PI0003273 (gene) Melon (PI 482460) v1

Overview
NamePI0003273
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr01: 16532960 .. 16533424 (+)
RNA-Seq ExpressionPI0003273
SyntenyPI0003273
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGACGGTGAACAACCCGAATTCGTGCTTGACCCTGAAATTGAACGAACTTTTCAGCATAACAGAAGAAGAGGGAGGCAACAAAGAGTGAACATAATGACAAACAATAACAACAACCAAAATGTTCCTCCCCAACAAGCTGCCCAAGAACAAAATGCCGCCTACATGACCCATGATTTAGACAGACCGATTATGTCGTATGCTTCGCCAAACCTCTATAACTTCAGCCTAGGAATTGCCTACCTTGTGTTCGGCGAAAATACAAGATTTGAGATCAATCCTGTTATAATACAGATCATTCAGAACACCAGACAGTTTGGTGGTCACCCTAGTGAAGATCCACACGAGCATATTCATAGTTTCTACTCCATTTATGTTTCCTTTCACATGTCTGACATATTGCCTAAAGACGTACGATTTGTCCTCTTCCCATTAACACTGAGGGATGAGGCAAAGAGATGA

mRNA sequence

ATGAGTGACGGTGAACAACCCGAATTCGTGCTTGACCCTGAAATTGAACGAACTTTTCAGCATAACAGAAGAAGAGGGAGGCAACAAAGAGTGAACATAATGACAAACAATAACAACAACCAAAATGTTCCTCCCCAACAAGCTGCCCAAGAACAAAATGCCGCCTACATGACCCATGATTTAGACAGACCGATTATGTCGTATGCTTCGCCAAACCTCTATAACTTCAGCCTAGGAATTGCCTACCTTGTGTTCGGCGAAAATACAAGATTTGAGATCAATCCTGTTATAATACAGATCATTCAGAACACCAGACAGTTTGGTGGTCACCCTAGTGAAGATCCACACGAGCATATTCATAGTTTCTACTCCATTTATGTTTCCTTTCACATGTCTGACATATTGCCTAAAGACGTACGATTTGTCCTCTTCCCATTAACACTGAGGGATGAGGCAAAGAGATGA

Coding sequence (CDS)

ATGAGTGACGGTGAACAACCCGAATTCGTGCTTGACCCTGAAATTGAACGAACTTTTCAGCATAACAGAAGAAGAGGGAGGCAACAAAGAGTGAACATAATGACAAACAATAACAACAACCAAAATGTTCCTCCCCAACAAGCTGCCCAAGAACAAAATGCCGCCTACATGACCCATGATTTAGACAGACCGATTATGTCGTATGCTTCGCCAAACCTCTATAACTTCAGCCTAGGAATTGCCTACCTTGTGTTCGGCGAAAATACAAGATTTGAGATCAATCCTGTTATAATACAGATCATTCAGAACACCAGACAGTTTGGTGGTCACCCTAGTGAAGATCCACACGAGCATATTCATAGTTTCTACTCCATTTATGTTTCCTTTCACATGTCTGACATATTGCCTAAAGACGTACGATTTGTCCTCTTCCCATTAACACTGAGGGATGAGGCAAAGAGATGA

Protein sequence

MSDGEQPEFVLDPEIERTFQHNRRRGRQQRVNIMTNNNNNQNVPPQQAAQEQNAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINPVIIQIIQNTRQFGGHPSEDPHEHIHSFYSIYVSFHMSDILPKDVRFVLFPLTLRDEAKR
Homology
BLAST of PI0003273 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 0

Query: 36  NNNNNQNVPPQQAAQEQNAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINP 95
           NN NNQ +P  QAAQ  N  Y+  D DRPI SYASPNLY+F+ GIAY  F ENTRFEI  
Sbjct: 2   NNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKL 61

Query: 96  VIIQIIQNTRQFGGHPSEDPHEHIHSFYSIYVSFHMSDILPKDVRFVLFPL 147
           V++QIIQN  QF  HP +DPH++I +FYSI  SFHM  I  +++RF  F L
Sbjct: 62  VMLQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0003273 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.2e-25
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 39  NNQNVPPQQAAQEQNAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINPVII 98
           NNQN P  Q  QEQN AY+ HDLD+PI SYASPNLY+F+ GIAYL FGEN  FEI  +++
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 99  QIIQNTRQFGGHPSEDPHEHIHSFYSIYVSFHM 132
            + QN  QFGGHP EDP++HI +FY I  SF+M
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNM 94

BLAST of PI0003273 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 37  NNNNQNVPPQQAAQEQ-NAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINP 96
           +N N  VP   A Q Q N   + H+LD PI +Y S NLY+F+LGIAYLVFGEN  FE+ P
Sbjct: 3   SNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKP 62

Query: 97  VIIQIIQNTRQFGGHPSEDPHEHIHSFYSIYVSFHMSD 134
           V++Q+IQ   QF G+  EDPHEHI SFYSI  SFHMS+
Sbjct: 63  VMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSN 100

BLAST of PI0003273 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.8e-20
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 0

Query: 1   MSDGEQPEFVLDPEIERTFQHNRR-RGRQQRVNIMTNNNNNQNVPPQQAAQEQNAAYMTH 60
           MS+GEQP+FV+D EIER FQ NRR R R+QR N  +N+ NNQ  P  QA Q  N  Y+ H
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTN-KSNSQNNQEAPANQAIQVVNLTYLAH 60

Query: 61  DLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINPVIIQIIQ---NTR 106
           + DRPI S  SPNLY F+ GI Y  FGEN RF+I PV++ ++    NTR
Sbjct: 61  NRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLLHRKINTR 108

BLAST of PI0003273 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.9e-20
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 0

Query: 1   MSDGEQPEFVLDPEIERTFQHNRR-RGRQQRVNIMTNNNNNQNVPPQQAAQEQNAAYMTH 60
           MS+GEQP+FV+D EIER FQ NRR R R+QR N  +N+ NNQ  P  QA Q  N  Y+ H
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTN-KSNSQNNQEAPANQAIQVVNLTYLAH 60

Query: 61  DLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINPVIIQIIQ---NTR 106
           + DRPI S  SPNLY F+ GI Y  FGEN RF+I PV++ ++    NTR
Sbjct: 61  NRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLLYRKINTR 108

BLAST of PI0003273 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-26
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 0

Query: 36  NNNNNQNVPPQQAAQEQNAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINP 95
           NN NNQ +P  QAAQ  N  Y+  D DRPI SYASPNLY+F+ GIAY  F ENTRFEI  
Sbjct: 2   NNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKL 61

Query: 96  VIIQIIQNTRQFGGHPSEDPHEHIHSFYSIYVSFHMSDILPKDVRFVLFPL 147
           V++QIIQN  QF  HP +DPH++I +FYSI  SFHM  I  +++RF  F L
Sbjct: 62  VMLQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0003273 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-24
Identity = 71/169 (42.01%), Postives = 96/169 (56.80%), Query Frame = 0

Query: 1   MSDGEQPEFVLDPEIERTFQHNRRRGRQQRVNIMTNNN----NNQNVPPQ---------- 60
           MS+G+ P F +DPEIERTF+   R+ +Q+R N     N     NQ   PQ          
Sbjct: 2   MSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQ 61

Query: 61  -QAAQEQNAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINPVIIQIIQNTR 120
             A  + N   + HD +RP+  YASPNLYNF+ GI    F  N RFE+ PV++Q++Q   
Sbjct: 62  EHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAG 121

Query: 121 QFGGHPSEDPHEHIHSFYSIYVSFHMSDILPKDVRFVLFPLTLRDEAKR 155
           QFGG   EDPH H+ SF  I  +F M+ +    +R  LFP +LRDEA++
Sbjct: 122 QFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQ 170

BLAST of PI0003273 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 39  NNQNVPPQQAAQEQNAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINPVII 98
           NNQN P  Q  QEQN AY+ HDLD+PI SYASPNLY+F+ GIAYL FGEN  FEI  +++
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 99  QIIQNTRQFGGHPSEDPHEHIHSFYSIYVSFHM 132
            + QN  QFGGHP EDP++HI +FY I  SF+M
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNM 94

BLAST of PI0003273 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-22
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 0

Query: 1   MSDGEQPEFVLDPEIERTFQHNRRRGR--QQRVNIMTNNNNNQNVPPQQAAQE--QNAAY 60
           MS    PEF  +PEI+ TF+    + R  ++R+N M +NNNN+     Q      Q+  +
Sbjct: 1   MSTRTDPEFEANPEIDHTFRTRAHQNRAWRRRIN-MADNNNNEAPEGNQGVNRPVQDPVF 60

Query: 61  MTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINPVIIQIIQNTRQFGGHPSEDPH 120
           +  D + PI +YA+PNLY+FS GI+  +  EN RFEI PV++Q+IQN RQF     E+PH
Sbjct: 61  LAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPH 120

Query: 121 EHIHSFYSIYVSFHMSDILPKDVRFVLFPLTLRDEAKR 155
            H+  F  +  +F +  I P  +R  LFP TLRD+AKR
Sbjct: 121 AHLTIFVEMCSTFSIPGITPVGIRLYLFPYTLRDKAKR 157

BLAST of PI0003273 vs. NCBI nr
Match: TYK02149.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-21
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 37  NNNNQNVPPQQAAQEQ-NAAYMTHDLDRPIMSYASPNLYNFSLGIAYLVFGENTRFEINP 96
           +N N  VP   A Q Q N   + H+LD PI +Y S NLY+F+LGIAYLVFGEN  FE+ P
Sbjct: 3   SNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKP 62

Query: 97  VIIQIIQNTRQFGGHPSEDPHEHIHSFYSIYVSFHMSD 134
           V++Q+IQ   QF G+  EDPHEHI SFYSI  SFHMS+
Sbjct: 63  VMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSN 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U71.3e-2658.56Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN89.2e-2562.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVN11.6e-2158.16Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UXZ26.8e-2055.05Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5D3CAB58.9e-2055.05Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
KAA0062403.12.6e-2658.56putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
WP_217833177.11.4e-2442.01retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
KAA0051815.11.9e-2462.37hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
XP_038887458.15.2e-2242.41uncharacterized protein LOC120077591 [Benincasa hispida][more]
TYK02149.13.3e-2158.16putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003273.1PI0003273.1mRNA