PI0003251 (gene) Melon (PI 482460) v1

Overview


Name	PI0003251
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr01: 6466909 .. 6467334 (-)
RNA-Seq Expression	PI0003251
Synteny	PI0003251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGTCCAATCCAAAGCGATATGCTGACCTCATATCTCAACCAACCATTATGTTTCGAAGGAGCTAATTTCAAGCGTTGGAAACGAAAAATGTTATTTTTATTAACTTTGAAGAAGGTTGCCACTGCATGCACTACCGAAAAGCCAAAGATTTCAGAAACTTATCCAACAAATGTGCAAATCCAAAGTCACAACACCTGGACAAAGTCTGACTTCATTTGTAAGAATTTAATACTCAATGGACTTACTGACGAGCTTTATGACTACTACAGTACCATGTCCATCGCAAAAGAAGTTTGGGATGCGTTGCAAAAGAAGTATGACGTCAAAGAAGCTGGATCCAAGAAGTATATGGTAAGTCAGTATTTGCGGTACCAGATGACTGACGACAGATCAGTGGAGGCCCAATCACACGAGTTGTAG

mRNA sequence

ATGACTGGTCCAATCCAAAGCGATATGCTGACCTCATATCTCAACCAACCATTATGTTTCGAAGGAGCTAATTTCAAGCGTTGGAAACGAAAAATGTTATTTTTATTAACTTTGAAGAAGGTTGCCACTGCATGCACTACCGAAAAGCCAAAGATTTCAGAAACTTATCCAACAAATGTGCAAATCCAAAGTCACAACACCTGGACAAAGTCTGACTTCATTTGTAAGAATTTAATACTCAATGGACTTACTGACGAGCTTTATGACTACTACAGTACCATGTCCATCGCAAAAGAAGTTTGGGATGCGTTGCAAAAGAAGTATGACGTCAAAGAAGCTGGATCCAAGAAGTATATGGTAAGTCAGTATTTGCGGTACCAGATGACTGACGACAGATCAGTGGAGGCCCAATCACACGAGTTGTAG

Coding sequence (CDS)

ATGACTGGTCCAATCCAAAGCGATATGCTGACCTCATATCTCAACCAACCATTATGTTTCGAAGGAGCTAATTTCAAGCGTTGGAAACGAAAAATGTTATTTTTATTAACTTTGAAGAAGGTTGCCACTGCATGCACTACCGAAAAGCCAAAGATTTCAGAAACTTATCCAACAAATGTGCAAATCCAAAGTCACAACACCTGGACAAAGTCTGACTTCATTTGTAAGAATTTAATACTCAATGGACTTACTGACGAGCTTTATGACTACTACAGTACCATGTCCATCGCAAAAGAAGTTTGGGATGCGTTGCAAAAGAAGTATGACGTCAAAGAAGCTGGATCCAAGAAGTATATGGTAAGTCAGTATTTGCGGTACCAGATGACTGACGACAGATCAGTGGAGGCCCAATCACACGAGTTGTAG

Protein sequence

MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMVSQYLRYQMTDDRSVEAQSHEL

Homology

[Close]

BLAST of PI0003251 vs. ExPASy TrEMBL
Match: A0A5A7UYY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00440 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54
Identity = 107/141 (75.89%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNV 60
           M G IQSD+++S LN+   FEGA+FKRWK+K+LF LTLKKVATACTTEKPK+SE  PT  
Sbjct: 1   MAGQIQSDLMSSDLNRLFRFEGAHFKRWKQKLLFFLTLKKVATACTTEKPKVSEKDPTEE 60

Query: 61  QIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMV 120
           Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEVWDALQKKYD +EAGSKKY V
Sbjct: 61  QLKNLATWTETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAV 120

Query: 121 SQYLRYQMTDDRSVEAQSHEL 142
           S+YLRYQMTDD+SVEAQSHE+
Sbjct: 121 SRYLRYQMTDDKSVEAQSHEI 141

[Close]

BLAST of PI0003251 vs. ExPASy TrEMBL
Match: A0A5A7USR3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005210 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.5e-53
Identity = 104/141 (73.76%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNV 60
           M G IQSD+++  LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKP++ E  PT  
Sbjct: 1   MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEK 60

Query: 61  QIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMV 120
           Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEVWDALQKKYD +EA SKKY +
Sbjct: 61  QLKNLATWTETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAWSKKYAI 120

Query: 121 SQYLRYQMTDDRSVEAQSHEL 142
           S+YLRYQMTDD+SVEAQSHE+
Sbjct: 121 SRYLRYQMTDDKSVEAQSHEI 141

[Close]

BLAST of PI0003251 vs. ExPASy TrEMBL
Match: A0A5D3DC59 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00340 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.6e-53
Identity = 105/141 (74.47%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 1   MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNV 60
           M G IQSD+++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEK K+SE  P   
Sbjct: 1   MVGQIQSDLMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKLKVSEKDPIEE 60

Query: 61  QIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMV 120
           Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+  KEVWDALQKKYD KEA SKKY V
Sbjct: 61  QLKNLATWTETDFICKNLILNGLTDELYDYYSTMTTGKEVWDALQKKYDTKEARSKKYAV 120

Query: 121 SQYLRYQMTDDRSVEAQSHEL 142
           S+YLRYQMTDD+SVE QSHE+
Sbjct: 121 SRYLRYQMTDDKSVETQSHEI 141

[Close]

BLAST of PI0003251 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.1e-52
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 9   MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTW 68
           +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKPK+SE  PT  Q+++  TW
Sbjct: 5   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVSEKDPTKEQLKNLTTW 64

Query: 69  TKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMVSQYLRYQM 128
           T++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKYD +EAGSKKY VS+YLRYQM
Sbjct: 65  TETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQM 124

Query: 129 TDDRSVEAQSHEL 142
           TDDRSVEAQSHE+
Sbjct: 125 TDDRSVEAQSHEI 137

[Close]

BLAST of PI0003251 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 101/133 (75.94%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 9   MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTW 68
           +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACT EKPK+SE  PT  Q+++  TW
Sbjct: 5   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTW 64

Query: 69  TKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMVSQYLRYQM 128
           T++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKYD +EAGSKKY VS+YLRYQM
Sbjct: 65  TETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQM 124

Query: 129 TDDRSVEAQSHEL 142
           TDDRSVEAQSHE+
Sbjct: 125 TDDRSVEAQSHEI 137

[Close]

BLAST of PI0003251 vs. NCBI nr
Match: KAA0060458.1 (uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK18543.1 uncharacterized protein E5676_scaffold119G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 107/141 (75.89%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNV 60
           M G IQSD+++S LN+   FEGA+FKRWK+K+LF LTLKKVATACTTEKPK+SE  PT  
Sbjct: 1   MAGQIQSDLMSSDLNRLFRFEGAHFKRWKQKLLFFLTLKKVATACTTEKPKVSEKDPTEE 60

Query: 61  QIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMV 120
           Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEVWDALQKKYD +EAGSKKY V
Sbjct: 61  QLKNLATWTETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAV 120

Query: 121 SQYLRYQMTDDRSVEAQSHEL 142
           S+YLRYQMTDD+SVEAQSHE+
Sbjct: 121 SRYLRYQMTDDKSVEAQSHEI 141

[Close]

BLAST of PI0003251 vs. NCBI nr
Match: KAA0058200.1 (uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 5.2e-53
Identity = 104/141 (73.76%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNV 60
           M G IQSD+++  LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKP++ E  PT  
Sbjct: 1   MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEK 60

Query: 61  QIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMV 120
           Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+ AKEVWDALQKKYD +EA SKKY +
Sbjct: 61  QLKNLATWTETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAWSKKYAI 120

Query: 121 SQYLRYQMTDDRSVEAQSHEL 142
           S+YLRYQMTDD+SVEAQSHE+
Sbjct: 121 SRYLRYQMTDDKSVEAQSHEI 141

[Close]

BLAST of PI0003251 vs. NCBI nr
Match: KAA0065374.1 (uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa] >TYK20869.1 uncharacterized protein E5676_scaffold682G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 105/141 (74.47%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 1   MTGPIQSDMLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNV 60
           M G IQSD+++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEK K+SE  P   
Sbjct: 1   MVGQIQSDLMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKLKVSEKDPIEE 60

Query: 61  QIQSHNTWTKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMV 120
           Q+++  TWT++DFICKNLILNGLTDELYDYYSTM+  KEVWDALQKKYD KEA SKKY V
Sbjct: 61  QLKNLATWTETDFICKNLILNGLTDELYDYYSTMTTGKEVWDALQKKYDTKEARSKKYAV 120

Query: 121 SQYLRYQMTDDRSVEAQSHEL 142
           S+YLRYQMTDD+SVE QSHE+
Sbjct: 121 SRYLRYQMTDDKSVETQSHEI 141

[Close]

BLAST of PI0003251 vs. NCBI nr
Match: KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 4.4e-52
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 9   MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTW 68
           +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACTTEKPK+SE  PT  Q+++  TW
Sbjct: 5   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVSEKDPTKEQLKNLTTW 64

Query: 69  TKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMVSQYLRYQM 128
           T++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKYD +EAGSKKY VS+YLRYQM
Sbjct: 65  TETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQM 124

Query: 129 TDDRSVEAQSHEL 142
           TDDRSVEAQSHE+
Sbjct: 125 TDDRSVEAQSHEI 137

[Close]

BLAST of PI0003251 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 2.2e-51
Identity = 101/133 (75.94%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 9   MLTSYLNQPLCFEGANFKRWKRKMLFLLTLKKVATACTTEKPKISETYPTNVQIQSHNTW 68
           +++S LN+P  FEGA+FKRWK+KMLF LTLKKVATACT EKPK+SE  PT  Q+++  TW
Sbjct: 5   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTW 64

Query: 69  TKSDFICKNLILNGLTDELYDYYSTMSIAKEVWDALQKKYDVKEAGSKKYMVSQYLRYQM 128
           T++DFICKNLILNGLTDELYDYYSTM+ AK+VW+ALQKKYD +EAGSKKY VS+YLRYQM
Sbjct: 65  TETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQM 124

Query: 129 TDDRSVEAQSHEL 142
           TDDRSVEAQSHE+
Sbjct: 125 TDDRSVEAQSHEI 137

The following BLAST results are available for this feature:

BLAST of PI0003251 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYY4	1.0e-54	75.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7USR3	2.5e-53	73.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DC59	5.6e-53	74.47	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7UA92	2.1e-52	76.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BDS3	1.1e-51	75.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0003251 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060458.1	2.1e-54	75.89	uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0058200.1	5.2e-53	73.76	uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]	[more]
KAA0065374.1	1.2e-52	74.47	uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa] >TYK20...	[more]
KAA0050409.1	4.4e-52	76.69	hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]	[more]
TYJ98000.1	2.2e-51	75.94	hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]	[more]

BLAST of PI0003251 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 68..140 e-value: 2.9E-10 score: 40.0
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 20..138
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 20..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003251.1	PI0003251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding