAGFPYGAAEIFSLMQHMG 349

Query: 64  CDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR 76
           C+PDRASYNI+VDAYGRAGLHE  Q   E++KR
Sbjct: 350 CEPDRASYNIIVDAYGRAGLHEDAQAAFEEMKR 382

[Close]

BLAST of PI0004248 vs. NCBI nr
Match: KAE8653657.1 (hypothetical protein Csa_007366 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-27
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAY 60
          MAAK QPSTDIYTMLINV+GKVSLNS AGFP+GATEIFSLMQ+MGC PDRASYNIMVDAY
Sbjct: 1  MAAKCQPSTDIYTMLINVYGKVSLNSCAGFPFGATEIFSLMQYMGCYPDRASYNIMVDAY 60

Query: 61 GRAGLHEG 69
          GRAGLHEG
Sbjct: 61 GRAGLHEG 68

[Close]

BLAST of PI0004248 vs. NCBI nr
Match: CAD1820551.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-17
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 7   PSTDIYTMLINVFGKVSL-----------------------------NSRAGFPYGATEI 66
           PS + YT++IN++GK  L                              SRAGFPYG++EI
Sbjct: 213 PSAETYTLMINIYGKEGLCEKAEEVFEQLQEAGHEPDVYAYNALMEAYSRAGFPYGSSEI 272

Query: 67  FSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR 76
           FSLMQHMGC+PDRASYNI+VDA+GRAGLHE  Q   E+LKR
Sbjct: 273 FSLMQHMGCEPDRASYNILVDAFGRAGLHEDAQATFEELKR 313

[Close]

BLAST of PI0004248 vs. NCBI nr
Match: XP_010276204.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Nelumbo nucifera])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 335 EPDVYTYNALMEAY------SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 394

Query: 66  HEGDQ---EKLKR 76
           HE  Q   E+LKR
Sbjct: 395 HEDAQAVFEELKR 401

[Close]

BLAST of PI0004248 vs. NCBI nr
Match: DAD43917.1 (TPA_asm: hypothetical protein HUJ06_002147 [Nelumbo nucifera])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P    Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 331 EPDVYTYNALMEAY------SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 390

Query: 66  HEGDQ---EKLKR 76
           HE  Q   E+LKR
Sbjct: 391 HEDAQAVFEELKR 397

[Close]

BLAST of PI0004248 vs. NCBI nr
Match: KAF9587603.1 (hypothetical protein IFM89_004435 [Coptis chinensis])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 577 EPDVYVYNALMEAY------SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 636

Query: 66  HEGDQ---EKLKR 76
           HE  +   E+LKR
Sbjct: 637 HEDARSVFEELKR 643

[Close]

BLAST of PI0004248 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-19
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  +      SRAG+PYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 331 EPDVYVYNALMESY------SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 390

Query: 66  H---EGDQEKLKR 76
           H   E   E++KR
Sbjct: 391 HSDAEAVFEEMKR 397

[Close]

BLAST of PI0004248 vs. TAIR 10
Match: AT2G35130.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-19
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P   +Y  L+  +      SRAG+PYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGL
Sbjct: 353 EPDVYVYNALMESY------SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 412

Query: 66  H---EGDQEKLKR 76
           H   E   E++KR
Sbjct: 413 HSDAEAVFEEMKR 419

[Close]

BLAST of PI0004248 vs. TAIR 10
Match: AT1G74750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 24/74 (32.43%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGL 65
           +P+T  Y  LI+ +G      RA +   A  +F+ MQ  GC+PDR +Y  ++D + +AG 
Sbjct: 391 KPNTVTYNRLIHSYG------RANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGF 450

Query: 66  HEGDQEKLKRWVEA 80
            +   +  +R  EA
Sbjct: 451 LDIAMDMYQRMQEA 458

[Close]

BLAST of PI0004248 vs. TAIR 10
Match: AT1G18900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG 65
           QP+T  Y  LI+ +G      RA +   A  +F+ MQ  GC PDR +Y  ++D + +AG
Sbjct: 396 QPNTVTYNRLIHSYG------RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448

[Close]

BLAST of PI0004248 vs. TAIR 10
Match: AT1G18900.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 6   QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG 65
           QP+T  Y  LI+ +G      RA +   A  +F+ MQ  GC PDR +Y  ++D + +AG
Sbjct: 396 QPNTVTYNRLIHSYG------RANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448

The following BLAST results are available for this feature:

BLAST of PI0004248 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82178	6.3e-18	61.64	Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX...	[more]
Q9SSF9	3.6e-05	32.43	Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana OX...	[more]
Q8GYP6	1.8e-04	37.29	Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana OX...	[more]
Q10PZ4	3.1e-04	36.67	Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza...	[more]
Q8GWE0	6.8e-04	36.67	Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidop...	[more]

BLAST of PI0004248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYJ9	4.2e-41	88.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701340 PE=4 SV=1	[more]
A0A2P2L2Y1	1.5e-17	64.38	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A6V7NPK6	4.3e-17	50.50	PPR_long domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 G...	[more]
A0A1U8B5N5	1.2e-16	65.75	pentatricopeptide repeat-containing protein At2g35130 OS=Nelumbo nucifera OX=443...	[more]
A0A6P6FTH9	1.6e-16	53.76	pentatricopeptide repeat-containing protein At2g35130 isoform X2 OS=Ziziphus juj...	[more]

BLAST of PI0004248 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653657.1	7.2e-27	91.18	hypothetical protein Csa_007366 [Cucumis sativus]	[more]
CAD1820551.1	8.8e-17	50.50	unnamed protein product [Ananas comosus var. bracteatus]	[more]
XP_010276204.1	2.6e-16	65.75	PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Nelumbo nucife...	[more]
DAD43917.1	2.6e-16	65.75	TPA_asm: hypothetical protein HUJ06_002147 [Nelumbo nucifera]	[more]
KAF9587603.1	2.6e-16	64.38	hypothetical protein IFM89_004435 [Coptis chinensis]	[more]

BLAST of PI0004248 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35130.1	4.5e-19	61.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G35130.2	4.5e-19	61.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74750.1	2.6e-06	32.43	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G18900.1	1.3e-05	37.29	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G18900.2	1.3e-05	37.29	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 52..67 e-value: 0.014 score: 15.6 coord: 25..46 e-value: 1.3 score: 9.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..86 e-value: 1.8E-10 score: 42.8
None	No IPR available	PANTHER	PTHR47942:SF47	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 26..72
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 26..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0004248.1	PI0004248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding