PI0003086 (gene) Melon (PI 482460) v1

Overview


Name	PI0003086
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWIM-type domain-containing protein
Location	chr09: 9542836 .. 9543104 (+)
RNA-Seq Expression	PI0003086
Synteny	PI0003086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCTACTTATTGTCCAACTTCAAGCGTTGTTATGACGGTCGATTCCATCCAATACAACATCCAGACTATTGGCTAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGTGAACCCGGTCGATCCAGAACTACTAGGATCCATAACGAAATGGATTGGAAGGAGTCTCGTCCATCAATTAGATGCACGATTTGTAAAACAGAAGGACATAACAGACGTACTTGTCCTGAACGTGCTTCTTCTTCAAGACATTAA

mRNA sequence

ATGAATGCTACTTATTACTATTGGCTAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGTGAACCCGGTCGATCCAGAACTACTAGGATCCATAACGAAATGGATTGGAAGGAGTCTCGTCCATCAATTAGATGCACGATTTGTAAAACAGAAGGACATAACAGACGTACTTGTCCTGAACGTGCTTCTTCTTCAAGACATTAA

Coding sequence (CDS)

ATGAATGCTACTTATTACTATTGGCTAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGTGAACCCGGTCGATCCAGAACTACTAGGATCCATAACGAAATGGATTGGAAGGAGTCTCGTCCATCAATTAGATGCACGATTTGTAAAACAGAAGGACATAACAGACGTACTTGTCCTGAACGTGCTTCTTCTTCAAGACATTAA

Protein sequence

MNATYYYWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERASSSRH

Homology

[Close]

BLAST of PI0003086 vs. ExPASy TrEMBL
Match: A0A0A0KT57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MNATYYYWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRR 60
          MNAT+YYWLE+SFTEVRPNA+LL EPGR RTTRI NEMDWKES  S+RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPERA-SSSRH 72
          TCP+RA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]

BLAST of PI0003086 vs. ExPASy TrEMBL
Match: A0A5D3BS92 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00230 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW ELSFTEVRPNA+LL  PGR RTTRIHNEMDWKES  S+RCTICK EGHNRRTCP+RA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0003086 vs. ExPASy TrEMBL
Match: A0A5A7TN56 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00290 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW ELSFTEVRPNA+LL  PGR RTTRIHNEMDWKES  S+RCTICK EGHNRRTCP+RA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0003086 vs. ExPASy TrEMBL
Match: A0A5A7VDU8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00030 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.7e-22
Identity = 54/66 (81.82%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW ELSFTEVRPNANLL  P R RTTRIHNEMDWKES  S+RCTICK EGHNRR CP+RA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 260 SSSSRH 265

[Close]

BLAST of PI0003086 vs. ExPASy TrEMBL
Match: A0A5A7SW50 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001280 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW ELSFTE+RPNA+LL  PGR RTTRI NEMDWKES  S+RCTICK EGHNRRTCP+RA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 225 SSSSRH 230

[Close]

BLAST of PI0003086 vs. NCBI nr
Match: KGN51592.1 (hypothetical protein Csa_008873 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 5.1e-25
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MNATYYYWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRR 60
          MNAT+YYWLE+SFTEVRPNA+LL EPGR RTTRI NEMDWKES  S+RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPERA-SSSRH 72
          TCP+RA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]

BLAST of PI0003086 vs. NCBI nr
Match: XP_031737534.1 (uncharacterized protein LOC116402427 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW E+SFTEVRPNA+LL  PGR RTTRI NEMDWKES  SIRCTICK EGHNRRTCPERA
Sbjct: 569 YWPEISFTEVRPNADLLKGPGRPRTTRIQNEMDWKESSQSIRCTICKVEGHNRRTCPERA 628

Query: 67  SSSRH 72
           SSSRH
Sbjct: 629 SSSRH 633

[Close]

BLAST of PI0003086 vs. NCBI nr
Match: KAA0044308.1 (uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW ELSFTEVRPNA+LL  PGR RTTRIHNEMDWKES  S+RCTICK EGHNRRTCP+RA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0003086 vs. NCBI nr
Match: TYK02543.1 (uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW ELSFTEVRPNA+LL  PGR RTTRIHNEMDWKES  S+RCTICK EGHNRRTCP+RA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0003086 vs. NCBI nr
Match: KAA0063901.1 (hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK15904.1 hypothetical protein E5676_scaffold94G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 54/66 (81.82%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 7   YWLELSFTEVRPNANLLSEPGRSRTTRIHNEMDWKESRPSIRCTICKTEGHNRRTCPERA 66
           YW ELSFTEVRPNANLL  P R RTTRIHNEMDWKES  S+RCTICK EGHNRR CP+RA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 260 SSSSRH 265

The following BLAST results are available for this feature:

BLAST of PI0003086 vs.


Match Name	E-value	Identity	Description

BLAST of PI0003086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT57	2.5e-25	80.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1	[more]
A0A5D3BS92	1.2e-22	83.33	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TN56	1.2e-22	83.33	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7VDU8	9.7e-22	81.82	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7SW50	1.7e-21	80.30	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of PI0003086 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51592.1	5.1e-25	80.56	hypothetical protein Csa_008873 [Cucumis sativus]	[more]
XP_031737534.1	2.8e-23	84.62	uncharacterized protein LOC116402427 [Cucumis sativus]	[more]
KAA0044308.1	2.4e-22	83.33	uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa]	[more]
TYK02543.1	2.4e-22	83.33	uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa]	[more]
KAA0063901.1	2.0e-21	81.82	hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK1590...	[more]

BLAST of PI0003086 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 36..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0003086.1	PI0003086.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding