Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGATTCATCGCACTGGGTTGACCAAGGCGGTCACTTTTGTTGGCCCATTTTATCCTTAGTTGATTCACGAACTAATTGTTAATCTTCCCGTTGATTTTAATGATCCTAGTGTTGCTGAGTATCGAAAGGTGCATGTCCGTGGTTTGTTTTTTACTTTGTCTCCTACTATTATCAATACTTTTCTTGAAGTCAATTTGCCTTCAGATTTTTCTATTTCTCTATCGTCTCCTGAGTTATTGGCTTGTGAGTTTACTAGTGGGACAATTCGTGTGTGGCCGGATGATGGTCAACTTCCTGCTATCTCTTTAAGTGTCAAATATGTTATTCTTCACAAGATAGGGAATGCAAATTTGTACCCCTCCACCCATACGTCCACTGTCTCCACAACCTTGGCTAATCTAATCTATCTCATTGGTATTAGTTCCCTAGTGGATGTGGGCCAATTTGTGTTTAACCAGCTGCTTCGGCATGTCGAGACTTTTGGGGTTAAAATTCCCATTGGCTTTCATCATCTTCTTTGCAGCATTATGATTGCTCAGCATCCCTCTGTGTTGACTAATCAGGATCCTCCTGGCCCTGACCCTAAGGTGCTCACCCTTAGCTATCAGTTGTTTTAG
mRNA sequence
ATGGAGTTGATTCATCGCACTGGGTTGACCAAGGCGTTGATTCACGAACTAATTGTTAATCTTCCCGTTGATTTTAATGATCCTAGTGTTGCTGAGTATCGAAAGGTGCATGTCCGTGGTTTGTTTTTTACTTTGTCTCCTACTATTATCAATACTTTTCTTGAAGTCAATTTGCCTTCAGATTTTTCTATTTCTCTATCGTCTCCTGAGTTATTGGCTTGTGAGTTTACTAGTGGGACAATTCGTGTGTGGCCGGATGATGGTCAACTTCCTGCTATCTCTTTAAGTGTCAAATATGTTATTCTTCACAAGATAGGGAATGCAAATTTGTACCCCTCCACCCATACGTCCACTGTCTCCACAACCTTGGCTAATCTAATCTATCTCATTGGTATTAGTTCCCTAGTGGATGTGGGCCAATTTGTGTTTAACCAGCTGCTTCGGCATGTCGAGACTTTTGGGGTTAAAATTCCCATTGGCTTTCATCATCTTCTTTGCAGCATTATGATTGCTCAGCATCCCTCTGTGTTGACTAATCAGGATCCTCCTGGCCCTGACCCTAAGGTGCTCACCCTTAGCTATCAGTTGTTTTAG
Coding sequence (CDS)
ATGGAGTTGATTCATCGCACTGGGTTGACCAAGGCGTTGATTCACGAACTAATTGTTAATCTTCCCGTTGATTTTAATGATCCTAGTGTTGCTGAGTATCGAAAGGTGCATGTCCGTGGTTTGTTTTTTACTTTGTCTCCTACTATTATCAATACTTTTCTTGAAGTCAATTTGCCTTCAGATTTTTCTATTTCTCTATCGTCTCCTGAGTTATTGGCTTGTGAGTTTACTAGTGGGACAATTCGTGTGTGGCCGGATGATGGTCAACTTCCTGCTATCTCTTTAAGTGTCAAATATGTTATTCTTCACAAGATAGGGAATGCAAATTTGTACCCCTCCACCCATACGTCCACTGTCTCCACAACCTTGGCTAATCTAATCTATCTCATTGGTATTAGTTCCCTAGTGGATGTGGGCCAATTTGTGTTTAACCAGCTGCTTCGGCATGTCGAGACTTTTGGGGTTAAAATTCCCATTGGCTTTCATCATCTTCTTTGCAGCATTATGATTGCTCAGCATCCCTCTGTGTTGACTAATCAGGATCCTCCTGGCCCTGACCCTAAGGTGCTCACCCTTAGCTATCAGTTGTTTTAG
Protein sequence
MELIHRTGLTKALIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELLACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGISSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTLSYQLF
Homology
BLAST of PI0003667 vs. ExPASy TrEMBL
Match:
A0A1S3C780 (uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=4 SV=1)
HSP 1 Score: 213.4 bits (542), Expect = 8.6e-52
Identity = 99/184 (53.80%), Postives = 131/184 (71.20%), Query Frame = 0
Query: 14 IHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELLA 73
I E IVNLP D ND EY+KVHVRG F +SPT+IN FL+ +LP+D+S++L PE L
Sbjct: 222 IREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFLKHSLPTDYSVTLPLPEQLT 281
Query: 74 CEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGIS 133
E +SG++R WP DG P + S+KY ILHKIG N +P+TH S VSTTL N ++LIG
Sbjct: 282 LELSSGSVRQWPCDGYFPIVKASIKYAILHKIGITNWHPTTHLSIVSTTLVNSLFLIGTG 341
Query: 134 SLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTLS 193
S +DVG F+F +LRHV+TFGV +P F LLC+ +++QHP VLT +D P P+ ++LS
Sbjct: 342 SKIDVGDFIFKHVLRHVDTFGVNVPSFFPQLLCAFLLSQHPKVLTYEDIQCPTPRTISLS 401
Query: 194 YQLF 198
Y+LF
Sbjct: 402 YKLF 405
BLAST of PI0003667 vs. ExPASy TrEMBL
Match:
A0A5A7VCX5 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00340 PE=4 SV=1)
HSP 1 Score: 202.6 bits (514), Expect = 1.5e-48
Identity = 95/185 (51.35%), Postives = 134/185 (72.43%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
LI EL+VNLP DFND S E+ KVH+RG+ + +SP ++N FL++ LP++++I S+PE L
Sbjct: 488 LICELVVNLPSDFNDLSTEEFYKVHIRGVCYNVSPELLNQFLDITLPTNYAILYSTPECL 547
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GT+ VWP DGQLP SL+VKY IL++IG +N PSTH S +STTL + +YL+G
Sbjct: 548 AEELTEGTVPVWPVDGQLPIASLTVKYAILYQIGISNRIPSTHASIISTTLGHFVYLVGT 607
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+VG+F+FN LLRHV+TF + IPI F LL +++Q P++LT D G P+++ +
Sbjct: 608 RVKVNVGKFIFNHLLRHVDTFAIHIPICFPRLLSGFILSQQPTILTPLDTVGTTPRIIPV 667
Query: 193 SYQLF 198
S +LF
Sbjct: 668 SMRLF 672
BLAST of PI0003667 vs. ExPASy TrEMBL
Match:
A0A5A7SIG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00600 PE=4 SV=1)
HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 95/185 (51.35%), Postives = 133/185 (71.89%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
L+ ELIVNLP DFND S EY+KVH+RG+ F +SP ++NT+L + LP+D+++S + E L
Sbjct: 31 LMRELIVNLPSDFNDSSADEYQKVHIRGICFNVSPELLNTYLGLALPADYAVSYPTLERL 90
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GT+ VW DGQLP SL+VKY ILH+I +N PSTH ST+ST+L + +YL+G
Sbjct: 91 AEELTDGTVPVWAVDGQLPVASLTVKYSILHRIEISNWIPSTHASTISTSLGHFVYLVGT 150
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+VG+F+FN LLRHV+TFG+ IPI F +L ++AQ ++LT + G P+V+ L
Sbjct: 151 GVKVNVGEFIFNHLLRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAPRVIPL 210
Query: 193 SYQLF 198
+ +LF
Sbjct: 211 NMRLF 215
BLAST of PI0003667 vs. ExPASy TrEMBL
Match:
A0A5A7TLH4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold266G00100 PE=4 SV=1)
HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 97/185 (52.43%), Postives = 132/185 (71.35%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
LI ELIVNLP DFNDPS EY+KVH+RG+ F +SP ++N++L + LP+D+++S +PE L
Sbjct: 350 LIRELIVNLPSDFNDPSADEYQKVHIRGVCFNVSPELLNSYLGIILPADYAVSYPTPERL 409
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GT+ VW DGQLP SL+VKY ILH+IG N S H ST+ST+L + +YL+GI
Sbjct: 410 AKELTGGTVPVWLVDGQLPIASLTVKYSILHRIGITNWILSMHASTISTSLGHFVYLVGI 469
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+VG+F+FN LLRHV+TF + I I F +L ++AQ ++LT D G P+V+ L
Sbjct: 470 GVKVNVGEFIFNHLLRHVDTFAIHILICFPRILSGFILAQQSTILTPLDIVGSAPRVIPL 529
Query: 193 SYQLF 198
S +LF
Sbjct: 530 SMRLF 534
BLAST of PI0003667 vs. ExPASy TrEMBL
Match:
A0A5D3CWQ1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00800 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 2.9e-47
Identity = 93/185 (50.27%), Postives = 130/185 (70.27%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
L+ ELIVNLP DFNDPS EY+KVH+RG++F +SP ++NT+L ++LP+D+++S +PE L
Sbjct: 652 LMRELIVNLPSDFNDPSADEYQKVHIRGVYFNMSPELLNTYLGLSLPADYAVSYPTPERL 711
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GTI VWP DGQL L++KY ILH+I +N PSTH T+ST+L + +YL+G
Sbjct: 712 AEELTGGTIPVWPVDGQLQVAYLTIKYSILHRIRISNWIPSTHAFTISTSLGHFVYLVGT 771
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+ +F+FN LLRHV+TF + IPI F +L ++AQ + LT+ D G P+V+ L
Sbjct: 772 GVKVNASEFIFNHLLRHVDTFAIHIPICFPRILSEFLLAQQSTNLTSLDTIGTGPRVIPL 831
Query: 193 SYQLF 198
LF
Sbjct: 832 KMHLF 836
BLAST of PI0003667 vs. NCBI nr
Match:
XP_008458113.1 (PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo])
HSP 1 Score: 213.4 bits (542), Expect = 1.8e-51
Identity = 99/184 (53.80%), Postives = 131/184 (71.20%), Query Frame = 0
Query: 14 IHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELLA 73
I E IVNLP D ND EY+KVHVRG F +SPT+IN FL+ +LP+D+S++L PE L
Sbjct: 222 IREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFLKHSLPTDYSVTLPLPEQLT 281
Query: 74 CEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGIS 133
E +SG++R WP DG P + S+KY ILHKIG N +P+TH S VSTTL N ++LIG
Sbjct: 282 LELSSGSVRQWPCDGYFPIVKASIKYAILHKIGITNWHPTTHLSIVSTTLVNSLFLIGTG 341
Query: 134 SLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTLS 193
S +DVG F+F +LRHV+TFGV +P F LLC+ +++QHP VLT +D P P+ ++LS
Sbjct: 342 SKIDVGDFIFKHVLRHVDTFGVNVPSFFPQLLCAFLLSQHPKVLTYEDIQCPTPRTISLS 401
Query: 194 YQLF 198
Y+LF
Sbjct: 402 YKLF 405
BLAST of PI0003667 vs. NCBI nr
Match:
KAA0065488.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 202.6 bits (514), Expect = 3.1e-48
Identity = 95/185 (51.35%), Postives = 134/185 (72.43%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
LI EL+VNLP DFND S E+ KVH+RG+ + +SP ++N FL++ LP++++I S+PE L
Sbjct: 488 LICELVVNLPSDFNDLSTEEFYKVHIRGVCYNVSPELLNQFLDITLPTNYAILYSTPECL 547
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GT+ VWP DGQLP SL+VKY IL++IG +N PSTH S +STTL + +YL+G
Sbjct: 548 AEELTEGTVPVWPVDGQLPIASLTVKYAILYQIGISNRIPSTHASIISTTLGHFVYLVGT 607
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+VG+F+FN LLRHV+TF + IPI F LL +++Q P++LT D G P+++ +
Sbjct: 608 RVKVNVGKFIFNHLLRHVDTFAIHIPICFPRLLSGFILSQQPTILTPLDTVGTTPRIIPV 667
Query: 193 SYQLF 198
S +LF
Sbjct: 668 SMRLF 672
BLAST of PI0003667 vs. NCBI nr
Match:
KAA0025424.1 (uncharacterized protein E6C27_scaffold417G00080 [Cucumis melo var. makuwa] >TYK04758.1 uncharacterized protein E5676_scaffold68G00600 [Cucumis melo var. makuwa])
HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 95/185 (51.35%), Postives = 133/185 (71.89%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
L+ ELIVNLP DFND S EY+KVH+RG+ F +SP ++NT+L + LP+D+++S + E L
Sbjct: 31 LMRELIVNLPSDFNDSSADEYQKVHIRGICFNVSPELLNTYLGLALPADYAVSYPTLERL 90
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GT+ VW DGQLP SL+VKY ILH+I +N PSTH ST+ST+L + +YL+G
Sbjct: 91 AEELTDGTVPVWAVDGQLPVASLTVKYSILHRIEISNWIPSTHASTISTSLGHFVYLVGT 150
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+VG+F+FN LLRHV+TFG+ IPI F +L ++AQ ++LT + G P+V+ L
Sbjct: 151 GVKVNVGEFIFNHLLRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAPRVIPL 210
Query: 193 SYQLF 198
+ +LF
Sbjct: 211 NMRLF 215
BLAST of PI0003667 vs. NCBI nr
Match:
KAA0042431.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 199.1 bits (505), Expect = 3.5e-47
Identity = 97/185 (52.43%), Postives = 132/185 (71.35%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
LI ELIVNLP DFNDPS EY+KVH+RG+ F +SP ++N++L + LP+D+++S +PE L
Sbjct: 350 LIRELIVNLPSDFNDPSADEYQKVHIRGVCFNVSPELLNSYLGIILPADYAVSYPTPERL 409
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GT+ VW DGQLP SL+VKY ILH+IG N S H ST+ST+L + +YL+GI
Sbjct: 410 AKELTGGTVPVWLVDGQLPIASLTVKYSILHRIGITNWILSMHASTISTSLGHFVYLVGI 469
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+VG+F+FN LLRHV+TF + I I F +L ++AQ ++LT D G P+V+ L
Sbjct: 470 GVKVNVGEFIFNHLLRHVDTFAIHILICFPRILSGFILAQQSTILTPLDIVGSAPRVIPL 529
Query: 193 SYQLF 198
S +LF
Sbjct: 530 SMRLF 534
BLAST of PI0003667 vs. NCBI nr
Match:
TYK16303.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 198.4 bits (503), Expect = 5.9e-47
Identity = 93/185 (50.27%), Postives = 130/185 (70.27%), Query Frame = 0
Query: 13 LIHELIVNLPVDFNDPSVAEYRKVHVRGLFFTLSPTIINTFLEVNLPSDFSISLSSPELL 72
L+ ELIVNLP DFNDPS EY+KVH+RG++F +SP ++NT+L ++LP+D+++S +PE L
Sbjct: 652 LMRELIVNLPSDFNDPSADEYQKVHIRGVYFNMSPELLNTYLGLSLPADYAVSYPTPERL 711
Query: 73 ACEFTSGTIRVWPDDGQLPAISLSVKYVILHKIGNANLYPSTHTSTVSTTLANLIYLIGI 132
A E T GTI VWP DGQL L++KY ILH+I +N PSTH T+ST+L + +YL+G
Sbjct: 712 AEELTGGTIPVWPVDGQLQVAYLTIKYSILHRIRISNWIPSTHAFTISTSLGHFVYLVGT 771
Query: 133 SSLVDVGQFVFNQLLRHVETFGVKIPIGFHHLLCSIMIAQHPSVLTNQDPPGPDPKVLTL 192
V+ +F+FN LLRHV+TF + IPI F +L ++AQ + LT+ D G P+V+ L
Sbjct: 772 GVKVNASEFIFNHLLRHVDTFAIHIPICFPRILSEFLLAQQSTNLTSLDTIGTGPRVIPL 831
Query: 193 SYQLF 198
LF
Sbjct: 832 KMHLF 836
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3C780 | 8.6e-52 | 53.80 | uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=... | [more] |
A0A5A7VCX5 | 1.5e-48 | 51.35 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A5A7SIG0 | 1.7e-47 | 51.35 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TLH4 | 1.7e-47 | 52.43 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5D3CWQ1 | 2.9e-47 | 50.27 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G0... | [more] |
Match Name | E-value | Identity | Description | |
XP_008458113.1 | 1.8e-51 | 53.80 | PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo] | [more] |
KAA0065488.1 | 3.1e-48 | 51.35 | putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag... | [more] |
KAA0025424.1 | 3.5e-47 | 51.35 | uncharacterized protein E6C27_scaffold417G00080 [Cucumis melo var. makuwa] >TYK0... | [more] |
KAA0042431.1 | 3.5e-47 | 52.43 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
TYK16303.1 | 5.9e-47 | 50.27 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |