PI0003172 (gene) Melon (PI 482460) v1

Overview


Name	PI0003172
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pre-mRNA-splicing factor SYF2
Location	chr11: 28652570 .. 28655986 (-)
RNA-Seq Expression	PI0003172
Synteny	PI0003172

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTATTAATATTTTTGGGAGGGATCTTGTGCAATTCTTCTCCCTTCTTCCCAAAACGCGAAGAGGAATCTGTTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCGTGTTCTAACCCAAGCGGAAAAACTTAGGTTTCAGGTACTGTTCTGTAGCTCTCTTTTAGCATCACTTCTTCTTTATTACTTTTCTCATAGTTTCCTATGCTTGCTTTTGCTTGAATTTCGGTTTTGCATCGCAAGATTTGACTGGAAGTAGCGATTGTTTTCATGCTGCTATTTGTTTTTTTTTTCTTGCTTGTTCGCTTTCCGAGAATACGAACAATAAAAAGGATTGTTGTTTTCCCCCTTTTTTGGGTCTATCTTTTGGATGTTATAGTGGACTCAATCCTGTGTTATGTTGATGTTCTTCGCTTCTTTTCCTCGGAAGTTGAATTGTTCTAGTTGGCGCAGGAATTGATTTTGGAACATACAAAGACATGTAAAAGAATCACTTTTCCGTCGGATAACTGCGTTGGTTCGATAAATTCGTTTGATTTAACAAGATTCAGTTGGAAATTTGAATGTTTTTTTTTTTTTGCTTGTTTGATTGATCATGTAATGCGACAATTGATCAATGATACCGTTTTACGGTTGTTTCGTTTATGGGTTTAAGAGTTCATAATTTTTTTATAAGATTTTTGAGCTTTGTTTAATTATGTCTCTTTATTTGCAGTGTATTATTGGAGTAAGATAAGTTGTTGCAGAGATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAGTCAGAAAAACGAGCCAGGTTTTTTAGCATACTACAATGTCTTTACAATTATCTTGAGCATCATAACTTTCTTTAATTGTCATCACTGTTTACCCTTTTGTCAAATTATTAACGCCCTCTTCGATTTACTTTTTTCTTCAAAATTGTTCACAATTGGCTCTATAAATTGTTTAATCGTCTTTGATTCCCTCCACGTTTCAATTTCTGATTATGTCATTAATTACCTTTTCCTTCTCATTTAATTTTTTCTTGTGAATTGTGATCACAGTTCCCACTTCATCAGAAGCTGTACAAGCTGGTCGAAGTGGTTCTTCCAGTTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGACGAAGAAGGGCACAGTGATGGTGATCTTGACAAATTTAGTGGCGAGGAAAATGTGGAAGGCGACTTCACAAAACTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGGTAATTTTCTATAATTTTTAAAAAAGTAACAATCAATTATTATCCAGTAGTCATGACTTAGGGATGGTGGATGCAGAATGAGGCTCGGAAAGCTAATCAAACAGCAATTGCTGCTGAGAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCAGCAGAGGCCAAATATAAGAAATGGGAGAAGGATCCAGCACCCTATGGATGGGATGGTGAGTCTCTATCTTTTGTGCACATGGGCTCTTTTGAATACGTGCAGCTGCACCTATGTTTCCCTTGACATAAAATTATACTATGCTGATTTTAGCTTTTGTGTGTGTAGACAGATGCATTTTTTTAGTAATTTGATAAGGAACCCTATTATGTTGGTTGATGATGGAAACATGATCTGATTCTAGGATATAGGTATTATGTGATGAGATGTCTAGGATATGTATGCATGCTCCTGCCCTAATTGGTGTGAACTCTTGTCGTTGCTGATATCTTCTTCCTTATTCATGTAGTATGGTATTTCATAGCTACGGTCCTCCATGTTTCTCTCTGGTACAGAACCATGTAAATTGATTGTTTAATTTTGATTTGTATCATATTCCAATATAATTACTTTTCTTTACGGATGGGGGATTGCTTGGGTATAAAGTTTACTTAACTGGTTGTATTTCACCTATGTCTTGTCACTATGTTTACACTTGTATTAATAAAAGGTTAAACTGCGTTTGTTTTGACAGTCTTTAACCAGAAAACATTGTATAATGCATACAAGAAGAGGACGAAGAATGTAAATATTGACCTTGAGGACTATAATAAAATGAAAGAAACTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGTAATGTTAGTTCTACTGTATAATTTCCAGTCTCGACCGTAGATGCAATTATTAGATTTCTTAGGATATGGCTTTCCCCACTACTCTGCAGGCACCTAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAAGACCGAGATGAGAAGCGAAAGTCATTTAGCCGTAGGAGGAAGTTCCATGAAGACAAGGATATCGATTCCATCAATGACCGTAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTACCTGATTAAGGTATTGTTTAGAAGTGGCTCTGGTTCATAAGTCAAGTTAGTTCCTATATACAACTTTTTTTCTCTCCATATGCTTGATACATGTTTTCCTCTTTTATTGTTTTTCACTCCCTGATAAAGAAGACGCACATCTACTTACGTGCAATCTTAACTGCACCCATCTTCATGTATCTCTTTCACTTTCAAAGTGAAAAATATTTTAAAAAAAGAAATTTTTGTGACGTGGCAACTTGGAATTAGGCACTTGAGTGGGTGGGCGGGCGGGCTGCGAAAAGATGTCGCAACCAAGTGTTTTTCTCCTTTTTACCCTTGCCCCCCTTTCTCTGTTGTAACAAAATGTATCTTCTATGTTCTTTGTTTGGCTGAAATTATGTTTTTCTTTCTAACCATGGTTTCCTTTGCTTGATTGAATTTTATATTCTTTTTCGTTTTTCTGTAGGATTTTCGAGGAAGATCGGACTTCTAGTAGTTGGGAGTATTTAAAGCTTTCCTCCTTTAATTTCGAAAAGAAGTTATTCTGTAAAAGATTTCTGGCAAAGCTACAGAATTCTCCTTTAAGTGAAGAGAAAATTGTAAGGTCACATGTCTTAGATATGCAATGTACCATGTAGCAATATATTTGACAATAGCAACTTACTTTGATTGAGTTTGTTTCATTGTGAATACCTTTGTTTCTTTCAACAACTACGAATTACCCCAAACAAAGGATATCATTTTTTCTTCCCCTCTTCACAAATATGGTATAAGAACGAGTAATTTTGACTTACTGATATCAA

mRNA sequence

AATTATTAATATTTTTGGGAGGGATCTTGTGCAATTCTTCTCCCTTCTTCCCAAAACGCGAAGAGGAATCTGTTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCGTGTTCTAACCCAAGCGGAAAAACTTAGGTTTCAGTGTATTATTGGAGTAAGATAAGTTGTTGCAGAGATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAGTCAGAAAAACGAGCCAGTTCCCACTTCATCAGAAGCTGTACAAGCTGGTCGAAGTGGTTCTTCCAGTTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGACGAAGAAGGGCACAGTGATGGTGATCTTGACAAATTTAGTGGCGAGGAAAATGTGGAAGGCGACTTCACAAAACTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCTCGGAAAGCTAATCAAACAGCAATTGCTGCTGAGAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCAGCAGAGGCCAAATATAAGAAATGGGAGAAGGATCCAGCACCCTATGGATGGGATGTCTTTAACCAGAAAACATTGTATAATGCATACAAGAAGAGGACGAAGAATGTAAATATTGACCTTGAGGACTATAATAAAATGAAAGAAACTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGCACCTAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAAGACCGAGATGAGAAGCGAAAGTCATTTAGCCGTAGGAGGAAGTTCCATGAAGACAAGGATATCGATTCCATCAATGACCGTAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTACCTGATTAAGGATTTTCGAGGAAGATCGGACTTCTAGTAGTTGGGAGTATTTAAAGCTTTCCTCCTTTAATTTCGAAAAGAAGTTATTCTGTAAAAGATTTCTGGCAAAGCTACAGAATTCTCCTTTAAGTGAAGAGAAAATTGTAAGGTCACATGTCTTAGATATGCAATGTACCATGTAGCAATATATTTGACAATAGCAACTTACTTTGATTGAGTTTGTTTCATTGTGAATACCTTTGTTTCTTTCAACAACTACGAATTACCCCAAACAAAGGATATCATTTTTTCTTCCCCTCTTCACAAATATGGTATAAGAACGAGTAATTTTGACTTACTGATATCAA

Coding sequence (CDS)

ATGTCTGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAGTCAGAAAAACGAGCCAGTTCCCACTTCATCAGAAGCTGTACAAGCTGGTCGAAGTGGTTCTTCCAGTTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAAAAGCCTGACGAAGAAGGGCACAGTGATGGTGATCTTGACAAATTTAGTGGCGAGGAAAATGTGGAAGGCGACTTCACAAAACTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCTCGGAAAGCTAATCAAACAGCAATTGCTGCTGAGAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCAGCAGAGGCCAAATATAAGAAATGGGAGAAGGATCCAGCACCCTATGGATGGGATGTCTTTAACCAGAAAACATTGTATAATGCATACAAGAAGAGGACGAAGAATGTAAATATTGACCTTGAGGACTATAATAAAATGAAAGAAACTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGCACCTAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAAGACCGAGATGAGAAGCGAAAGTCATTTAGCCGTAGGAGGAAGTTCCATGAAGACAAGGATATCGATTCCATCAATGACCGTAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTACCTGATTAA

Protein sequence

MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGRSGSSSFVPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTALPD

Homology

[Close]

BLAST of PI0003172 vs. ExPASy Swiss-Prot
Match: Q8AVQ6 (Pre-mRNA-splicing factor syf2 OS=Xenopus laevis OX=8355 GN=syf2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.5e-26
Identity = 85/219 (38.81%), Postives = 125/219 (57.08%), Query Frame = 0


Query: 98  KLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPS--ESRGISKQKWLEDRKKKIGK 157
           K   R +K  E+ LK NEARK N   +  E K+ + PS  E+R    +  L++ +KK  +
Sbjct: 26  KREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWELKNEEKK--R 85

Query: 158 LLDANGLDMTKAYMLD--TQEAAEAKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNI 217
              ANG+D  +A +L+   ++A   + KK  K+P   G+  +    L   Y++ TK +  
Sbjct: 86  ECAANGVDFERAKLLEISAEDAERWERKKKRKNP-DLGFSDYAAAQL-RQYQRLTKQIKP 145

Query: 218 DLEDYNKMKETDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHE 277
           D+E+Y   KE   E +   S   Y      S+  ID MV +L+ + EKR+ +SRRR +++
Sbjct: 146 DMEEYEMEKEKQGELFYPTSDSLYHGTHVPSQSGIDRMVTDLEKQIEKREKYSRRRAYND 205

Query: 278 DKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTAL 313
           D DID IN+RN  FNKK ER +G+YT EIK NLERGTA+
Sbjct: 206 DADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 240

[Close]

BLAST of PI0003172 vs. ExPASy Swiss-Prot
Match: Q28G05 (Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis OX=8364 GN=syf2 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-25
Identity = 84/219 (38.36%), Postives = 125/219 (57.08%), Query Frame = 0


Query: 98  KLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPS--ESRGISKQKWLEDRKKKIGK 157
           K   R +K  E+ LK NEARK N   +  E K+ + PS  E+R    +  L++ +KK  +
Sbjct: 35  KREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWELKEEEKK--R 94

Query: 158 LLDANGLDMTKAYMLD--TQEAAEAKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNI 217
              ANG+D  +A +L+   ++A   + KK  K+P   G+  +    L   Y++ TK +  
Sbjct: 95  ECAANGVDYERAKLLEISAEDAERWERKKKRKNP-DLGFSDYAAAQL-RQYQRLTKQIKP 154

Query: 218 DLEDYNKMKETDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHE 277
           D+E+Y   K+   E +   S   Y      S+  ID MV +L+ + EKR+ +SRRR +++
Sbjct: 155 DMEEYEMEKQKQGEMFYPTSESLYHGTHIPSQSGIDRMVTDLEKQIEKREKYSRRRAYND 214

Query: 278 DKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTAL 313
           D DID IN+RN  FNKK ER +G+YT EIK NLERGTA+
Sbjct: 215 DADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

[Close]

BLAST of PI0003172 vs. ExPASy Swiss-Prot
Match: Q6DGP2 (Pre-mRNA-splicing factor syf2 OS=Danio rerio OX=7955 GN=syf2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.8e-24
Identity = 81/215 (37.67%), Postives = 124/215 (57.67%), Query Frame = 0


Query: 102 RKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSE---SRGISKQKWLEDRKKKIGKLLD 161
           R +K  E+  K NEARK N   +  E K+++ PS     +   + + L D+KKK      
Sbjct: 28  RLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKARLEYELLVDQKKK-ECAER 87

Query: 162 ANGLDMTKAYMLDTQEAAEAKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDY 221
               D  K   +  ++A   + KK +++P P G+  + +  L   Y++ TK +  D+E+Y
Sbjct: 88  GEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAEAQL-RQYQRLTKQIKPDMENY 147

Query: 222 NKMK-ETDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDI 281
            K K E   +F+  ++SL YG     S+D I+ MV +++ + EKR  +SRRR +++D DI
Sbjct: 148 EKQKEECGEDFHPTSNSLIYGTHVP-SKDSINRMVDDVEKQIEKRAKYSRRRAYNDDADI 207

Query: 282 DSINDRNEHFNKKIERAFGRYTLEIKNNLERGTAL 313
           D IN+RN  FNKK ER +G+YT EIK NLERGTA+
Sbjct: 208 DYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238

[Close]

BLAST of PI0003172 vs. ExPASy Swiss-Prot
Match: Q9D198 (Pre-mRNA-splicing factor SYF2 OS=Mus musculus OX=10090 GN=Syf2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.9e-24
Identity = 83/215 (38.60%), Postives = 125/215 (58.14%), Query Frame = 0


Query: 102 RKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPS--ESRGISKQKWLEDRKKKIGKLLDA 161
           R +K  E+ LK NEARK N   +  E K+++ P+  E++    +  L++ +KK  K   A
Sbjct: 32  RLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKK--KECAA 91

Query: 162 NGLDMTKAYMLD-TQEAAEAKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDY 221
            G D  K  +L+ + E AE   ++ +K     G+  +    L   Y + TK +  D+E Y
Sbjct: 92  RGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQL-RQYHRLTKQIKPDMESY 151

Query: 222 NKMKETDPE-FYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDI 281
            + +E   E F+  ++SL +G     SE+ ID MV +L+ + EKR  +SRRR +++D DI
Sbjct: 152 ERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLEKQIEKRDKYSRRRPYNDDADI 211

Query: 282 DSINDRNEHFNKKIERAFGRYTLEIKNNLERGTAL 313
           D IN+RN  FNKK ER +G+YT EIK NLERGTA+
Sbjct: 212 DYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

[Close]

BLAST of PI0003172 vs. ExPASy Swiss-Prot
Match: Q4QRB2 (Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus OX=10116 GN=Syf2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.9e-24
Identity = 83/215 (38.60%), Postives = 125/215 (58.14%), Query Frame = 0


Query: 102 RKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPS--ESRGISKQKWLEDRKKKIGKLLDA 161
           R +K  E+ LK NEARK N   +  E K+++ P+  E++    +  L++ +KK  K   A
Sbjct: 32  RLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKK--KECAA 91

Query: 162 NGLDMTKAYMLD-TQEAAEAKYKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDY 221
            G D  K  +L+ + E AE   ++ +K     G+  +    L   Y + TK +  D+E Y
Sbjct: 92  RGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQL-RQYHRLTKQIKPDMESY 151

Query: 222 NKMKETDPE-FYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDI 281
            + +E   E F+  ++SL +G     SE+ ID MV +L+ + EKR  +SRRR +++D DI
Sbjct: 152 ERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLEKQIEKRDKYSRRRPYNDDADI 211

Query: 282 DSINDRNEHFNKKIERAFGRYTLEIKNNLERGTAL 313
           D IN+RN  FNKK ER +G+YT EIK NLERGTA+
Sbjct: 212 DYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

[Close]

BLAST of PI0003172 vs. ExPASy TrEMBL
Match: A0A0A0LJ81 (Pre-mRNA-splicing factor SYF2 OS=Cucumis sativus OX=3659 GN=Csa_2G270830 PE=3 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 3.3e-170
Identity = 309/315 (98.10%), Postives = 312/315 (99.05%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHECSEYCFKVIAE+KARSQKNEPVPTSSE VQAGR SGSSSF
Sbjct: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAELKARSQKNEPVPTSSETVQAGRSSGSSSF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAE K
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAENK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. ExPASy TrEMBL
Match: A0A5A7TRR3 (Pre-mRNA-splicing factor SYF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001060 PE=3 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 6.2e-169
Identity = 306/315 (97.14%), Postives = 312/315 (99.05%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHECSEYCFKVIA++KARSQKNEPVPTSSE VQAGR SGSSSF
Sbjct: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAQIKARSQKNEPVPTSSETVQAGRSSGSSSF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEE VEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEEIVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTK+YMLDTQEAAEAK
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKSYMLDTQEAAEAK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKI+NMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIENMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. ExPASy TrEMBL
Match: A0A1S3C6T5 (Pre-mRNA-splicing factor SYF2 OS=Cucumis melo OX=3656 GN=LOC103497339 PE=3 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 6.2e-169
Identity = 306/315 (97.14%), Postives = 312/315 (99.05%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHECSEYCFKVIA++KARSQKNEPVPTSSE VQAGR SGSSSF
Sbjct: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAQIKARSQKNEPVPTSSETVQAGRSSGSSSF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEE VEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEEIVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTK+YMLDTQEAAEAK
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKSYMLDTQEAAEAK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKI+NMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIENMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. ExPASy TrEMBL
Match: A0A6J1FXE9 (Pre-mRNA-splicing factor SYF2 OS=Cucurbita moschata OX=3662 GN=LOC111448448 PE=3 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 7.1e-165
Identity = 298/315 (94.60%), Postives = 310/315 (98.41%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHEC+EYCFKVIAEVKAR+Q+NEPVPTSSE VQAGR SGSS+F
Sbjct: 1   MSDEGRVHPDCRNASNPYHECTEYCFKVIAEVKARNQQNEPVPTSSEGVQAGRSSGSSNF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDL DEKP+EEGHSDGD DKFSG ENVEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLRDEKPNEEGHSDGDTDKFSGGENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDM+KAYMLDTQEAAE+K
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMSKAYMLDTQEAAESK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLY+AYKKRTKNVN+DLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYDAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKIDNMVKELKDR+EKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIDNMVKELKDREEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. ExPASy TrEMBL
Match: A0A6J1JD37 (Pre-mRNA-splicing factor SYF2 OS=Cucurbita maxima OX=3661 GN=LOC111483944 PE=3 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 1.6e-164
Identity = 297/315 (94.29%), Postives = 310/315 (98.41%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHEC+EYCFKVIAEVKAR+Q+NEPVPTSSE VQAGR SGSS+F
Sbjct: 1   MSDEGRVHPDCRNASNPYHECTEYCFKVIAEVKARNQQNEPVPTSSEGVQAGRSSGSSNF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDL DEKP+EEGHSDGD DKFSG ENVEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLRDEKPNEEGHSDGDTDKFSGGENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDM+KAYMLDTQEAAE+K
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMSKAYMLDTQEAAESK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLY+AYKKRTKNVN+DLE+YNKMK++DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYDAYKKRTKNVNVDLEEYNKMKDSDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKIDNMVKELKDR+EKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIDNMVKELKDREEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. NCBI nr
Match: XP_011649295.1 (pre-mRNA-splicing factor syf2 [Cucumis sativus] >KGN61940.1 hypothetical protein Csa_006692 [Cucumis sativus])

HSP 1 Score: 607.4 bits (1565), Expect = 6.7e-170
Identity = 309/315 (98.10%), Postives = 312/315 (99.05%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHECSEYCFKVIAE+KARSQKNEPVPTSSE VQAGR SGSSSF
Sbjct: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAELKARSQKNEPVPTSSETVQAGRSSGSSSF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAE K
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAENK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. NCBI nr
Match: XP_038900868.1 (pre-mRNA-splicing factor syf2 [Benincasa hispida])

HSP 1 Score: 604.4 bits (1557), Expect = 5.7e-169
Identity = 306/314 (97.45%), Postives = 311/314 (99.04%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGRSGSSSFV 60
           MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPT SEAVQAG SGSS+FV
Sbjct: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTLSEAVQAGHSGSSNFV 60

Query: 61  PPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKAN 120
           PPDEYEDLHDEKPD EGHSDGD+DKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKAN
Sbjct: 61  PPDEYEDLHDEKPD-EGHSDGDIDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKAN 120

Query: 121 QTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAKY 180
           QTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAKY
Sbjct: 121 QTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAKY 180

Query: 181 KKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGKA 240
           KKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVN+DLE+YNKMKE+DPEFYREASSLQYGKA
Sbjct: 181 KKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGKA 240

Query: 241 PKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTL 300
           PKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTL
Sbjct: 241 PKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTL 300

Query: 301 EIKNNLERGTALPD 315
           EIKNNLERGTALPD
Sbjct: 301 EIKNNLERGTALPD 313

[Close]

BLAST of PI0003172 vs. NCBI nr
Match: XP_008457705.1 (PREDICTED: pre-mRNA-splicing factor syf2 [Cucumis melo] >KAA0045744.1 pre-mRNA-splicing factor syf2 [Cucumis melo var. makuwa] >TYJ99538.1 pre-mRNA-splicing factor syf2 [Cucumis melo var. makuwa])

HSP 1 Score: 603.2 bits (1554), Expect = 1.3e-168
Identity = 306/315 (97.14%), Postives = 312/315 (99.05%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHECSEYCFKVIA++KARSQKNEPVPTSSE VQAGR SGSSSF
Sbjct: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAQIKARSQKNEPVPTSSETVQAGRSSGSSSF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEE VEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEEIVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTK+YMLDTQEAAEAK
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKSYMLDTQEAAEAK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKI+NMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIENMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. NCBI nr
Match: XP_022943827.1 (pre-mRNA-splicing factor syf2-like [Cucurbita moschata] >XP_022943828.1 pre-mRNA-splicing factor syf2-like [Cucurbita moschata])

HSP 1 Score: 589.7 bits (1519), Expect = 1.5e-164
Identity = 298/315 (94.60%), Postives = 310/315 (98.41%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHEC+EYCFKVIAEVKAR+Q+NEPVPTSSE VQAGR SGSS+F
Sbjct: 1   MSDEGRVHPDCRNASNPYHECTEYCFKVIAEVKARNQQNEPVPTSSEGVQAGRSSGSSNF 60

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDL DEKP+EEGHSDGD DKFSG ENVEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 61  VPPDEYEDLRDEKPNEEGHSDGDTDKFSGGENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDM+KAYMLDTQEAAE+K
Sbjct: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMSKAYMLDTQEAAESK 180

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLY+AYKKRTKNVN+DLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 181 YKKWEKDPAPYGWDVFNQKTLYDAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGK 240

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKIDNMVKELKDR+EKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 241 APKISEDKIDNMVKELKDREEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 301 LEIKNNLERGTALPD 315

[Close]

BLAST of PI0003172 vs. NCBI nr
Match: KAG7010847.1 (Pre-mRNA-splicing factor syf2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 589.7 bits (1519), Expect = 1.5e-164
Identity = 298/315 (94.60%), Postives = 310/315 (98.41%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGR-SGSSSF 60
           MSDEGRVHPDCRNASNPYHEC+EYCFKVIAEVKAR+Q+NEPVPTSSE VQAGR SGSS+F
Sbjct: 433 MSDEGRVHPDCRNASNPYHECTEYCFKVIAEVKARNQQNEPVPTSSEGVQAGRSSGSSNF 492

Query: 61  VPPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKA 120
           VPPDEYEDL DEKP+EEGHSDGD DKFSG ENVEGDFTKLTGRKKKLFEIRLKMNEARKA
Sbjct: 493 VPPDEYEDLRDEKPNEEGHSDGDTDKFSGGENVEGDFTKLTGRKKKLFEIRLKMNEARKA 552

Query: 121 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAK 180
           NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDM+KAYMLDTQEAAE+K
Sbjct: 553 NQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMSKAYMLDTQEAAESK 612

Query: 181 YKKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGK 240
           YKKWEKDPAPYGWDVFNQKTLY+AYKKRTKNVN+DLE+YNKMKE+DPEFYREASSLQYGK
Sbjct: 613 YKKWEKDPAPYGWDVFNQKTLYDAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGK 672

Query: 241 APKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 300
           APKISEDKIDNMVKELKDR+EKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT
Sbjct: 673 APKISEDKIDNMVKELKDREEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYT 732

Query: 301 LEIKNNLERGTALPD 315
           LEIKNNLERGTALPD
Sbjct: 733 LEIKNNLERGTALPD 747

[Close]

BLAST of PI0003172 vs. TAIR 10
Match: AT2G16860.1 (GCIP-interacting family protein )

HSP 1 Score: 415.6 bits (1067), Expect = 3.5e-116
Identity = 217/314 (69.11%), Postives = 253/314 (80.57%), Query Frame = 0


Query: 1   MSDEGRVHPDCRNASNPYHECSEYCFKVIAEVKARSQKNEPVPTSSEAVQAGRSGSSSFV 60
           M  E RVHPDC NASNPYHEC EYCFK IAE KAR +K              ++   + V
Sbjct: 1   MVSERRVHPDCINASNPYHECVEYCFKKIAEAKARFEK--------------QNTGLAKV 60

Query: 61  PPDEYEDLHDEKPDEEGHSDGDLDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKAN 120
                E L D++ +E+   + + ++ + E  V  D T+LTGR+KKLFE+RLKMNEARK+N
Sbjct: 61  HEQTREPLDDKRIEEDSSEEEEEEEDNQEPQV--DVTQLTGRQKKLFELRLKMNEARKSN 120

Query: 121 QTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAEAKY 180
           QT + +EKKKME P+E++GISKQKWLE RKKKIGKLLDANGLDMT+AYMLDTQEAAE+KY
Sbjct: 121 QTDVGSEKKKMEAPTETKGISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKY 180

Query: 181 KKWEKDPAPYGWDVFNQKTLYNAYKKRTKNVNIDLEDYNKMKETDPEFYREASSLQYGKA 240
           KKWEK+P P GWDVFNQKTLYNAYKKRTKN+ +DLE+YN+M+  DPEFYREASSLQYGKA
Sbjct: 181 KKWEKEPTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKA 240

Query: 241 PKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTL 300
           PK S+DKID M KEL DR++KR+ FSRRRKF E+KDIDSINDRNEHFNKKIERAFG+YTL
Sbjct: 241 PKTSQDKIDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTL 298

Query: 301 EIKNNLERGTALPD 315
           EIKNNLERGTALPD
Sbjct: 301 EIKNNLERGTALPD 298

The following BLAST results are available for this feature:

BLAST of PI0003172 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AVQ6	9.5e-26	38.81	Pre-mRNA-splicing factor syf2 OS=Xenopus laevis OX=8355 GN=syf2 PE=2 SV=1	[more]
Q28G05	2.8e-25	38.36	Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis OX=8364 GN=syf2 PE=2 SV=1	[more]
Q6DGP2	6.8e-24	37.67	Pre-mRNA-splicing factor syf2 OS=Danio rerio OX=7955 GN=syf2 PE=2 SV=1	[more]
Q9D198	8.9e-24	38.60	Pre-mRNA-splicing factor SYF2 OS=Mus musculus OX=10090 GN=Syf2 PE=2 SV=1	[more]
Q4QRB2	8.9e-24	38.60	Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus OX=10116 GN=Syf2 PE=2 SV=1	[more]

BLAST of PI0003172 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ81	3.3e-170	98.10	Pre-mRNA-splicing factor SYF2 OS=Cucumis sativus OX=3659 GN=Csa_2G270830 PE=3 SV...	[more]
A0A5A7TRR3	6.2e-169	97.14	Pre-mRNA-splicing factor SYF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3C6T5	6.2e-169	97.14	Pre-mRNA-splicing factor SYF2 OS=Cucumis melo OX=3656 GN=LOC103497339 PE=3 SV=1	[more]
A0A6J1FXE9	7.1e-165	94.60	Pre-mRNA-splicing factor SYF2 OS=Cucurbita moschata OX=3662 GN=LOC111448448 PE=3...	[more]
A0A6J1JD37	1.6e-164	94.29	Pre-mRNA-splicing factor SYF2 OS=Cucurbita maxima OX=3661 GN=LOC111483944 PE=3 S...	[more]

BLAST of PI0003172 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649295.1	6.7e-170	98.10	pre-mRNA-splicing factor syf2 [Cucumis sativus] >KGN61940.1 hypothetical protein...	[more]
XP_038900868.1	5.7e-169	97.45	pre-mRNA-splicing factor syf2 [Benincasa hispida]	[more]
XP_008457705.1	1.3e-168	97.14	PREDICTED: pre-mRNA-splicing factor syf2 [Cucumis melo] >KAA0045744.1 pre-mRNA-s...	[more]
XP_022943827.1	1.5e-164	94.60	pre-mRNA-splicing factor syf2-like [Cucurbita moschata] >XP_022943828.1 pre-mRNA...	[more]
KAG7010847.1	1.5e-164	94.60	Pre-mRNA-splicing factor syf2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of PI0003172 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16860.1	3.5e-116	69.11	GCIP-interacting family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013260	mRNA splicing factor SYF2	PFAM	PF08231	SYF2	coord: 160..307 e-value: 2.3E-34 score: 119.1
IPR013260	mRNA splicing factor SYF2	PANTHER	PTHR13264	GCIP-INTERACTING PROTEIN P29	coord: 1..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..57
None	No IPR available	PANTHER	PTHR13264:SF5	PRE-MRNA-SPLICING FACTOR SYF2	coord: 1..314

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003172.1	PI0003172.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071014	post-mRNA release spliceosomal complex
cellular_component	GO:0000974	Prp19 complex