PI0003790 (gene) Melon (PI 482460) v1

Overview


Name	PI0003790
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Beta-galactosidase
Location	chr04: 17650746 .. 17651282 (+)
RNA-Seq Expression	PI0003790
Synteny	PI0003790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTCGAAGGGCGGCATAAGTTTGGTTTTCTGACAGGGGAAATACCTCGTCCTTCACCTGGAGACCCACAGGAATGTTACTGGAAGGGGGAGGATTCTCTTCTTCGATCCACACTGATCAATAGCATGGAGCCAAATATCGAAAAACCTTTATTATACACTGCAAGTGCTAAGGATATTTGGGACACAACCCGGACATTATATTCCAACCGTCAAAATGCCTCTCGCCTATACACATTACGGAAACAGGTTCATGAGTGCAAGCAAGGGACCATGGATGTTACAACCTATTTTAACAAGCTCTCTCTTATCTGGCAGGAGATAGATCTTTGCAGAGAACTTGTCTGGAGCAGTTCTCGTGATAGTATCCAGTACTCAAGGGTCGAAGAGATTGACAGGATTTATGACTTTCTGGCTGGCCTTAATTCTAAGTTTGATATAGTCTGTGGGCGTATACTAGGTCAAAGACCGATTCCTCCCTTATGGAGGTTTGTTCTGAAGTTCGACTTGAGGAGGATCGTACAAGTGCTATGA

mRNA sequence

ATGGTCCTCGAAGGGCGGCATAAGTTTGGTTTTCTGACAGGGGAAATACCTCGTCCTTCACCTGGAGACCCACAGGAATGTTACTGGAAGGGGGAGGATTCTCTTCTTCGATCCACACTGATCAATAGCATGGAGCCAAATATCGAAAAACCTTTATTATACACTGCAAGTGCTAAGGATATTTGGGACACAACCCGGACATTATATTCCAACCGTCAAAATGCCTCTCGCCTATACACATTACGGAAACAGGTTCATGAGTGCAAGCAAGGGACCATGGATGTTACAACCTATTTTAACAAGCTCTCTCTTATCTGGCAGGAGATAGATCTTTGCAGAGAACTTGTCTGGAGCAGTTCTCGTGATAGTATCCAGTACTCAAGGGTCGAAGAGATTGACAGGATTTATGACTTTCTGGCTGGCCTTAATTCTAAGTTTGATATAGTCTGTGGGCGTATACTAGGTCAAAGACCGATTCCTCCCTTATGGAGGTTTGTTCTGAAGTTCGACTTGAGGAGGATCGTACAAGTGCTATGA

Coding sequence (CDS)

ATGGTCCTCGAAGGGCGGCATAAGTTTGGTTTTCTGACAGGGGAAATACCTCGTCCTTCACCTGGAGACCCACAGGAATGTTACTGGAAGGGGGAGGATTCTCTTCTTCGATCCACACTGATCAATAGCATGGAGCCAAATATCGAAAAACCTTTATTATACACTGCAAGTGCTAAGGATATTTGGGACACAACCCGGACATTATATTCCAACCGTCAAAATGCCTCTCGCCTATACACATTACGGAAACAGGTTCATGAGTGCAAGCAAGGGACCATGGATGTTACAACCTATTTTAACAAGCTCTCTCTTATCTGGCAGGAGATAGATCTTTGCAGAGAACTTGTCTGGAGCAGTTCTCGTGATAGTATCCAGTACTCAAGGGTCGAAGAGATTGACAGGATTTATGACTTTCTGGCTGGCCTTAATTCTAAGTTTGATATAGTCTGTGGGCGTATACTAGGTCAAAGACCGATTCCTCCCTTATGGAGGTTTGTTCTGAAGTTCGACTTGAGGAGGATCGTACAAGTGCTATGA

Protein sequence

MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKDIWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSSRDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPLWRFVLKFDLRRIVQVL

Homology

[Close]

BLAST of PI0003790 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 305

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 306 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 347

[Close]

BLAST of PI0003790 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 305

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 306 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 347

[Close]

BLAST of PI0003790 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 305

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 306 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 347

[Close]

BLAST of PI0003790 vs. ExPASy TrEMBL
Match: A0A5A7V0Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00520 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 461 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 520

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 521 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 580

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 581 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 622

[Close]

BLAST of PI0003790 vs. ExPASy TrEMBL
Match: A0A5A7UGB2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00290 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.4e-69
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 215 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 274

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 275 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 334

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 335 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 376

[Close]

BLAST of PI0003790 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 305

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 306 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 347

[Close]

BLAST of PI0003790 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 305

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 306 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 347

[Close]

BLAST of PI0003790 vs. NCBI nr
Match: KAA0034386.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 243 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 302

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 303 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 362

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 363 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 404

[Close]

BLAST of PI0003790 vs. NCBI nr
Match: TYJ97256.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 186 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 245

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 246 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 305

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 306 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 347

[Close]

BLAST of PI0003790 vs. NCBI nr
Match: TYK16957.1 (ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 124/162 (76.54%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MVLEGRHKFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKD 60
           M LEGR++FGFLTGEI RP PGD  E  WKGEDSL+RS LINSMEP I KPLLY  +AKD
Sbjct: 766 MFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGKPLLYATTAKD 825

Query: 61  IWDTTRTLYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELVWSSS 120
           +WDTT+TLYS RQNASRLYTLRKQVH CKQGT+DVTTYFNKLSL+WQE+DLCRE VW + 
Sbjct: 826 LWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCRETVWDTP 885

Query: 121 RDSIQYSRVEEIDRIYDFLAGLNSKFDIVCGRILGQRPIPPL 163
            DS QY+++EE DR+YDFLAGLN KFD VCGRILGQRP+P L
Sbjct: 886 NDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSL 927

[Close]

BLAST of PI0003790 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 45/162 (27.78%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 8   KFGFLTGEIPRPSPGDPQECYWKGEDSLLRSTLINSMEPNIEKPLLYTASAKDIWDTTRT 67
           KFGF+ G +P+P P  P    W+  ++++   L+NSM   + + ++Y  +A  +W+  R 
Sbjct: 58  KFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRR 117

Query: 68  LYSNRQNASRLYTLRKQVHECKQGTMDVTTYFNKLSLIWQEIDLCRELV-----WSSSRD 127
           ++    +  ++Y LR+++   +QG   V  YF KLS +W E+     +        +   
Sbjct: 118 VFVPCVDL-KIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCEC 177

Query: 128 SIQYSRVEEIDRIYDFLAG--LNSKFDIVCGRILGQRPIPPL 163
           + +     E ++ Y+FL G  LN  F+ V  +I+ Q+P P L
Sbjct: 178 TKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSL 218

The following BLAST results are available for this feature:

BLAST of PI0003790 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJK7	5.4e-69	76.54	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	5.4e-69	76.54	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7SM64	5.4e-69	76.54	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5A7V0Y9	5.4e-69	76.54	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00...	[more]
A0A5A7UGB2	5.4e-69	76.54	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055...	[more]

BLAST of PI0003790 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99952.1	1.1e-68	76.54	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
TYK08054.1	1.1e-68	76.54	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0034386.1	1.1e-68	76.54	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYJ97256.1	1.1e-68	76.54	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK16957.1	1.1e-68	76.54	ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa]	[more]

BLAST of PI0003790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	1.3e-14	27.78	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 29..110 e-value: 5.9E-8 score: 32.6
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 2..157
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 2..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003790.1	PI0003790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0006116	NADH oxidation
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0043564	Ku70:Ku80 complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003954	NADH dehydrogenase activity
molecular_function	GO:0042162	telomeric DNA binding