PI0003238 (gene) Melon (PI 482460) v1

Overview
NamePI0003238
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr07: 19322467 .. 19323764 (+)
RNA-Seq ExpressionPI0003238
SyntenyPI0003238
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATATGTAGGTATTTATCTGATGAAGTTTGAAGTACCACAAAGTCAATAACATATCAACATTTTCTAAAAAGTTGCCGGGAAGTAGGTTTTGAAAGCTATATCGATAATACAAATTTTTAAAAAATTAATATCTTTGTTATAAAAGAAAAAAACTATAACTCTAATTTAATATTATATTAAATTAACACTAAATATAAACTTAGACACACTAAAATTTATGTAATATTCTTTTTATTATTCTATATCATATTTTTGTGTTGTAAAAAGTAAATTATATACCATCCTAAATTCTTCTAAAAAATAAACCATCCTAAATTGGTTTAGTGGTACACTCACAATTACAAAATATAAAAATAAAAATTAAATTATTATGGATCAATTTGGTATAATACATTTAGAAAAGAAATATTTTATTTAAAACTTAAATTATTTATTAAAACTAATTAGAATTAAAATGTAAGTGAATAGAATTTTAAAACTTAGCTGATTTGATTTAGAAAAATTTGGTTAAAGTAGTAGAAGATTAAGAACAGTTAGTGTTTTTAGAAATGAAAGTAAATCTAGGAATTGAATGGTTTTGTGAAAGCAGATAATATAAAATAGAATTATAAAAAAGAAAAAGAAAAAGAATTATGTGTTAATTGGGAATTAAGAATAATCATGGAAATTGAGTGTATGTATAAATAGAAATAGGTAGGGAAGGTTTGAGTATCCGGTTTTTAATATTTAATGGAAAAAGGATATTATTTTCTCGTGTGAAGAAGAGTGCCGTTCTTCGCATGTACAAAATTTCCAGTATCAATCTTCTGTTCTTCATCTTCCAATTCCCTCTTCGTTCTCGTCGTCTCTCGCATGGCGGACCAATAATCACAAACTCAATTCCCATTCTCTATCAAACCATAATTCAATCCCCATTTTCCCCTAAACTCCTCCCCCCCACCCCCCCTCCCGATTTCTCATTCTTCTCCTACTCCCAACCTTATTCTTATTGCATTCTTCTCACACGCATTGCTTTCATCACTTACCCAAACTCCTTTTCTCTTCCCTTCCTTCCATTTTCAATCGCTACTCTTAAGGTCAGTATTCTTCCTTAATCCTTCCCTTCATATTGCTTATTTGTTAGGATTTACTTTGGTTTATTTCGTTTTTGAGATTTTTGTTTTTGATTATTGGTTTTGGAATCGAAGTTTATGTTATGCACCATGCTCTAGGGTTTTATTATTTGCACTTCTGTTAGTTATTGTTGTTTTTTTCCTGATGTTTTACTCCATTTTAGGGGTCTTCTGATTGA

mRNA sequence

ATGGATTATATTGCCGTTCTTCGCATGTACAAAATTTCCAGTATCAATCTTCTGTTCTTCATCTTCCAATTCCCTCTTCGTTCTCGTCGTCTCTCGCATGGCGGACCAATAATCACAAACTCAATTCCCATTCTCTATCAAACCATAATTCAATCCCCATTTTCCCCTAAACTCCTCCCCCCCACCCCCCCTCCCGATTTCTCATTCTTCTCCTACTCCCAACCTTATTCTTATTGCATTCTTCTCACACGCATTGCTTTCATCACTTACCCAAACTCCTTTTCTCTTCCCTTCCTTCCATTTTCAATCGCTACTCTTAAGGGGTCTTCTGATTGA

Coding sequence (CDS)

ATGGATTATATTGCCGTTCTTCGCATGTACAAAATTTCCAGTATCAATCTTCTGTTCTTCATCTTCCAATTCCCTCTTCGTTCTCGTCGTCTCTCGCATGGCGGACCAATAATCACAAACTCAATTCCCATTCTCTATCAAACCATAATTCAATCCCCATTTTCCCCTAAACTCCTCCCCCCCACCCCCCCTCCCGATTTCTCATTCTTCTCCTACTCCCAACCTTATTCTTATTGCATTCTTCTCACACGCATTGCTTTCATCACTTACCCAAACTCCTTTTCTCTTCCCTTCCTTCCATTTTCAATCGCTACTCTTAAGGGGTCTTCTGATTGA

Protein sequence

MDYIAVLRMYKISSINLLFFIFQFPLRSRRLSHGGPIITNSIPILYQTIIQSPFSPKLLPPTPPPDFSFFSYSQPYSYCILLTRIAFITYPNSFSLPFLPFSIATLKGSSD
Homology
[Close]
BLAST of PI0003238 vs. ExPASy TrEMBL
Match: A0A0A0KY92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377190 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0 

Query: 10  YKISSINLLFFIFQFPLRSRRLSHGGPIITNSIPILYQTIIQSPFSPKLLPPTPPPDFSF 69
           YKISSINLLFFIFQFPLRSRRLSHGGPIITNSIPILYQTIIQSPFSPKLL   P PDFSF
Sbjct: 14  YKISSINLLFFIFQFPLRSRRLSHGGPIITNSIPILYQTIIQSPFSPKLL---PTPDFSF 73

Query: 70  FSYSQPYSYCILLTRIAFITYPNSFSLPFLPFSIATLKGSS 111
           FSYSQPYSYCILLTRIAFIT+P+SFSLPFLPFSIATLKGSS
Sbjct: 74  FSYSQPYSYCILLTRIAFITHPDSFSLPFLPFSIATLKGSS 111

[Close]
BLAST of PI0003238 vs. NCBI nr
Match: KGN54605.1 (hypothetical protein Csa_012238 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0 

Query: 10  YKISSINLLFFIFQFPLRSRRLSHGGPIITNSIPILYQTIIQSPFSPKLLPPTPPPDFSF 69
           YKISSINLLFFIFQFPLRSRRLSHGGPIITNSIPILYQTIIQSPFSPKLL   P PDFSF
Sbjct: 14  YKISSINLLFFIFQFPLRSRRLSHGGPIITNSIPILYQTIIQSPFSPKLL---PTPDFSF 73

Query: 70  FSYSQPYSYCILLTRIAFITYPNSFSLPFLPFSIATLKGSS 111
           FSYSQPYSYCILLTRIAFIT+P+SFSLPFLPFSIATLKGSS
Sbjct: 74  FSYSQPYSYCILLTRIAFITHPDSFSLPFLPFSIATLKGSS 111

The following BLAST results are available for this feature:
BLAST of PI0003238 vs.
Match NameE-valueIdentityDescription
BLAST of PI0003238 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY922.4e-4394.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377190 PE=4 SV=1[more]
BLAST of PI0003238 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54605.15.0e-4394.06hypothetical protein Csa_012238 [Cucumis sativus][more]
BLAST of PI0003238 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003238.1PI0003238.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane