Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTCAAAGGCAACACTTCCAAAGCTCTAAGCAACACCGAAAAGAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGACATGCCTCCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAAGAAAATTCTGTGATTGAGGAGCACGGTTCGTCTTCTGAACGCTCAAGTGAGAAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTCGATATGAGAGAAGATAGAATGGCAGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGCGGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGACAATTTTGCAGGAAAGTCAACCACAAAATTCGACCTCAATTGCATCGTTGTCTGTTCAACAGTTGCAGGATATGATAGTCAACTCCATCCGGACTCAATATGGTGGAACTGCTCAAACTTTCTCTTCATATTCCAAGCCATATACAAAGAGGATCGACAATCTGAAAATGCCGATTGGTTACCAGCCACCTAAGTTCCAGCAATTTGATGGAAAAGGCAATCCAAAGCAACACGTGGCCCACTTTATCGAAACATGTGAAACTGCTGGTGCGCGAGGAGATTTGTTGGTTAGACAGTTCGTCCGAACTCTCAAGGGAAATGCCTTCGATTGGTACACCGATCTTGAGCCTGAAACCATTGATAGTTGGGAGCAGCTTGAGAGGGAATTTCTCAACCGCTTCTACAGCACTCGACGTATTATTAGCATGATAGAGCTAATGGCCACCAAGCAGCGAAAGGGCAAGCTGGTCATTGACTACATTAATCGCTGGAGAGCATTAAGCCTTGACTGCAAAGACAAATTAACTGAACTGTCAGCAGTGGAAATGTGCACCCAAGGAATGCATTGGGGGCTTCTGTACATCTTGCAGGGAATAAAACCTCGCACCTTTGAAGAGTTAGCAACTAGAGCTCATGATATGGAGTTAAGTATTGCTAATAGGGGAAACAATGACCTGCTGATCCCAGAAGTGAGAAAGGAAAAGAAGGAAATGAAGAGCACCCTGAAGGTATCAAAGGGTGCTACCAAAGAAGCTATGGTCGTTACTATGACCCCTTTAAAGTTCGTTCCTAAAGAGAAGAAGATGGATAAACGCCAAGATGAAGGCGAAAAAAGACGCCTAACATTGAAAGAGAGGCAAGAAAAAGTTTACCCTTTTCCAGACTCTGACTTACCTGATATGTTAGAGCAATTACTGGAAAAACAACTCATTCAATTTCCTGAATGTAAACGACCAGTAGAAATTGGGAAGGTAAATGATCCAAATTACTGCAAATATCATCGAGTTATCAGCCACCCTATAGAGAAATGCTTCGTGTTAAAATAGTTAATTTTGAAATTAGCTCTAGACAAAAAAATTGAACTTGATCTCGATGATGTGGCACAAACGAATCATATTGCAGTAATGAGTCATGCAGAGGGTCAATCACTTACTACAGGTAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCGGAGGTCTTACAGAAAAATGACATCCGAGCTGTTCACCCAAAAGAAGAAGGAAAGCATGTGGAGAATGCTGACGAGGGATGGACGCTAGTCACGCGTCGAAAAAAACAAAAACAAAATTACTCTAAAAAAGAGTCTTGCTTGTACCGAGAGTATAAAAGAAAGAGTAAGTCTTAGAGAAGAAAAACAAGGAGGGATGCAAGGAAGTTTCAACCAATCACTAAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTTTTCCCTGAGAACTTTCCATTCGATATTGTTTCGTGCCATGCTGTCAGTACAACCGAAGATGACGCTTCTCCCTCAAATTCACCAGAAGTCAATACAACTGGGGATGACACTTCTCCCTCAAAGTCCGCAGAAGCAACAACCAAGCTAGAGGAATTGCCTTCTATGGACATAAATGATTTGTTGTCACTCCCACGAGAAATCAAAGATACAATTATCGAGATATTAAAAAATGATGATGTCTCGACTATTCCTGCATCACAGACGAAGGCATGTGATTCAGGTTGTACATCGATATCATTCAACGATGAAGATTTGCTACTTGGGTCAAGGCTTCATAACAGACCTTTATTTGTGTCTGGATATGTTCGCGAGCAAAAGCTCAATCAAATTCTCATCGATAATGGCTCTGCCGTCAACATTCTACCAAAATCAACCATGAATCGATTAGGTATCTCAATCGAGGAGTTATCAAGCAGTAAATTGGTGATTCAAGGCTTTAATCAAAGAGCACAGCGGGCGATAGGCACTGTTCGTCTGGAGGTTACCATAGGCGACTTGCAGGCAAACACTATATTTCATGTGATCGATTCAAGAACCACTTACAAGTTGTTGTTAGGACGACCGTGGATTCATGAAAACGGAGTAGTGACTTCCACACTCCATCAATGCTTTAAATTTTATAAACAAGGAATAAAGAAAGTTGATGCTGACACTAAGCCATTTTCAGAAGCTGAGTCTCACTTTGCGGATGCAAAATTTTACACAAAAGGAGATGATATAAGTGAGGTCATATCGACTGAAGTTCCCGTAACCAAAGGCACTTATAAGCCCGAGCAAGGAACGATCACAACAAAAAAGTCAAAGGAACTGAATGTACTCAAGGGTCGAGAGAATGATAAAATAGCGACCCAAACTAAGTCTGAAGTGCCGACAAAAGAAAGTATAGCGATTCCTCAAGAAAAAGCCTCAAAACCTCCCGTTTTACGTTACATTCCACTATCTCGACGCAAGAAGGGAGAATCGCCATTTGCAGAAAATTCACAAAATTTGGCGGTTGGAGGTGTCGAAATATTAAAGGAAAGTTTTACCACGCCACTTACCAAGATGGATAAAGGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGACGGAAGGATTCGATCCAAAAGCATATAAGTTGATGGCAAAGGCGGGTTATGACTTTACAACCCGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTAGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAA
mRNA sequence
ATGACATTCAAAGGCAACACTTCCAAAGCTCTAAGCAACACCGAAAAGAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGACATGCCTCCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAAGAAAATTCTGTGATTGAGGAGCACGGTTCGTCTTCTGAACGCTCAAGTGAGAAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTCGATATGAGAGAAGATAGAATGGCAGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGCGGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGACAATTTTGCAGGAAAGTAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCGGAGGTCTTACAGAAAAATGACATCCGAGCTGTTCACCCAAAAGAAGAAGGAAAGCATGTGGAGAATGCTGACGAGGGATGGACGCTAGTCACGCGTCGAAAAAAACAAAAACAAAATTACTCTAAAAAAGAGTCTTGCTTGTACCGAGAGTATAAAAGAAAGAACTTTTTCCCTGAGAACTTTCCATTCGATATTGTTTCGTGCCATGCTGTCAGTACAACCGAAGATGACGCTTCTCCCTCAAATTCACCAGAAGTCAATACAACTGGGGATGACACTTCTCCCTCAAAGTCCGCAGAAGCAACAACCAAGCTAGAGGAATTGCCTTCTATGGACATAAATGATTTGTTGTCACTCCCACGAGAAATCAAAGATACAATTATCGAGATATTAAAAAATGATGATGTCTCGACTATTCCTGCATCACAGACGAAGGCATTTCCCGTAACCAAAGGCACTTATAAGCCCGAGCAAGGAACGATCACAACAAAAAAGTCAAAGGAACTGAATGTACTCAAGGGTCGAGAGAATGATAAAATAGCGACCCAAACTAAGTCTGAAGTGCCGACAAAAGAAAGTATAGCGATTCCTCAAGAAAAAGCCTCAAAACCTCCCGTTTTACGTTACATTCCACTATCTCGACGCAAGAAGGGAGAATCGCCATTTGCAGAAAATTCACAAAATTTGGCGGTTGGAGGTGTCGAAATATTAAAGGAAAGTTTTACCACGCCACTTACCAAGATGGATAAAGGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGACGGAAGGATTCGATCCAAAAGCATATAAGTTGATGGCAAAGGCGGGTTATGACTTTACAACCCGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTAGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAA
Coding sequence (CDS)
ATGACATTCAAAGGCAACACTTCCAAAGCTCTAAGCAACACCGAAAAGAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGACATGCCTCCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAAGAAAATTCTGTGATTGAGGAGCACGGTTCGTCTTCTGAACGCTCAAGTGAGAAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTCGATATGAGAGAAGATAGAATGGCAGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGCGGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGACAATTTTGCAGGAAAGTAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCGGAGGTCTTACAGAAAAATGACATCCGAGCTGTTCACCCAAAAGAAGAAGGAAAGCATGTGGAGAATGCTGACGAGGGATGGACGCTAGTCACGCGTCGAAAAAAACAAAAACAAAATTACTCTAAAAAAGAGTCTTGCTTGTACCGAGAGTATAAAAGAAAGAACTTTTTCCCTGAGAACTTTCCATTCGATATTGTTTCGTGCCATGCTGTCAGTACAACCGAAGATGACGCTTCTCCCTCAAATTCACCAGAAGTCAATACAACTGGGGATGACACTTCTCCCTCAAAGTCCGCAGAAGCAACAACCAAGCTAGAGGAATTGCCTTCTATGGACATAAATGATTTGTTGTCACTCCCACGAGAAATCAAAGATACAATTATCGAGATATTAAAAAATGATGATGTCTCGACTATTCCTGCATCACAGACGAAGGCATTTCCCGTAACCAAAGGCACTTATAAGCCCGAGCAAGGAACGATCACAACAAAAAAGTCAAAGGAACTGAATGTACTCAAGGGTCGAGAGAATGATAAAATAGCGACCCAAACTAAGTCTGAAGTGCCGACAAAAGAAAGTATAGCGATTCCTCAAGAAAAAGCCTCAAAACCTCCCGTTTTACGTTACATTCCACTATCTCGACGCAAGAAGGGAGAATCGCCATTTGCAGAAAATTCACAAAATTTGGCGGTTGGAGGTGTCGAAATATTAAAGGAAAGTTTTACCACGCCACTTACCAAGATGGATAAAGGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGACGGAAGGATTCGATCCAAAAGCATATAAGTTGATGGCAAAGGCGGGTTATGACTTTACAACCCGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTAGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAA
Protein sequence
MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENSVIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKTILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPKEEGKHVENADEGWTLVTRRKKQKQNYSKKESCLYREYKRKNFFPENFPFDIVSCHAVSTTEDDASPSNSPEVNTTGDDTSPSKSAEATTKLEELPSMDINDLLSLPREIKDTIIEILKNDDVSTIPASQTKAFPVTKGTYKPEQGTITTKKSKELNVLKGRENDKIATQTKSEVPTKESIAIPQEKASKPPVLRYIPLSRRKKGESPFAENSQNLAVGGVEILKESFTTPLTKMDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTRTEFKSKIFDERHGLSPSKGSFKSKDILYQIQDQELGISLPSLFE
