PI0002936 (gene) Melon (PI 482460) v1

Overview
NamePI0002936
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRas-related protein Rab-1A
Locationchr02: 14226636 .. 14228388 (-)
RNA-Seq ExpressionPI0002936
SyntenyPI0002936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTTCCCAATTTCATCTTCTCCCACAAATTCCTCCGCATTCCGATGGCAACTCGCCGGCAAAATTAGCGTCGTGGGGAATTCTCTGTGACTCCATCGATCTCCACCGCTTATCTGCCATGACGCCTGAATAGTAAGCGCGAATTGGTTGCTTCTGATTATGTTTTTCGATTTTAATTCACTTTTCAGAACTTTCGTGTTTTTGTTTGTTTAGAATTAGCCTGGATCTGGCGTAGTTGCTTATTTTTAATTTCACCTTCTTCTTCTTAGTTTTTGTTTTAATCGTCCGGTATGCCTGTTTATATATTATTTGTGGCGATTTTTGGGTATAGATCCTTGTGATTTGGAATCAGATCCACGCGATTTGATGGATTTCTGTCATCGGTGCTAAATTGCGTCTGTTTCTTTAAAGATACAATACTTGATCGTTGAACAAATTTCCGTCATAAATTCCATAGTTCCTGGAATAGGATAGTTAGGTGTGATGTTTTGTAAATTTTGCTGAAATTGATACAGGTCAAAACTTAATTATCTTCTGTATCTCTTTTACTTTCTACAACCAGCGGCTGTTTTGTTTGTTTCTCTGGCATAGGTCCTTGTCATCGACAAAGGGAAGGCGATGAATAATTTGTTTGAAGTTGAATATTGAAATATTTAGTGAGCCGGCATCACCTGCTTCCTTCTTGTTTCAAATTTTCAATTAATATATTTGCTTGAGATACGCTTTAGATGATTATATTATATTTATGAGAATGCCATGTAATATTTCGATAATGTTATCTATCATTGAACTTCATATTTATCTTACCTCTAAGCAACAGTTATTTCTTTCGTGCAGTGATAATTTGTTTAAGCTCTTGCTTATTGGAGATATATTCTGGTGTGGAAAATCATGTCTCCTTCTGAGGTTTGCAGTAACTGACCTATGCTATGATCTACCACTGATTCACAGTTTTTGGTTCTGAATTATGCTGTCAAATTCACAAGTATCAATTAATTTCAATATCTAATTTTGATTCGCTCTCACCAGCGGATCTACTTACGTGCCCCTCGAATTATTTGTTTTTGTATTTTAATATGGGCAATGCTTAGGTGCATCCCGGGATGCACCTATCTACATGCTTCCCATCTCTCTACCACACAAAAACAAGATTAAAACTTATTTTTAAAAATAGTACTTTTTAATTTTATTTTTGTGTGGTGGAGAGATAAGGAAGCACGTAAATGGGTGCATCTGGGATGCACCTAAGTTTTTTTCTTTTAATATTAATTCTGAAGTATCATTTTACGATAAATATATATATTATATAATGCGTTATTATTTAAACCAAAGTTAGGTGGTAGAGTAGTGATGCATTCCTGCTCTCTCAACTATCAGGTTGTGGTGATATATAGATTATATATAGATTTTAAAAAGAGGGAAAAAAACCTAACACATATTTAAGAAAAAATGCAGCAAAGTTTCAATCACTCCTCTCTCAACAATATTCTATAAAAAATGTATTATTCTTTTTTTTATGTAATTTTTAAATTTGCATGTACATATATATATTTATTTTATTTTATTTCAGAATTTAATACTACAAGATAAAAAAAATTCCGTTCATCGTTAGAATATATACGTATCATGTCATTCACCAATAAGTTCAAATTCCTCTTAGTCTTTTTAGTTTTCATACTTTTCAATCTATGTTGATAAATCATAATACTTATATTGTTTAATACTAATTTCGTAGAGTAAACATATGA

mRNA sequence

ATGCAAATTTCCCAATTTCATCTTCTCCCACAAATTCCTCCGCATTCCGATGGCAACTCGCCGGCAAAATTAGCGTCGTGGGGAATTCTCTGTGACTCCATCGATCTCCACCGCTTATCTGCCATGACGCCTGAATATGATAATTTGTTTAAGCTCTTGCTTATTGGAGATATATTCTGGTGTGGAAAATCATGTCTCCTTCTGAGAGTAAACATATGA

Coding sequence (CDS)

ATGCAAATTTCCCAATTTCATCTTCTCCCACAAATTCCTCCGCATTCCGATGGCAACTCGCCGGCAAAATTAGCGTCGTGGGGAATTCTCTGTGACTCCATCGATCTCCACCGCTTATCTGCCATGACGCCTGAATATGATAATTTGTTTAAGCTCTTGCTTATTGGAGATATATTCTGGTGTGGAAAATCATGTCTCCTTCTGAGAGTAAACATATGA

Protein sequence

MQISQFHLLPQIPPHSDGNSPAKLASWGILCDSIDLHRLSAMTPEYDNLFKLLLIGDIFWCGKSCLLLRVNI
Homology
[Close]
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match: P62822 (Ras-related protein Rab-1A OS=Canis lupus familiaris OX=9615 GN=RAB1A PE=1 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 6.9e-04
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 39 LSAMTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          +S+M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MSSMNPEYDYLFKLLLIGD-SGVGKSCLLLR 30

[Close]
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match: P62820 (Ras-related protein Rab-1A OS=Homo sapiens OX=9606 GN=RAB1A PE=1 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 6.9e-04
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 39 LSAMTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          +S+M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MSSMNPEYDYLFKLLLIGD-SGVGKSCLLLR 30

[Close]
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match: P62821 (Ras-related protein Rab-1A OS=Mus musculus OX=10090 GN=Rab1A PE=1 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 6.9e-04
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 39 LSAMTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          +S+M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MSSMNPEYDYLFKLLLIGD-SGVGKSCLLLR 30

[Close]
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match: Q52NJ2 (Ras-related protein Rab-1A OS=Sus scrofa OX=9823 GN=RAB1A PE=2 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 6.9e-04
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 39 LSAMTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          +S+M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MSSMNPEYDYLFKLLLIGD-SGVGKSCLLLR 30

[Close]
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match: Q6NYB7 (Ras-related protein Rab-1A OS=Rattus norvegicus OX=10116 GN=Rab1A PE=1 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 6.9e-04
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 39 LSAMTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          +S+M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MSSMNPEYDYLFKLLLIGD-SGVGKSCLLLR 30

[Close]
BLAST of PI0002936 vs. TAIR 10
Match: AT1G02130.1 (RAS 5 )

HSP 1 Score: 41.6 bits (96), Expect = 3.2e-04
Identity = 22/28 (78.57%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 42 MTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MNPEYDYLFKLLLIGD-SGVGKSCLLLR 27

[Close]
BLAST of PI0002936 vs. TAIR 10
Match: AT4G17530.1 (RAB GTPase homolog 1C )

HSP 1 Score: 41.6 bits (96), Expect = 3.2e-04
Identity = 22/28 (78.57%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 42 MTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MNPEYDYLFKLLLIGD-SGVGKSCLLLR 27

[Close]
BLAST of PI0002936 vs. TAIR 10
Match: AT5G47200.1 (RAB GTPase homolog 1A )

HSP 1 Score: 41.6 bits (96), Expect = 3.2e-04
Identity = 22/28 (78.57%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 42 MTPEYDNLFKLLLIGDIFWCGKSCLLLR 70
          M PEYD LFKLLLIGD    GKSCLLLR
Sbjct: 1  MNPEYDYLFKLLLIGD-SGVGKSCLLLR 27

The following BLAST results are available for this feature:
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P628226.9e-0474.19Ras-related protein Rab-1A OS=Canis lupus familiaris OX=9615 GN=RAB1A PE=1 SV=3[more]
P628206.9e-0474.19Ras-related protein Rab-1A OS=Homo sapiens OX=9606 GN=RAB1A PE=1 SV=3[more]
P628216.9e-0474.19Ras-related protein Rab-1A OS=Mus musculus OX=10090 GN=Rab1A PE=1 SV=3[more]
Q52NJ26.9e-0474.19Ras-related protein Rab-1A OS=Sus scrofa OX=9823 GN=RAB1A PE=2 SV=3[more]
Q6NYB76.9e-0474.19Ras-related protein Rab-1A OS=Rattus norvegicus OX=10116 GN=Rab1A PE=1 SV=3[more]
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of PI0002936 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of PI0002936 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G02130.13.2e-0478.57RAS 5 [more]
AT4G17530.13.2e-0478.57RAB GTPase homolog 1C [more]
AT5G47200.13.2e-0478.57RAB GTPase homolog 1A [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0002936.1PI0002936.1mRNA