PI0003520 (gene) Melon (PI 482460) v1

Overview
NamePI0003520
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr07: 14357127 .. 14357357 (-)
RNA-Seq ExpressionPI0003520
SyntenyPI0003520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATATCGCAAGTCAATGCCGCAGGAGGGTCTGTGCACGCGGCAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGTCCACTTAACACCGAAACAGTCGCGTTCGTAAGGAATGACCCCTTCTCCAGTACTTACAACCCTGGTTGGAGGAACCATCCTAATTTTGGATGGGGAGGATCGGGTCAACAAAATCAAGGGTGA

mRNA sequence

ATGGCAATATCGCAAGTCAATGCCGCAGGAGGGTCTGTGCACGCGGCAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGTCCACTTAACACCGAAACAGTCGCGTTCGTAAGGAATGACCCCTTCTCCAGTACTTACAACCCTGGTTGGAGGAACCATCCTAATTTTGGATGGGGAGGATCGGGTCAACAAAATCAAGGGTGA

Coding sequence (CDS)

ATGGCAATATCGCAAGTCAATGCCGCAGGAGGGTCTGTGCACGCGGCAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGTCCACTTAACACCGAAACAGTCGCGTTCGTAAGGAATGACCCCTTCTCCAGTACTTACAACCCTGGTTGGAGGAACCATCCTAATTTTGGATGGGGAGGATCGGGTCAACAAAATCAAGGGTGA

Protein sequence

MAISQVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWRNHPNFGWGGSGQQNQG
Homology
BLAST of PI0003520 vs. ExPASy TrEMBL
Match: A0A5A7UTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76994G00070 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1  MAISQVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWR 60
          M ++QVN    SVH    + +M CVGC G +NTD CP NT+ + + +NDP+S+TYN GWR
Sbjct: 18 MVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMITYAKNDPYSNTYNGGWR 77

Query: 61 NHPNFGWGGSGQQNQG 77
          NH NF WGG+GQ NQG
Sbjct: 78 NHSNFSWGGTGQDNQG 93

BLAST of PI0003520 vs. ExPASy TrEMBL
Match: A0A5A7VE68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00330 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MAISQVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWR 60
          M + +VN A   VH   Q+ ++GCVGCGGPHNTD CP NTETVA+V+NDP+ +TYN GWR
Sbjct: 18 MTLVKVNDAKSFVHVVQQVVELGCVGCGGPHNTDTCPQNTETVAYVKNDPYLNTYNAGWR 77

Query: 61 NHPNFGWGGSGQQNQG 77
          NH NF WG   +  +G
Sbjct: 78 NHLNFSWGVKSKTLKG 93

BLAST of PI0003520 vs. ExPASy TrEMBL
Match: A0A5D3BYZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold758G00120 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-16
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 22 MGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWRNHPNFGWGGSGQQNQG 77
          MGCVG G PHNT+ CPLNTE VA+V+NDP+S+TYN GWR HPNF WGG    NQG
Sbjct: 1  MGCVGYGDPHNTNVCPLNTEIVAYVKNDPYSNTYNSGWRYHPNFSWGGQSHNNQG 55

BLAST of PI0003520 vs. ExPASy TrEMBL
Match: A0A5D3CSC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00360 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1   MAISQVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWR 60
           M   QVNAA  S  +  Q+D++GC+  G PH  DACPLN E VA+V++DP+S+TYNP WR
Sbjct: 85  MVFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAYVKHDPYSNTYNPRWR 144

Query: 61  NHPNF 66
           NHPNF
Sbjct: 145 NHPNF 149

BLAST of PI0003520 vs. ExPASy TrEMBL
Match: A0A5D3CGY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00460 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.5e-15
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 5  QVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWRNHPN 64
          QVNAAG  VHA  Q+ ++GCVGC GPHNT+ACP N E  A V+    S+TYN GWRNHPN
Sbjct: 4  QVNAAGSPVHAIQQVAELGCVGCEGPHNTNACPRNIEIFAHVK-ITHSNTYNDGWRNHPN 63

Query: 65 FGWG 69
          F WG
Sbjct: 64 FSWG 66

BLAST of PI0003520 vs. NCBI nr
Match: KAA0058408.1 (uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK04705.1 uncharacterized protein E5676_scaffold76994G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 4.5e-19
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1  MAISQVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWR 60
          M ++QVN    SVH    + +M CVGC G +NTD CP NT+ + + +NDP+S+TYN GWR
Sbjct: 18 MVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMITYAKNDPYSNTYNGGWR 77

Query: 61 NHPNFGWGGSGQQNQG 77
          NH NF WGG+GQ NQG
Sbjct: 78 NHSNFSWGGTGQDNQG 93

BLAST of PI0003520 vs. NCBI nr
Match: KAA0066652.1 (uncharacterized protein E6C27_scaffold979G00840 [Cucumis melo var. makuwa] >TYK04095.1 uncharacterized protein E5676_scaffold2119G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-18
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MAISQVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWR 60
          M + +VN A   VH   Q+ ++GCVGCGGPHNTD CP NTETVA+V+NDP+ +TYN GWR
Sbjct: 18 MTLVKVNDAKSFVHVVQQVVELGCVGCGGPHNTDTCPQNTETVAYVKNDPYLNTYNAGWR 77

Query: 61 NHPNFGWGGSGQQNQG 77
          NH NF WG   +  +G
Sbjct: 78 NHLNFSWGVKSKTLKG 93

BLAST of PI0003520 vs. NCBI nr
Match: TYK04238.1 (hypothetical protein E5676_scaffold758G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 7.9e-16
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 22 MGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWRNHPNFGWGGSGQQNQG 77
          MGCVG G PHNT+ CPLNTE VA+V+NDP+S+TYN GWR HPNF WGG    NQG
Sbjct: 1  MGCVGYGDPHNTNVCPLNTEIVAYVKNDPYSNTYNSGWRYHPNFSWGGQSHNNQG 55

BLAST of PI0003520 vs. NCBI nr
Match: KAA0038192.1 (hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK14793.1 hypothetical protein E5676_scaffold1610G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.7e-15
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1   MAISQVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWR 60
           M   QVNAA  S  +  Q+D++GC+  G PH  DACPLN E VA+V++DP+S+TYNP WR
Sbjct: 85  MVFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAYVKHDPYSNTYNPRWR 144

Query: 61  NHPNF 66
           NHPNF
Sbjct: 145 NHPNF 149

BLAST of PI0003520 vs. NCBI nr
Match: TYK11061.1 (hypothetical protein E5676_scaffold73G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 5  QVNAAGGSVHAANQIDDMGCVGCGGPHNTDACPLNTETVAFVRNDPFSSTYNPGWRNHPN 64
          QVNAAG  VHA  Q+ ++GCVGC GPHNT+ACP N E  A V+    S+TYN GWRNHPN
Sbjct: 4  QVNAAGSPVHAIQQVAELGCVGCEGPHNTNACPRNIEIFAHVK-ITHSNTYNDGWRNHPN 63

Query: 65 FGWG 69
          F WG
Sbjct: 64 FSWG 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UTC12.2e-1955.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE682.4e-1857.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BYZ53.8e-1670.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CSC73.3e-1558.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGY45.5e-1564.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0058408.14.5e-1955.26uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK... [more]
KAA0066652.15.0e-1857.89uncharacterized protein E6C27_scaffold979G00840 [Cucumis melo var. makuwa] >TYK0... [more]
TYK04238.17.9e-1670.91hypothetical protein E5676_scaffold758G00120 [Cucumis melo var. makuwa][more]
KAA0038192.16.7e-1558.46hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK1479... [more]
TYK11061.11.1e-1464.06hypothetical protein E5676_scaffold73G00460 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003520.1PI0003520.1mRNA