Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTCTGTCCAGAGTATGAATCTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGATGCCACCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTCTATGCACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGTCACCTTCTGCAAATATTGTAAACTCTAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGGAAATCTGTCCAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTCATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAAGCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCTTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGCAACCATATGACCTCTGACATTTCATTATTGTCCTCTCCTACCCCTGTCCAATCCCTTCCACCAATCCACTCTGGTGATGGTAATCAAATGGCTATTTCTCACATTGGAACTGTTCACACACCCACCATCAACCTTTCCCACACTTATCATGTTCCAAATCTAACATTCAACCTAGCCTCTGTTGGCCAATTATGTGACCTTGGACTTAACATTATCTTTTCCTCTAATGGTTGTCAGGTTTAG
mRNA sequence
ATGGGACTCTGTCCAGAGTATGAATCTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGATGCCACCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTCTATGCACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGGAAATCTGTCCAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTCATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAAGCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCTTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGCAACCATATGACCTCTGACATTTCATTATTGTCCTCTCCTACCCCTGTCCAATCCCTTCCACCAATCCACTCTGGTGATGGTAATCAAATGGCTATTTCTCACATTGGAACTGTTCACACACCCACCATCAACCTTTCCCACACTTATCATGTTCCAAATCTAACATTCAACCTAGCCTCTGTTGGCCAATTATGTGACCTTGGACTTAACATTATCTTTTCCTCTAATGGTTGTCAGGTTTAG
Coding sequence (CDS)
ATGGGACTCTGTCCAGAGTATGAATCTGTTCGGGCTGCCCTCTTACACCGCAACCCTCTACCATCTCTTGATGCCACCGTTCAGGAAATCCTATTTGAGGAGAAAAGACTTGGCATTAGCTCCTCTATGCACTCTGATACTGCCCTTGCAACCACTCATTCACGGCCTACTAATGAGGGACACAAGATTGCTAATTGTCCTATCATTAAGTGCAGGTACTGTCACAAGCAAGGTCACATCTTGGAAATCTGTCCAACTCGTCCACCGTGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACCTAATTCGGGTTCCTCATCTGTGGTTGCTGCTGCCACCTCACCTGACACTACACCATCTCCAAGCTTTCAGTTACATGACCTCCATGACTTACTGAAACAGGTGATCTCTTCCAACTCTACTGCCTTTGCTGCCACATCAGGTACTTCCTGGCTCCTTGATTCCGCCTGTTGCAACCATATGACCTCTGACATTTCATTATTGTCCTCTCCTACCCCTGTCCAATCCCTTCCACCAATCCACTCTGGTGATGGTAATCAAATGGCTATTTCTCACATTGGAACTGTTCACACACCCACCATCAACCTTTCCCACACTTATCATGTTCCAAATCTAACATTCAACCTAGCCTCTGTTGGCCAATTATGTGACCTTGGACTTAACATTATCTTTTCCTCTAATGGTTGTCAGGTTTAG
Protein sequence
MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNEGHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVVAAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLSSPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNIIFSSNGCQV
Homology
BLAST of PI0003464 vs. ExPASy TrEMBL
Match:
A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)
HSP 1 Score: 383.6 bits (984), Expect = 5.8e-103
Identity = 200/249 (80.32%), Postives = 209/249 (83.94%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYESVRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 165 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCHK+GHIL+ CPTRPP PPGHSHKPK S +GSSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 285 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 344
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 345 SHIPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 404
BLAST of PI0003464 vs. ExPASy TrEMBL
Match:
A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)
HSP 1 Score: 383.6 bits (984), Expect = 5.8e-103
Identity = 200/249 (80.32%), Postives = 209/249 (83.94%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYESVRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 133 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 192
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCHK+GHIL+ CPTRPP PPGHSHKPK S +GSSSVV
Sbjct: 193 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 252
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 253 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 312
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 313 SHIPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 372
BLAST of PI0003464 vs. ExPASy TrEMBL
Match:
A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)
HSP 1 Score: 381.7 bits (979), Expect = 2.2e-102
Identity = 199/249 (79.92%), Postives = 208/249 (83.53%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYE VRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 165 MGLRPEYEPVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCHK+GHIL+ CPTRPP PPGHSHKPK S +GSSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 285 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 344
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 345 SHIPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 404
BLAST of PI0003464 vs. ExPASy TrEMBL
Match:
A0A5A7UVX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006520 PE=4 SV=1)
HSP 1 Score: 377.1 bits (967), Expect = 5.5e-101
Identity = 197/249 (79.12%), Postives = 207/249 (83.13%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYE VRAALLHRN LPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 165 MGLRPEYEFVRAALLHRNSLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+C+YCHK+GHIL+ CPTRPP PPGHSHKPK +GSSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECKYCHKRGHILDNCPTRPPRPPGHSHKPKFFHKAGSSSVV 284
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 285 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 344
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S TPVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 345 SHTPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 404
BLAST of PI0003464 vs. ExPASy TrEMBL
Match:
A0A5A7U9K0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001590 PE=4 SV=1)
HSP 1 Score: 367.1 bits (941), Expect = 5.7e-98
Identity = 190/249 (76.31%), Postives = 202/249 (81.12%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYE VRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATT+ R NE
Sbjct: 1 MGLRPEYEFVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTYLRQANET 60
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCH++GHIL+ CPT PP PPGHSHKPK S SSSVV
Sbjct: 61 IFCKNCKLHGHKFANCPTIECRYCHRRGHILDNCPTIPPRPPGHSHKPKFSHKVDSSSVV 120
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AATS D T S QL DLHDLLKQ+ISS STA A TSGTSWLLDS CCNHMTSDISL S
Sbjct: 121 VAATSSDITEPSSLQLTDLHDLLKQMISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSS 180
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGT++TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 181 SHIPVQSLPPIHSADGNFMSISHIGTINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 240
BLAST of PI0003464 vs. NCBI nr
Match:
KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 383.6 bits (984), Expect = 1.2e-102
Identity = 200/249 (80.32%), Postives = 209/249 (83.94%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYESVRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 165 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCHK+GHIL+ CPTRPP PPGHSHKPK S +GSSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 285 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 344
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 345 SHIPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 404
BLAST of PI0003464 vs. NCBI nr
Match:
KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 383.6 bits (984), Expect = 1.2e-102
Identity = 200/249 (80.32%), Postives = 209/249 (83.94%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYESVRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 133 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 192
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCHK+GHIL+ CPTRPP PPGHSHKPK S +GSSSVV
Sbjct: 193 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 252
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 253 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 312
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 313 SHIPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 372
BLAST of PI0003464 vs. NCBI nr
Match:
KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 381.7 bits (979), Expect = 4.6e-102
Identity = 199/249 (79.92%), Postives = 208/249 (83.53%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYE VRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 165 MGLRPEYEPVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCHK+GHIL+ CPTRPP PPGHSHKPK S +GSSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 285 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 344
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 345 SHIPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 404
BLAST of PI0003464 vs. NCBI nr
Match:
KAA0058316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 377.1 bits (967), Expect = 1.1e-100
Identity = 197/249 (79.12%), Postives = 207/249 (83.13%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYE VRAALLHRN LPSLDA VQEILFEEKRLGI SS+HSD ALATTH R NE
Sbjct: 165 MGLRPEYEFVRAALLHRNSLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+C+YCHK+GHIL+ CPTRPP PPGHSHKPK +GSSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECKYCHKRGHILDNCPTRPPRPPGHSHKPKFFHKAGSSSVV 284
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AAATS T PS S QL DLHDLLKQVISS STA A T GTSWLLDSACCNHMTSDISLLS
Sbjct: 285 AAATSDITEPS-SLQLTDLHDLLKQVISSQSTALAVTPGTSWLLDSACCNHMTSDISLLS 344
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S TPVQSLPPIHS DGN M+ISHIGTV+TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 345 SHTPVQSLPPIHSADGNSMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 404
BLAST of PI0003464 vs. NCBI nr
Match:
KAA0052024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04536.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 367.1 bits (941), Expect = 1.2e-97
Identity = 190/249 (76.31%), Postives = 202/249 (81.12%), Query Frame = 0
Query: 1 MGLCPEYESVRAALLHRNPLPSLDATVQEILFEEKRLGISSSMHSDTALATTHSRPTNE- 60
MGL PEYE VRAALLHRNPLPSLDA VQEILFEEKRLGI SS+HSD ALATT+ R NE
Sbjct: 1 MGLRPEYEFVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTYLRQANET 60
Query: 61 ---------GHKIANCPIIKCRYCHKQGHILEICPTRPPCPPGHSHKPKSSPNSGSSSVV 120
GHK ANCP I+CRYCH++GHIL+ CPT PP PPGHSHKPK S SSSVV
Sbjct: 61 IFCKNCKLHGHKFANCPTIECRYCHRRGHILDNCPTIPPRPPGHSHKPKFSHKVDSSSVV 120
Query: 121 AAATSPDTTPSPSFQLHDLHDLLKQVISSNSTAFAATSGTSWLLDSACCNHMTSDISLLS 180
AATS D T S QL DLHDLLKQ+ISS STA A TSGTSWLLDS CCNHMTSDISL S
Sbjct: 121 VAATSSDITEPSSLQLTDLHDLLKQMISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSS 180
Query: 181 SPTPVQSLPPIHSGDGNQMAISHIGTVHTPTINLSHTYHVPNLTFNLASVGQLCDLGLNI 240
S PVQSLPPIHS DGN M+ISHIGT++TPTI LS+TYHVPNLTFNLASVGQLCDLGL I
Sbjct: 181 SHIPVQSLPPIHSADGNFMSISHIGTINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTI 240
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DG18 | 5.8e-103 | 80.32 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7VDW0 | 5.8e-103 | 80.32 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7SZ66 | 2.2e-102 | 79.92 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7UVX4 | 5.5e-101 | 79.12 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7U9K0 | 5.7e-98 | 76.31 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |
KAA0043149.1 | 1.2e-102 | 80.32 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0065380.1 | 1.2e-102 | 80.32 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0036574.1 | 4.6e-102 | 79.92 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0058316.1 | 1.1e-100 | 79.12 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0052024.1 | 1.2e-97 | 76.31 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |