PI0003497 (gene) Melon (PI 482460) v1

Overview
NamePI0003497
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Locationchr08: 22830563 .. 22833799 (-)
RNA-Seq ExpressionPI0003497
SyntenyPI0003497
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATAATTGATTGAACCCTTAAATTTATACAATTTTATAATTTGTACAATTATGCCAACCTGAGGGTCTAATTTTTGGACTAGCTCATAATTGCAATGCAACTACAACAATATTTTCTGAGAACTGAGCGCCCTTGATTTCCCGCCCAAGTCTATATAACACCTTCAAACTCCATTCACGTTAAAACCACCTACCATCTCTCCGCCTGCATCCTCTTCCATCGGAACTCGTTGCCCCATCTGGGTCGGGGGCAAGCATGTCATTCAGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCCGTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAGCCATACAGTGAGGTGTTTGGTTTGCTGAGGTTTTGGGTGTGTGAGCTGATCCATGGAAGGTGGGGATGGGGTATGTTGGCTACACTTGGTGCCCTCACTGTTGAGTGCTCACTGGTATCACTTGGCAGTTATCAAGTTTCAACGACTCTAATGGTTAAAACCGGCTATCTTATTTTTCAAAAACCACCAAAAATCAAAAATAGCTTAATTATTTCAAACCGTTTTTAACAGTACGTTATTAGAGGCGAAAAGTTAAACATTAAACGGCCCCTAAACTTTAAAATGTGTTTTAAAGTGAGTTAATGCGATGAAGGTTTTTTATATTTGGTGGATATTGAAATTGCAAAAATATTTCGGTAAAAAGTGTAAGTGAGGTTTAAACATTGGTCTAGAAGGAATTTAGGAGATAGTTTTACTACTAAATTAGTTATTGATAATGATATTATTTTAATTATATATAAAGAGCATGAAGTTGAGAGGAGACTTGAGGTTCGAGTAATTAAAAATAGTAATTAAAAAATAATTAAAAATAGTAACTAAAAAGTAATTAAAAATAGTAATTAAAAAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAAATAATTAAAAATAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAATAGTTAATTGTATGTGAATTTTTGTTTCTGAAGTTTGAGAGGAGACTTGAGTTTTGAGTAATTAAAAAGTAATTAAAAAGTAATTAAAAAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAATAGTAACTAAAAAGTAATTAAAAAGTAATTAAAAATAGTTAATTGTATGTGAATTTTTGTTTCTTTTAAGAACATGACAAATTATTTAACTTTGTTATTAGTATTGTTTCTTTTAAGAACATGACAAATTATTTAACTTTGTTATTAGTAGAGATGACCTCTGATATAGAAATTTCTCCAAACAACCTTTTAAGAAATTTTGAAAATATGGACACAATCTTGAAAAACAGTAAGCCAATGGTTATTTATTTGGGTTTGTGTACTGAATGTTTTTCATAAGTGGGGTTGGAGTAAGTTGATGATCCTTAATCACCTCAATCTCGAGAAAATATGGTGAACTAAAAATGCATTTTGTGGACTTAGACAAGAATTGCTAATTTTTCCAATTTTGTTCAATTTAATGACAAGTGAACTTACACAAAGTCACATTACAAAAAGTGGAGTGTCGAGAAGCAATCAACATATTAGTTTTCAATACCATAATCAAGATAAATTTTTTAGGGAAGAATATGAATTAAGCTCTCTCTATATATAATATTGTGTAGCAGGACTAAGTTTTAGGTTTCTTTGATTCCTTTACAAAAGAACCTTGGAAGGTTGTATAGAACTTGCACAAAGTGCTAGATAGGAGCCAAGGAAAGGGGAGGGGCAAGTTGGCTTTGACCTTAACCTCAAATGTAAGGCATGACAATTGGGTTAGATTATTCAAATTCTTGGTCCATTCTTCTAGGATATCTTTTTTGAACCTATTTTTGGCTCGTTTTAATTTCTTTGAGTTAGGACAACTTTTTCGATTTTACCTTTAAAATTGATTCTCTTCGAACTTTCTCATAGGTCTATAATTATAAAATCGGGTATAAAGTAGGATAAAAAAAAGTTAAAATGTAATTTTGATGATGATGGTGATAACGGTAATAATAATATTTTGGCTTAAATCTTACTTTTGTCACTAAACTTTACATCTTATTCTATTTTGGTCTCTAGATTTTTTAAAAAATCTGTTAGAGTTCGTGAACCTTTAAAAAGAGTTTACTTTGGTCCTTTGTCTTGGATGTTAACACTAACATACAAGTTTGTTTTATTTGATCTTTTATTCTACTCAATATTTTTATGTTTTGCTTCAAGATTTCAATTTTTCTAGAAAGAATAACAAAGAGTGTTGGAGTCGGGAGGGGATGTGAGGAGAAGAGAGTAAAATTAGTTATTTGATTTATTTGATTCAAGTGTTATTAGGTTTTTATGTTGACATAAAATATTTATAAATTTATCAATTTAATTAATATACTAAATCCAGAGTCTTATCTACTCATCGTTAAGTTAATTAATACATAGTGAGTTATTATAATCTGATTAAAATAATTTATGTTTGGAGTGTAAATCATTTTAGTTTGGATTATAATAGTATGTGTTTGATGTATAGACTATTTTAGTTTGATAAGTAATAGTAAGCGTCGTAACAAAAAAAAATAAAAACATTACAGGAAGAAGTGATTATGATAGTCATTGTTAACTTTTGCCCCAAACAAGAGTATTTAAACCTACTCATTTCCAATAAGATTTCAATTTCCATTATTTTTATTGGCTTGTGCTTGTTCGCGCCTTCGTTACTGCGTTAGGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAACGCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGGTAAATTCGACTGTGAAGTTTTTGTCAAATTTCTTCTGATTAGAGTTCGATCTGTATGATATTTGCTTTGATTCTGTTCTGGAAGATAAAAAATCCGAAATGTCAATTGAAAATTTTATATTTGCCAACTTCGAGTTTATTTCATTATAGATTTTTCGATGATGCAGTTCCTGA

mRNA sequence

ATGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCCGTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAGCCATACAGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAACGCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGTTCCTGA

Coding sequence (CDS)

ATGCCCACCAAAGAAAGCGTTCATAAAGTTGACTGTGGACCGGCAGCTGTGGTACCCATAGCCGTGGCGGGCTGGACAGGAGCTTGGTGGGGGAATTATGGGTTTGACCCGTTTGGGGTGGGGAAACCAGTGGAGTACTTGGACCAGAACTTGGTTAAGAATATGGGTGGCGATGTGTTTGGATCTCGTATTCTTGAATGTGAAGTCGACACCGTACCAGCCATACAGGTTTGGCACCAAGTTTGTGGAGTGGTGATCTCCAGCGGATTTGCCCAACAATCTCTCCTCTTCAATTCCGCCATTGTCATAACAGTCTTCAATTGTTCCAACGCCGTTAAGGAAGAATTCCTTAGGTTGGCTCCTCACCGGAAACTTGCGGTTCCTCTTTGTTGCGTACTATCAAATTCTAGTTCCTGA

Protein sequence

MPTKESVHKVDCGPAAVVPIAVAGWTGAWWGNYGFDPFGVGKPVEYLDQNLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGVVISSGFAQQSLLFNSAIVITVFNCSNAVKEEFLRLAPHRKLAVPLCCVLSNSSS
Homology
[Close]
BLAST of PI0003497 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 0 

Query: 14  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRIL 73
           P A+ P     W  G+  G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R  
Sbjct: 60  PGAISP----DWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTE 119

Query: 74  ECEVDTVPAIQVWHQVCGV 85
             +  + P  Q + +V G+
Sbjct: 120 AADAKSTP-FQPYSEVFGI 133

[Close]
BLAST of PI0003497 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-07
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + 
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP-FQPYS 126

[Close]
BLAST of PI0003497 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-06
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + 
Sbjct: 71  GSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP-FQPYT 130

[Close]
BLAST of PI0003497 vs. ExPASy TrEMBL
Match: G3FNQ6 (Chlorophyll a-b binding protein, chloroplastic OS=Dimocarpus longan OX=128017 GN=LCAB3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-08
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQ 62
           TK++  K    P+A  P+   G        G+  G+YGFDPFG+GKPVEY       LDQ
Sbjct: 37  TKKAAPKKFSKPSADRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KNM GD+ G+R+   EV + P  Q + +V G+
Sbjct: 97  NLAKNMAGDIIGTRVESSEVKSTP-FQPYTEVFGL 130

[Close]
BLAST of PI0003497 vs. ExPASy TrEMBL
Match: A0A067JKE4 (Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas OX=180498 GN=JCGZ_25025 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P++  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKKSSKPSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNLAGDVIGTRTELADVKSTP-FQPYSEVFGL 129

[Close]
BLAST of PI0003497 vs. ExPASy TrEMBL
Match: B9SQ36 (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RCOM_0644360 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKRSAKPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GD+ G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNIAGDIIGTRTEAADVKSTP-FQPYSEVFGL 129

[Close]
BLAST of PI0003497 vs. ExPASy TrEMBL
Match: A0A6P4AP94 (Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107430831 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 4   KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQN 63
           K+S  K    P++  P+   G T   W      G+YGFDPFG+GKP EY       LDQN
Sbjct: 37  KKSKPKKSIKPSSDRPLWYPGATAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQN 96

Query: 64  LVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           L KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 97  LAKNLAGDVIGTRSEASDVKSTP-FQPYSEVFGL 129

[Close]
BLAST of PI0003497 vs. ExPASy TrEMBL
Match: A0A4S8IDL3 (Chlorophyll a-b binding protein, chloroplastic OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t02650 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S+ K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 37  TKKSLRKKVKAPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN  GDV G+R    +V + P  Q + +V G+
Sbjct: 97  NLAKNSAGDVIGTRTESADVKSTP-FQPYSEVFGL 130

[Close]
BLAST of PI0003497 vs. NCBI nr
Match: AEO51756.1 (chloroplast chlorophyll A/B binding protein [Dimocarpus longan])

HSP 1 Score: 67.8 bits (164), Expect = 8.5e-08
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAG------WTGAWWGNYGFDPFGVGKPVEY-------LDQ 62
           TK++  K    P+A  P+   G        G+  G+YGFDPFG+GKPVEY       LDQ
Sbjct: 37  TKKAAPKKFSKPSADRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KNM GD+ G+R+   EV + P  Q + +V G+
Sbjct: 97  NLAKNMAGDIIGTRVESSEVKSTP-FQPYTEVFGL 130

[Close]
BLAST of PI0003497 vs. NCBI nr
Match: XP_012087873.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Jatropha curcas] >KDP24461.1 hypothetical protein JCGZ_25025 [Jatropha curcas])

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-07
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P++  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKKSSKPSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNLAGDVIGTRTELADVKSTP-FQPYSEVFGL 129

[Close]
BLAST of PI0003497 vs. NCBI nr
Match: XP_002528105.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Ricinus communis] >EEF34284.1 chlorophyll A/B binding protein, putative [Ricinus communis])

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-07
Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S  K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 36  TKKSAPKRSAKPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQ 95

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN+ GD+ G+R    +V + P  Q + +V G+
Sbjct: 96  NLAKNIAGDIIGTRTEAADVKSTP-FQPYSEVFGL 129

[Close]
BLAST of PI0003497 vs. NCBI nr
Match: THU46220.1 (hypothetical protein C4D60_Mb09t02650 [Musa balbisiana])

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-07
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 3   TKESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQ 62
           TK+S+ K    P +  P+   G     W      G+YGFDPFG+GKP EY       LDQ
Sbjct: 37  TKKSLRKKVKAPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQ 96

Query: 63  NLVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           NL KN  GDV G+R    +V + P  Q + +V G+
Sbjct: 97  NLAKNSAGDVIGTRTESADVKSTP-FQPYSEVFGL 130

[Close]
BLAST of PI0003497 vs. NCBI nr
Match: XP_015897179.1 (chlorophyll a-b binding protein CP29.2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-07
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 4   KESVHKVDCGPAAVVPIAVAGWTGAWW------GNYGFDPFGVGKPVEY-------LDQN 63
           K+S  K    P++  P+   G T   W      G+YGFDPFG+GKP EY       LDQN
Sbjct: 37  KKSKPKKSIKPSSDRPLWYPGATAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQN 96

Query: 64  LVKNMGGDVFGSRILECEVDTVPAIQVWHQVCGV 85
           L KN+ GDV G+R    +V + P  Q + +V G+
Sbjct: 97  LAKNLAGDVIGTRSEASDVKSTP-FQPYSEVFGL 129

[Close]
BLAST of PI0003497 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 0 

Query: 14  PAAVVPIAVAGW-TGAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRIL 73
           P A+ P     W  G+  G+YGFDPFG+GKP EY       LDQNL KN+ GDV G+R  
Sbjct: 60  PGAISP----DWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTE 119

Query: 74  ECEVDTVPAIQVWHQVCGV 85
             +  + P  Q + +V G+
Sbjct: 120 AADAKSTP-FQPYSEVFGI 133

[Close]
BLAST of PI0003497 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + 
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP-FQPYS 126

[Close]
BLAST of PI0003497 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+YGFDPFG+GKP EY       LDQNL KN+ G+V G+R    +  + P  Q + 
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTP-FQPYS 126

[Close]
BLAST of PI0003497 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + 
Sbjct: 71  GSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP-FQPYT 130

[Close]
BLAST of PI0003497 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 27  GAWWGNYGFDPFGVGKPVEY-------LDQNLVKNMGGDVFGSRILECEVDTVPAIQVWH 85
           G+  G+ GFDPFG+GKP EY       LDQNL KN+ GD+ G      E+   P  Q + 
Sbjct: 71  GSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP-FQPYT 130

The following BLAST results are available for this feature:
BLAST of PI0003497 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q074731.8e-0843.04Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX... [more]
Q9XF884.4e-0744.62Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX... [more]
Q9S7W13.7e-0643.08Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX... [more]
BLAST of PI0003497 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
G3FNQ64.1e-0842.11Chlorophyll a-b binding protein, chloroplastic OS=Dimocarpus longan OX=128017 GN... [more]
A0A067JKE42.7e-0740.00Chlorophyll a-b binding protein, chloroplastic OS=Jatropha curcas OX=180498 GN=J... [more]
B9SQ363.5e-0738.95Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RC... [more]
A0A6P4AP943.5e-0740.43Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba OX=326968 GN=L... [more]
A0A4S8IDL33.5e-0740.00Chlorophyll a-b binding protein, chloroplastic OS=Musa balbisiana OX=52838 GN=C4... [more]
BLAST of PI0003497 vs. NCBI nr
Match NameE-valueIdentityDescription
AEO51756.18.5e-0842.11chloroplast chlorophyll A/B binding protein [Dimocarpus longan][more]
XP_012087873.15.5e-0740.00chlorophyll a-b binding protein CP29.1, chloroplastic [Jatropha curcas] >KDP2446... [more]
XP_002528105.17.2e-0738.95chlorophyll a-b binding protein CP29.1, chloroplastic [Ricinus communis] >EEF342... [more]
THU46220.17.2e-0740.00hypothetical protein C4D60_Mb09t02650 [Musa balbisiana][more]
XP_015897179.17.2e-0740.43chlorophyll a-b binding protein CP29.2, chloroplastic [Ziziphus jujuba][more]
BLAST of PI0003497 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G01530.11.3e-0943.04light harvesting complex photosystem II [more]
AT3G08940.13.1e-0844.62light harvesting complex photosystem II [more]
AT3G08940.23.1e-0844.62light harvesting complex photosystem II [more]
AT2G40100.12.6e-0743.08light harvesting complex photosystem II [more]
AT2G40100.22.6e-0743.08light harvesting complex photosystem II [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003497.1PI0003497.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0016020 membrane
cellular_component GO:0009579 thylakoid