Homology
BLAST of PI0003112 vs. ExPASy TrEMBL
Match:
A0A5A7UJR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001080 PE=4 SV=1)
HSP 1 Score: 402.5 bits (1033), Expect = 2.6e-108
Identity = 326/959 (33.99%), Postives = 385/959 (40.15%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
MT +GNTSKALS+ KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
I+EH S SER +E++P PNIMSVMVTDVD EDRMA+LEKKVNM +K VEERD+EIA L
Sbjct: 61 AIDEHNSLSERLNEEVPQPNIMSVMVTDVDTSEDRMADLEKKVNMFMKGVEERDFEIALL 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT+T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQKLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 RPAQTLMERAIQNNMLLISSKLMKLLGIKPRTFEELATRAQDMELSIANRGNNDLLVPEV 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 RKEKKEVKSTQKVLKGATKEAMVVSTTPLKLVSKEKKMEKRQDEGKKRRPTLKERQEKIY 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 PFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGKVNDPNYCKYHRVISHPVEKCFVLKELI 360
Query: 361 ------------------------------------SLIQFGSLEPVVIYSSPEVLQKND 420
SLIQFGSLE +VIYSSPE LQ ND
Sbjct: 361 LKLALDKKIELELDDVAQTNHAAVIIQSDSRLSIIGSLIQFGSLELIVIYSSPEDLQNND 420
Query: 421 IRAVHPKEEGKHVENADEGWTLVTRRKKQKQNYSKKESCLYREYKR-------------- 480
R PKEE K V+N +EGWTLVTRRKK+KQ++S+KES YR Y+
Sbjct: 421 FRTDSPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGSYRTYRSKGKSQRRNTRKNLR 480
Query: 481 ---------------------KNFFPENFPFDIVSCHAVSTTEDDASPSNSPEVNTTGDD 502
K+FFP+NFP +I SCH STTE+DA PSN
Sbjct: 481 KFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIFSCHTTSTTEEDAFPSN---------- 540
BLAST of PI0003112 vs. ExPASy TrEMBL
Match:
A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)
HSP 1 Score: 383.6 bits (984), Expect = 1.2e-102
Identity = 331/1025 (32.29%), Postives = 387/1025 (37.76%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
M +GNTSKA S+ +KRPNTRSRSR+ QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN
Sbjct: 1 MISQGNTSKAFSDIDKRPNTRSRSRKIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
I+EH S ERS+E+ PNIMSVMVTDVD EDRMAELEKKVNML+KAVEERD+ IA
Sbjct: 61 TIDEHNSLYERSNEEASQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFVIALF 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTQTIKNVNKGKAIMQESQPQNSTSIASLSIQQLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 GPAQTHPSFNSSMERAIQNNMLLISSKLVKLLYTGLEPESIDSWNLLERDFLNRFYSTRR 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 IVSMIELTATKQRKGEPFIDYINHWRALSLDCKDRLTELSAVEMCTQGIHWGLLYILQGI 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 KPLPEVRKEKKEVKSTQKVLKGATKEAMVVSTTPLKLVSKEKKMEKRQDEGENRRPTLKE 360
Query: 361 ------------------------------------------------------------ 420
Sbjct: 361 RQEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPTEMGRVNDPIIANIIGSSAIPLKNVF 420
Query: 421 ------------------------------------------SLIQFGSLEPVVIYSSPE 480
SLIQFGSLEPVVIYSSPE
Sbjct: 421 VLKELILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPE 480
Query: 481 VLQKNDIRAVHPKEEGKHVENADEGWTLVTRRKKQKQNYSKKESCLYREYKR-------- 502
LQ ND RA PKEE K V+N +EGWTLVTRRKK+KQ++S+KES YR Y+
Sbjct: 481 DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRN 540
BLAST of PI0003112 vs. ExPASy TrEMBL
Match:
A0A5D3BIH8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001270 PE=4 SV=1)
HSP 1 Score: 372.5 bits (955), Expect = 2.8e-99
Identity = 334/1073 (31.13%), Postives = 391/1073 (36.44%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
MT +GNTSKALS+ KRPNTRSRSRE QSSEDMPPFEVAK+IW+++SKPPKGGI+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWKQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
I+EH S SERS+E++P PNIMSVMVTDVD EDRM LEKKVNM +KAVEERD+EIA L
Sbjct: 61 AIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMVVLEKKVNMHMKAVEERDFEIALL 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT+T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 GPAQTHPSFNSSMERGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEP 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 ESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYINRWRALSLDCKDRLTE 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 LSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGNNDLLVPEVRKEKKE 360
Query: 361 ------------------------------------------------------------ 420
Sbjct: 361 VKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEKRQDEGEKRRPTLKERQEKVYPFPDSD 420
Query: 421 ------------------------------------------------------------ 480
Sbjct: 421 LPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYCKYHRVISHPVEKCFVLKELILKLALD 480
Query: 481 ------------------------------SLIQFGSLEPVVIYSSPEVLQKNDIRAVHP 502
SLIQFGSLEPVVIYSSPE LQ ND RA P
Sbjct: 481 KKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQNNDFRADGP 540
BLAST of PI0003112 vs. ExPASy TrEMBL
Match:
A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)
HSP 1 Score: 370.2 bits (949), Expect = 1.4e-98
Identity = 336/1095 (30.68%), Postives = 394/1095 (35.98%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
MT +GNTSKALS+ KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
++EH S SERS+E++P PNIMSVMVTDVD EDRMAELEKKVNML+KAVEERD+EIA L
Sbjct: 61 AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT+T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 GPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 PVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360
Query: 361 ------------------------------------------------------------ 420
Sbjct: 361 LSIANRGNNDLLVPEVRKEKKEVKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEKRQDE 420
Query: 421 ------------------------------------------------------------ 480
Sbjct: 421 GEKRRPTLKERQEKVYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYCKYHR 480
Query: 481 ----------------------------------------------------SLIQFGSL 502
SLIQFGSL
Sbjct: 481 VISHPVEKCFVLKELILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSL 540
BLAST of PI0003112 vs. ExPASy TrEMBL
Match:
A0A5A7TSN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00760 PE=4 SV=1)
HSP 1 Score: 312.8 bits (800), Expect = 2.7e-81
Identity = 231/599 (38.56%), Postives = 289/599 (48.25%), Query Frame = 0
Query: 63 EEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASLRN 122
+ H + ER + P PN +D+ D++ E L++ E D +I
Sbjct: 160 KRHPTLKERQEKIYPFPN------SDLPDTLDQLLE-----KHLIQLPESLDKKI----- 219
Query: 123 HIESRDAAESSHTYTTKNKDKGKTILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPK 182
+E D +++H + + + SLIQFGSLEPVVIYSSPE LQ ND RA K
Sbjct: 220 ELELDDVTQTNHAAVIIQSNSRLSAI--GSLIQFGSLEPVVIYSSPEDLQNNDFRADGLK 279
Query: 183 EEGKHVENADEGWTLVTRRKKQKQNYSKKESCLYREYKR--------------------- 242
EE K V+N +EGWTLVTRRKK KQ++S+KES YR Y
Sbjct: 280 EEEKQVDNVEEGWTLVTRRKKHKQSFSQKESGSYRTYMSKGKSQRRNTRKNLRKFLPIIE 339
Query: 243 --------------KNFFPENFPFDIVSCHAVSTTEDDASPSNSPEVNTTGDDTSPSKSA 302
K+FFP+NFP +IVSCH STTE+DA P N +
Sbjct: 340 KSEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDAFPLN---------------AM 399
Query: 303 EATTKLEELPSMDINDLLSLPREIKDTIIEILKNDDVSTIPASQTKA------------- 362
+ T + E+L S+ INDLL+L RE+KDTIIEILKNDDVST S TKA
Sbjct: 400 KETPRPEDLLSLGINDLLTLSREVKDTIIEILKNDDVSTTVTSPTKACDSCCMSISFSDE 459
Query: 363 ------------------------------------------------------------ 422
Sbjct: 460 DLLLGSKLHNRPLYVSGYVREQRLNQILIDNGSAVNILPKSTMNQLGISVEELSNSKLLI 519
Query: 423 ---------------------------------------------------FPVTKGTYK 482
PVTKGT+K
Sbjct: 520 QGFNQGAQRAIGTGIWKVDADSRPFTKAESHFADAKFYTKSEDVSEIISTEVPVTKGTFK 579
Query: 483 PEQGTITTKKSKELNVLKGRENDKIATQTKSEVPTKESIAIPQEKASKPPVLRYIPLSRR 502
EQ IT+KK+ + + L ++N ++ T+TK P E IA Q++ S PPVLRYIPLSRR
Sbjct: 580 NEQEMITSKKTNKGDALNSQQNGELTTETKLRAPEAEKIATLQKEVSNPPVLRYIPLSRR 639
BLAST of PI0003112 vs. NCBI nr
Match:
KAA0053731.1 (uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa])
HSP 1 Score: 402.5 bits (1033), Expect = 5.3e-108
Identity = 326/959 (33.99%), Postives = 385/959 (40.15%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
MT +GNTSKALS+ KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
I+EH S SER +E++P PNIMSVMVTDVD EDRMA+LEKKVNM +K VEERD+EIA L
Sbjct: 61 AIDEHNSLSERLNEEVPQPNIMSVMVTDVDTSEDRMADLEKKVNMFMKGVEERDFEIALL 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT+T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQKLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 RPAQTLMERAIQNNMLLISSKLMKLLGIKPRTFEELATRAQDMELSIANRGNNDLLVPEV 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 RKEKKEVKSTQKVLKGATKEAMVVSTTPLKLVSKEKKMEKRQDEGKKRRPTLKERQEKIY 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 PFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGKVNDPNYCKYHRVISHPVEKCFVLKELI 360
Query: 361 ------------------------------------SLIQFGSLEPVVIYSSPEVLQKND 420
SLIQFGSLE +VIYSSPE LQ ND
Sbjct: 361 LKLALDKKIELELDDVAQTNHAAVIIQSDSRLSIIGSLIQFGSLELIVIYSSPEDLQNND 420
Query: 421 IRAVHPKEEGKHVENADEGWTLVTRRKKQKQNYSKKESCLYREYKR-------------- 480
R PKEE K V+N +EGWTLVTRRKK+KQ++S+KES YR Y+
Sbjct: 421 FRTDSPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGSYRTYRSKGKSQRRNTRKNLR 480
Query: 481 ---------------------KNFFPENFPFDIVSCHAVSTTEDDASPSNSPEVNTTGDD 502
K+FFP+NFP +I SCH STTE+DA PSN
Sbjct: 481 KFLPIIEESEGLSRPRRPIILKDFFPKNFPMEIFSCHTTSTTEEDAFPSN---------- 540
BLAST of PI0003112 vs. NCBI nr
Match:
TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])
HSP 1 Score: 383.6 bits (984), Expect = 2.5e-102
Identity = 331/1025 (32.29%), Postives = 387/1025 (37.76%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
M +GNTSKA S+ +KRPNTRSRSR+ QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN
Sbjct: 1 MISQGNTSKAFSDIDKRPNTRSRSRKIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
I+EH S ERS+E+ PNIMSVMVTDVD EDRMAELEKKVNML+KAVEERD+ IA
Sbjct: 61 TIDEHNSLYERSNEEASQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFVIALF 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTQTIKNVNKGKAIMQESQPQNSTSIASLSIQQLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 GPAQTHPSFNSSMERAIQNNMLLISSKLVKLLYTGLEPESIDSWNLLERDFLNRFYSTRR 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 IVSMIELTATKQRKGEPFIDYINHWRALSLDCKDRLTELSAVEMCTQGIHWGLLYILQGI 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 KPLPEVRKEKKEVKSTQKVLKGATKEAMVVSTTPLKLVSKEKKMEKRQDEGENRRPTLKE 360
Query: 361 ------------------------------------------------------------ 420
Sbjct: 361 RQEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPTEMGRVNDPIIANIIGSSAIPLKNVF 420
Query: 421 ------------------------------------------SLIQFGSLEPVVIYSSPE 480
SLIQFGSLEPVVIYSSPE
Sbjct: 421 VLKELILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPE 480
Query: 481 VLQKNDIRAVHPKEEGKHVENADEGWTLVTRRKKQKQNYSKKESCLYREYKR-------- 502
LQ ND RA PKEE K V+N +EGWTLVTRRKK+KQ++S+KES YR Y+
Sbjct: 481 DLQNNDFRADGPKEEEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRN 540
BLAST of PI0003112 vs. NCBI nr
Match:
TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])
HSP 1 Score: 372.5 bits (955), Expect = 5.9e-99
Identity = 334/1073 (31.13%), Postives = 391/1073 (36.44%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
MT +GNTSKALS+ KRPNTRSRSRE QSSEDMPPFEVAK+IW+++SKPPKGGI+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWKQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
I+EH S SERS+E++P PNIMSVMVTDVD EDRM LEKKVNM +KAVEERD+EIA L
Sbjct: 61 AIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMVVLEKKVNMHMKAVEERDFEIALL 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT+T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 GPAQTHPSFNSSMERGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEP 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 ESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYINRWRALSLDCKDRLTE 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 LSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDMELSIANRGNNDLLVPEVRKEKKE 360
Query: 361 ------------------------------------------------------------ 420
Sbjct: 361 VKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEKRQDEGEKRRPTLKERQEKVYPFPDSD 420
Query: 421 ------------------------------------------------------------ 480
Sbjct: 421 LPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYCKYHRVISHPVEKCFVLKELILKLALD 480
Query: 481 ------------------------------SLIQFGSLEPVVIYSSPEVLQKNDIRAVHP 502
SLIQFGSLEPVVIYSSPE LQ ND RA P
Sbjct: 481 KKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSLEPVVIYSSPEDLQNNDFRADGP 540
BLAST of PI0003112 vs. NCBI nr
Match:
KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])
HSP 1 Score: 370.2 bits (949), Expect = 2.9e-98
Identity = 336/1095 (30.68%), Postives = 394/1095 (35.98%), Query Frame = 0
Query: 1 MTFKGNTSKALSNTEKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENS 60
MT +GNTSKALS+ KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKEN
Sbjct: 1 MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60
Query: 61 VIEEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASL 120
++EH S SERS+E++P PNIMSVMVTDVD EDRMAELEKKVNML+KAVEERD+EIA L
Sbjct: 61 AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120
Query: 121 RNHIESRDAAESSHTYTTKNKDKGKTILQES----------------------------- 180
+NHIESRDAAESSHT+T KN +KGK I+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180
Query: 181 ------------------------------------------------------------ 240
Sbjct: 181 GPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
Query: 301 ------------------------------------------------------------ 360
Sbjct: 301 PVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360
Query: 361 ------------------------------------------------------------ 420
Sbjct: 361 LSIANRGNNDLLVPEVRKEKKEVKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEKRQDE 420
Query: 421 ------------------------------------------------------------ 480
Sbjct: 421 GEKRRPTLKERQEKVYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYCKYHR 480
Query: 481 ----------------------------------------------------SLIQFGSL 502
SLIQFGSL
Sbjct: 481 VISHPVEKCFVLKELILKLALDKKIELELDDVAQTNHAAVIIQSDSRLSAIGSLIQFGSL 540
BLAST of PI0003112 vs. NCBI nr
Match:
KAA0046553.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 312.8 bits (800), Expect = 5.5e-81
Identity = 231/599 (38.56%), Postives = 289/599 (48.25%), Query Frame = 0
Query: 63 EEHGSSSERSSEKMPHPNIMSVMVTDVDMREDRMAELEKKVNMLLKAVEERDYEIASLRN 122
+ H + ER + P PN +D+ D++ E L++ E D +I
Sbjct: 160 KRHPTLKERQEKIYPFPN------SDLPDTLDQLLE-----KHLIQLPESLDKKI----- 219
Query: 123 HIESRDAAESSHTYTTKNKDKGKTILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPK 182
+E D +++H + + + SLIQFGSLEPVVIYSSPE LQ ND RA K
Sbjct: 220 ELELDDVTQTNHAAVIIQSNSRLSAI--GSLIQFGSLEPVVIYSSPEDLQNNDFRADGLK 279
Query: 183 EEGKHVENADEGWTLVTRRKKQKQNYSKKESCLYREYKR--------------------- 242
EE K V+N +EGWTLVTRRKK KQ++S+KES YR Y
Sbjct: 280 EEEKQVDNVEEGWTLVTRRKKHKQSFSQKESGSYRTYMSKGKSQRRNTRKNLRKFLPIIE 339
Query: 243 --------------KNFFPENFPFDIVSCHAVSTTEDDASPSNSPEVNTTGDDTSPSKSA 302
K+FFP+NFP +IVSCH STTE+DA P N +
Sbjct: 340 KSEGLSRPRRPIILKDFFPKNFPMEIVSCHTTSTTEEDAFPLN---------------AM 399
Query: 303 EATTKLEELPSMDINDLLSLPREIKDTIIEILKNDDVSTIPASQTKA------------- 362
+ T + E+L S+ INDLL+L RE+KDTIIEILKNDDVST S TKA
Sbjct: 400 KETPRPEDLLSLGINDLLTLSREVKDTIIEILKNDDVSTTVTSPTKACDSCCMSISFSDE 459
Query: 363 ------------------------------------------------------------ 422
Sbjct: 460 DLLLGSKLHNRPLYVSGYVREQRLNQILIDNGSAVNILPKSTMNQLGISVEELSNSKLLI 519
Query: 423 ---------------------------------------------------FPVTKGTYK 482
PVTKGT+K
Sbjct: 520 QGFNQGAQRAIGTGIWKVDADSRPFTKAESHFADAKFYTKSEDVSEIISTEVPVTKGTFK 579
Query: 483 PEQGTITTKKSKELNVLKGRENDKIATQTKSEVPTKESIAIPQEKASKPPVLRYIPLSRR 502
EQ IT+KK+ + + L ++N ++ T+TK P E IA Q++ S PPVLRYIPLSRR
Sbjct: 580 NEQEMITSKKTNKGDALNSQQNGELTTETKLRAPEAEKIATLQKEVSNPPVLRYIPLSRR 639
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UJR2 | 2.6e-108 | 33.99 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... | [more] |
A0A5D3D1E5 | 1.2e-102 | 32.29 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402... | [more] |
A0A5D3BIH8 | 2.8e-99 | 31.13 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TZU9 | 1.4e-98 | 30.68 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... | [more] |
A0A5A7TSN4 | 2.7e-81 | 38.56 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |
KAA0053731.1 | 5.3e-108 | 33.99 | uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa] | [more] |
TYK18071.1 | 2.5e-102 | 32.29 | uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa] | [more] |
TYJ98225.1 | 5.9e-99 | 31.13 | uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa] | [more] |
KAA0047477.1 | 2.9e-98 | 30.68 | uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa] | [more] |
KAA0046553.1 | 5.5e-81 | 38.56 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |