PI0003284 (gene) Melon (PI 482460) v1

Overview
NamePI0003284
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRibulose bisphosphate carboxylase small subunit
Locationchr10: 20430157 .. 20431348 (+)
RNA-Seq ExpressionPI0003284
SyntenyPI0003284
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATTTACAACCACTAAATTGGTTTGTGAATGGATAAAATGAGCATAGTAAAGAGCTTATAAATACACTACCATTTCACAGTGCAATGCCTCTCAGACTCAACAGCAAGAGCTTCTTCAAAGTACTCTACTAGCTATTAGTAAATCCTTCTAACCCTCCAAAAAAAAGAGGCATCAAATGGCTTCGTCCATTCTCTCATCCGCCGGTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCCGCCGCTGCTTTCCCCATCACTCGCAAGAACAACGACATCACCACTTTGGCTAGCAATGGTGGAAGAGTTCAGTGCATGAAGGTATCAAATTCAATTTCTTTATTAATTAATTATATATTAGTTTGATTTAATGATTAATTAATCTTTTTTTTTAAAAAAAAAAAAAATTAAGGTATGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTTTCTTACCTGCCTGACATGAACAACGAACAATTGGCAAAGGAATGTGACTACCTTCTCAGGAACGGATGGATTCCCTGCATTGAATTCGATATTCACGTATGGTTTTCTTATTTAATTTAATAGGATTGAATAATTAAATTAGTTAGTGTTTGCATGATTAATTAGTGTTTTTTTTTGTTTAATTTTGGCAGAGCGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGATACTGGACCATGTGGAAGCTGCCTATGTTTGGCTGCACCGATTCATCTCAGGTGGTTGCCGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATACATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTTCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTCTTAAATTCCATCTGCTGCGGCTTTCTTGAGGCGAATTTCCACCATTTGCCTTCTTTAAAGCTCCATCACTTGGGTGGTTTCAACCAAATTTCCCTCCTTTAATTTTTTTTTTACTCTTTTTTCTTATTTTTCCATTTTACGTTTTGGTTTGTCTGTTCAATCCCACTATGTTTATTTCCCCGACTTTCCAATTCGAATTGGAATAAATGATGCTTTGATTTGTTCTTGAATTATCCCATCAATCAATCGATCGTATTTGCATCTTTCCTTATAG

mRNA sequence

TAAATTTACAACCACTAAATTGGTTTGTGAATGGATAAAATGAGCATAGTAAAGAGCTTATAAATACACTACCATTTCACAGTGCAATGCCTCTCAGACTCAACAGCAAGAGCTTCTTCAAAGTACTCTACTAGCTATTAGTAAATCCTTCTAACCCTCCAAAAAAAAGAGGCATCAAATGGCTTCGTCCATTCTCTCATCCGCCGGTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCCGCCGCTGCTTTCCCCATCACTCGCAAGAACAACGACATCACCACTTTGGCTAGCAATGGTGGAAGAGTTCAGTGCATGAAGGTATGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTTTCTTACCTGCCTGACATGAACAACGAACAATTGGCAAAGGAATGTGACTACCTTCTCAGGAACGGATGGATTCCCTGCATTGAATTCGATATTCACAGCGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGATACTGGACCATGTGGAAGCTGCCTATGTTTGGCTGCACCGATTCATCTCAGGTGGTTGCCGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATACATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTTCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTCTTAAATTCCATCTGCTGCGGCTTTCTTGAGGCGAATTTCCACCATTTGCCTTCTTTAAAGCTCCATCACTTGGGTGGTTTCAACCAAATTTCCCTCCTTTAATTTTTTTTTTACTCTTTTTTCTTATTTTTCCATTTTACGTTTTGGTTTGTCTGTTCAATCCCACTATGTTTATTTCCCCGACTTTCCAATTCGAATTGGAATAAATGATGCTTTGATTTGTTCTTGAATTATCCCATCAATCAATCGATCGTATTTGCATCTTTCCTTATAG

Coding sequence (CDS)

ATGGCTTCGTCCATTCTCTCATCCGCCGGTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCCGCCGCTGCTTTCCCCATCACTCGCAAGAACAACGACATCACCACTTTGGCTAGCAATGGTGGAAGAGTTCAGTGCATGAAGGTATGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTTTCTTACCTGCCTGACATGAACAACGAACAATTGGCAAAGGAATGTGACTACCTTCTCAGGAACGGATGGATTCCCTGCATTGAATTCGATATTCACAGCGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGATACTGGACCATGTGGAAGCTGCCTATGTTTGGCTGCACCGATTCATCTCAGGTGGTTGCCGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATACATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTTCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTCTTAA

Protein sequence

MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMKVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPRFYSSS
Homology
[Close]
BLAST of PI0003284 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.1e-93
Identity = 163/179 (91.06%), Postives = 173/179 (96.65%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN-DITTLASNGGRVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKS+A FPITRKNN DITTLASN G+VQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPDM+NEQL+KECDYLLRNGW+PC+EFDI SGFVYRENHRSPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKP 179
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

[Close]
BLAST of PI0003284 vs. ExPASy Swiss-Prot
Match: P24007 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifolia OX=3767 GN=RBCS PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.6e-81
Identity = 139/183 (75.96%), Postives = 165/183 (90.16%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNS--ASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQC 60
           MASS++SS  VA+V++   +PAQA MVAPF GLKS++AFP+TRK+NDIT++ASNGGRVQC
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQC 60

Query: 61  MKVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPG 120
           M+VWPPLGLKKFETLSYLP +++E LAKE DYLLR  W+PC+EF++ +GFVYRENHRSPG
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKP 180
           YYDGRYWTMWKLPMFGCTDSSQV+ E+EEAKK YP ++IR+IGFDNVRQVQCISFIAYKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 PRF 182
             F
Sbjct: 181 AGF 183

[Close]
BLAST of PI0003284 vs. ExPASy Swiss-Prot
Match: Q02980 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3751 GN=RBCS PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.8e-80
Identity = 139/183 (75.96%), Postives = 163/183 (89.07%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNS--ASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQC 60
           MASS++SS  VA+V++   +PAQA MVAPFTGLKS++A P+TRK+NDIT++ASNGGRVQC
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSNDITSIASNGGRVQC 60

Query: 61  MKVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPG 120
           M+VWPPLGLKKFETLSYLP ++ E LAKE DYLLR  W+PC+EF++  GFVYRENHRSPG
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKP 180
           YYDGRYWTMWKLPMFGCTDSSQV+ E+EEAKK YP ++IR+IGFDNVRQVQCISFIAYKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 PRF 182
             F
Sbjct: 181 AGF 183

[Close]
BLAST of PI0003284 vs. ExPASy Swiss-Prot
Match: P32764 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tuberosum OX=4113 GN=RBCS6 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.7e-79
Identity = 136/180 (75.56%), Postives = 165/180 (91.67%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN--DITTLASNGGRVQC 60
           MASSI+SSA VA+   ++ AQASMVAPFTGLKSAA+FP+T+KNN  DIT+LASNGGRV+C
Sbjct: 1   MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRC 60

Query: 61  MKVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPG 120
           M+VWPP+ +KK+ETLSYLPD+++EQL KE +YLL+NGW+PC+EF+   GFVYRENH+SPG
Sbjct: 61  MQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKP 179
           YYDGRYWTMWKLPMFGCTD++QV+AE++EAKK YP A+IR+IGFDNVRQVQCISFIAYKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178

[Close]
BLAST of PI0003284 vs. ExPASy Swiss-Prot
Match: P16032 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 OS=Mesembryanthemum crystallinum OX=3544 GN=RBCS1 PE=2 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 9.8e-79
Identity = 137/181 (75.69%), Postives = 159/181 (87.85%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMK 60
           MASS++SSA VA+VN  +PAQASMVAPF GLKS AAFP+T+KNNDIT++A+NGGRVQCM+
Sbjct: 1   MASSMVSSAAVATVN-RTPAQASMVAPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQ 60

Query: 61  VWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGYY 120
           VWPPLG KKFETLSYLP ++ E L KE  YLL NGW+PC+EF+   GFVYRE+  +PGYY
Sbjct: 61  VWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180
           DGRYWTMWKLPMFGCTD SQVVAE+EEAKK YP+A+IR+IGFDNVRQVQCISFIAYKP  
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180

Query: 181 F 182
           +
Sbjct: 181 Y 180

[Close]
BLAST of PI0003284 vs. ExPASy TrEMBL
Match: A0A5D3CCQ3 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001010 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.7e-98
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMK 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKSAAAFP+TRKNNDITTLASNGGRVQCMK
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDM+NEQL KE DYLLR GWIPCIEFDIHSGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180
           DGRYWTMWKLPMFGCTDSSQVV EIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180

Query: 181 FYSS 185
           FY+S
Sbjct: 181 FYTS 184

[Close]
BLAST of PI0003284 vs. ExPASy TrEMBL
Match: A0A1S3BG44 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo OX=3656 GN=LOC103489286 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.7e-98
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMK 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKSAAAFP+TRKNNDITTLASNGGRVQCMK
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDM+NEQL KE DYLLR GWIPCIEFDIHSGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180
           DGRYWTMWKLPMFGCTDSSQVV EIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180

Query: 181 FYSS 185
           FY+S
Sbjct: 181 FYTS 184

[Close]
BLAST of PI0003284 vs. ExPASy TrEMBL
Match: A0A0A0KR46 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=rbcS PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 171/185 (92.43%), Postives = 180/185 (97.30%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN-DITTLASNGGRVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKS+A FPITRKNN DITTLASNGG+VQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPDM+NEQL+KECDYLLRNGW+PC+EFDI SGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 185
           RFYSS
Sbjct: 181 RFYSS 185

[Close]
BLAST of PI0003284 vs. ExPASy TrEMBL
Match: A0A5P8U3Q4 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 GN=rbcS PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 171/185 (92.43%), Postives = 180/185 (97.30%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN-DITTLASNGGRVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKS+A FPITRKNN DITTLASNGG+VQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPDM+NEQL+KECDYLLRNGW+PC+EFDI SGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 185
           RFYSS
Sbjct: 181 RFYSS 185

[Close]
BLAST of PI0003284 vs. ExPASy TrEMBL
Match: H8WR56 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=ruBisCO PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 171/185 (92.43%), Postives = 180/185 (97.30%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN-DITTLASNGGRVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKS+A FPITRKNN DITTLASNGG+VQCM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPDM+NEQL+KECDYLLRNGW+PC+EFDI SGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 185
           RFYSS
Sbjct: 181 RFYSS 185

[Close]
BLAST of PI0003284 vs. NCBI nr
Match: WP_082918361.1 (ribulose-1,5-bisphosphate carboxylase small subunit [Pseudoalteromonas sp. MQS005] >XP_008446602.1 PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis melo] >KAA0034557.1 ribulose bisphosphate carboxylase small chain [Cucumis melo var. makuwa] >TYK09110.1 ribulose bisphosphate carboxylase small chain [Cucumis melo var. makuwa])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMK 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKSAAAFP+TRKNNDITTLASNGGRVQCMK
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMK 60

Query: 61  VWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDM+NEQL KE DYLLR GWIPCIEFDIHSGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180
           DGRYWTMWKLPMFGCTDSSQVV EIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR
Sbjct: 121 DGRYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPR 180

Query: 181 FYSS 185
           FY+S
Sbjct: 181 FYTS 184

[Close]
BLAST of PI0003284 vs. NCBI nr
Match: HAP2066367.1 (hypothetical protein [Escherichia coli])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 174/182 (95.60%), Postives = 177/182 (97.25%), Query Frame = 0 

Query: 3   SSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMKVW 62
           SSILSSA VASVNSASPAQASMVAPFTGLKSAAAFP+TRKNNDITTLASNGGRVQCMKVW
Sbjct: 1   SSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMKVW 60

Query: 63  PPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGYYDG 122
           PPLGLKKFETLSYLPDM+NEQL KE DYLLR GWIPCIEFDIHSGFVYRENHRSPGYYDG
Sbjct: 61  PPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYYDG 120

Query: 123 RYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPRFY 182
           RYWTMWKLPMFGCTDSSQVV EIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPRFY
Sbjct: 121 RYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPPRFY 180

Query: 183 SS 185
           +S
Sbjct: 181 TS 182

[Close]
BLAST of PI0003284 vs. NCBI nr
Match: XP_004135094.1 (ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus] >KGN52085.1 hypothetical protein Csa_009195 [Cucumis sativus] >QFS21936.1 chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis x hytivus] >QFS21937.1 chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 2.5e-95
Identity = 171/185 (92.43%), Postives = 180/185 (97.30%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN-DITTLASNGGRVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKS+A FPITRKNN DITTLASNGG+VQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPDM+NEQL+KECDYLLRNGW+PC+EFDI SGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 185
           RFYSS
Sbjct: 181 RFYSS 185

[Close]
BLAST of PI0003284 vs. NCBI nr
Match: CCF55356.1 (ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 5.5e-95
Identity = 171/185 (92.43%), Postives = 180/185 (97.30%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN-DITTLASNGGRVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKS+A FPITRKNN DITTLASNGG+VQCM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPDM+NEQL+KECDYLLRNGW+PC+EFDI SGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 185
           RFYSS
Sbjct: 181 RFYSS 185

[Close]
BLAST of PI0003284 vs. NCBI nr
Match: QFS21935.1 (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis x hytivus])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 168/185 (90.81%), Postives = 176/185 (95.14%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRKNN-DITTLASNGGRVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKS+A FPITRKNN DITTLASNGG+VQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPPLG+KKFETLSYLPDM+NEQLAKE DYLLR GWIPC+EF   SGFVYRE+HRSPGY
Sbjct: 61  KVWPPLGVKKFETLSYLPDMSNEQLAKEVDYLLRKGWIPCVEFQCESGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 185
           RFYSS
Sbjct: 181 RFYSS 185

[Close]
BLAST of PI0003284 vs. TAIR 10
Match: AT5G38410.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 293.9 bits (751), Expect = 9.1e-80
Identity = 137/182 (75.27%), Postives = 160/182 (87.91%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRK-NNDITTLASNGGRVQCM 60
           MASS+LSSA V +    SPAQA+MVAPFTGLKS+AAFP+TRK N DIT++ASNGGRV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPD+++ +LAKE DYLLRN WIPC+EF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV+ E+EE KKEYP A+IR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 182
            F
Sbjct: 181 SF 178

[Close]
BLAST of PI0003284 vs. TAIR 10
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-79
Identity = 136/182 (74.73%), Postives = 159/182 (87.36%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRK-NNDITTLASNGGRVQCM 60
           MASS+LSSA V +    SPAQA+MVAPFTGLKS+A+FP+TRK NNDIT++ SNGGRV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPD+ + +LAKE DYLLRN WIPC+EF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV+ E+EE KKEYP A+IR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 182
            F
Sbjct: 181 SF 178

[Close]
BLAST of PI0003284 vs. TAIR 10
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-78
Identity = 134/182 (73.63%), Postives = 158/182 (86.81%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRK-NNDITTLASNGGRVQCM 60
           MASS+ SS  V +    SPAQA+MVAPFTGLKS+A+FP+TRK NNDIT++ SNGGRV CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPD+++ +LAKE DYLLRN WIPC+EF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV+ E+EE KKEYP A+IR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 182
            F
Sbjct: 181 SF 178

[Close]
BLAST of PI0003284 vs. TAIR 10
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A )

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-78
Identity = 135/182 (74.18%), Postives = 158/182 (86.81%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRK-NNDITTLASNGGRVQCM 60
           MASS+LSSA +     ASPAQA+MVAPF GLKS+AAFP TRK NNDIT++ SNGGRV CM
Sbjct: 1   MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIHSGFVYRENHRSPGY 120
           +VWPP+G KKFETLSYLPD+ + +LAKE DYL+RN WIPC+EF++  GFVYRE+  SPGY
Sbjct: 61  QVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV+ E+EE KKEYP+A+IR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 182
            F
Sbjct: 181 SF 178

[Close]
BLAST of PI0003284 vs. TAIR 10
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 287.7 bits (735), Expect = 6.5e-78
Identity = 137/187 (73.26%), Postives = 160/187 (85.56%), Query Frame = 0 

Query: 1   MASSILSSAGVASVNSASPAQASMVAPFTGLKSAAAFPITRK-NNDITTLASNGGRVQCM 60
           MASS+LSSA V +    SPAQA+MVAPFTGLKS+AAFP+TRK N DIT++ASNGGRV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDMNNEQLAKECDYLLRNGWIPCIEFDIH-----SGFVYRENH 120
           KVWPP+G KKFETLSYLPD+++ +LAKE DYLLRN WIPC+EF++       GFVYRE+ 
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHG 120

Query: 121 RSPGYYDGRYWTMWKLPMFGCTDSSQVVAEIEEAKKEYPDAYIRVIGFDNVRQVQCISFI 180
            +PGYYDGRYWTMWKLP+FGCTDS+QV+ E+EE KKEYP A+IR+IGFDN RQVQCISFI
Sbjct: 121 NTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 180

Query: 181 AYKPPRF 182
           AYKPP F
Sbjct: 181 AYKPPSF 183

The following BLAST results are available for this feature:
BLAST of PI0003284 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P084743.1e-9391.06Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu... [more]
P240073.6e-8175.96Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifoli... [more]
Q029801.8e-8075.96Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3... [more]
P327645.7e-7975.56Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tube... [more]
P160329.8e-7975.69Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 OS=Mesembryanth... [more]
BLAST of PI0003284 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CCQ35.7e-9895.65Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3BG445.7e-9895.65Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0KR461.2e-9592.43Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=rb... [more]
A0A5P8U3Q41.2e-9592.43Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 G... [more]
H8WR562.7e-9592.43Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=ru... [more]
BLAST of PI0003284 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_082918361.11.2e-9795.65ribulose-1,5-bisphosphate carboxylase small subunit [Pseudoalteromonas sp. MQS00... [more]
HAP2066367.11.0e-9695.60hypothetical protein [Escherichia coli][more]
XP_004135094.12.5e-9592.43ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus] >... [more]
CCF55356.15.5e-9592.43ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus][more]
QFS21935.12.5e-9290.81chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucum... [more]
BLAST of PI0003284 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38410.19.1e-8075.27Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38430.11.5e-7974.73Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38420.11.0e-7873.63Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT1G67090.11.3e-7874.18ribulose bisphosphate carboxylase small chain 1A [more]
AT5G38410.36.5e-7873.26Ribulose bisphosphate carboxylase (small chain) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024681Ribulose bisphosphate carboxylase, small subunitPRINTSPR00152RUBISCOSMALLcoord: 96..111
score: 55.04
coord: 118..147
score: 83.55
coord: 152..178
score: 83.31
coord: 21..38
score: 76.88
coord: 47..65
score: 73.4
coord: 68..94
score: 69.37
IPR000894Ribulose bisphosphate carboxylase small subunit, domainSMARTSM00961RuBisCO_small_2_acoord: 69..178
e-value: 8.0E-39
score: 145.0
IPR000894Ribulose bisphosphate carboxylase small subunit, domainPFAMPF00101RuBisCO_smallcoord: 70..178
e-value: 1.0E-39
score: 134.4
IPR000894Ribulose bisphosphate carboxylase small subunit, domainCDDcd03527RuBisCO_smallcoord: 68..178
e-value: 3.37511E-61
score: 183.227
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 2..44
e-value: 2.5E-21
score: 75.6
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyGENE3D3.30.190.10Ribulose bisphosphate carboxylase, small subunitcoord: 59..184
e-value: 1.3E-60
score: 204.9
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilySUPERFAMILY55239RuBisCO, small subunitcoord: 59..179
NoneNo IPR availablePANTHERPTHR31262:SF18RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAINcoord: 1..182
NoneNo IPR availablePANTHERPTHR31262RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTICcoord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003284.1PI0003284.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009507 chloroplast
cellular_component GO:0009506 plasmodesma