Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCTTCAAGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCAGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAATTACAACAGATGATGGCGAAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAGCTTATCAGGCAATTGCAGAAATGAGGGGGTCATCCTGTAATGGGTTTGGGTGGAATGAAGAATATCAATGCATCATTGCAGAACGGGACTTGTTTAATAGTTGGGTCAAGGTACAATTTTCATAATGTGAATTTTATATACTTTTGAAATCACAACCATCAACTAATCTGTCTGTTTCATGTTTGTACAAAGTCATCCTGGGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACGATTTGTCGTATGTGTTCGGTAGAGGTTGGGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACAGTGTTCCACTTGATGATCTACATGATGAAGACATCCCGACAATGTATAGCCAAGGAGTGGATATGTCCCCAGATGACATGGTAGGAACATGTGCAGGTCGATAAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCTAACATAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTACGAATGATCAATTGAAGGCAATTGCTGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTTGAATTGCATGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGAGATAGAGTAAAGCTTATGCGAATATTATTCCGTAGTGTTGATGACACACAGAGATTCCTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAGTATTCTCTTGGAAGAAAATGTTTGACCCGTTTCCGATTTTATAACTTTGTATGTAAATTATGTGAACTTGTTATCTATTAGTTTGTATAGTCCTATGGTTAATTATGAATGTCATGGAAAATTTATATTTCACTAAATACATATTGAAGATTTGTTTCTTTGTGTTGTTTTCTTATTTTCTAAAATTCGTCCACGATTTATACGGATTATCTCTAACATAATTTAAAAAACGATCACCTAAACGAATGAGGAAATTACTTTATGGAAGTTATAGTTCAATTTTGATAAGACTATTTTCTTAGGAAAATATCTATCTTAATTATTAATAATAATTGCAAATACTTATCAATATTGTATTTTTGTATAGGAAATAACACAAAGCCCCTTCACAAACCCTTGTGCACAAAAGCAAGCTAAAACAAGCTTCTTGCGGCCAAAAACCGTGAAATACAAATTCAAGGGCAAAATAGTAATTCTCCTGGAAGTATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATCGCAGACTGCCGACTTCGCGAGGCAAATGCTTCACAACCTGA
mRNA sequence
ATGGCAAGTTCTTCAAGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCAGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAATTACAACAGATGATGGCGAAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAGCTTATCAGGCAATTGCAGAAATGAGGGGGTCATCCTGTAATGGGTTTGGGTGGAATGAAGAATATCAATGCATCATTGCAGAACGGGACTTGTTTAATAGTTGGGTCAAGGACTTTTACACAAATCATTTCCATATTATGACGATTTGTCGTATGTGTTCGGTAGAGGTTGGGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACAGTCGATAAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGCAATTGCTGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTTGAATTGCATGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGAGATAGAGTAAAGCTTATGCGAATATTATTCCGTAGTGTTGATGACACACAGAGATTCCTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAGTATTCTCTTGGAAGAAAATGAAATAACACAAAGCCCCTTCACAAACCCTTGTGCACAAAAGCAAGCTAAAACAAGCTTCTTGCGGCCAAAAACCGTGAAATACAAATTCAAGGGCAAAATAGTAATTCTCCTGGAAGTATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATCGCAGACTGCCGACTTCGCGAGGCAAATGCTTCACAACCTGA
Coding sequence (CDS)
ATGGCAAGTTCTTCAAGAGCACCCAAACACACATGGACTAAAGAGGAAGAAGCGAAGTTGGTTGAGTGTTTGGTGGAATTGGTTTCATCTGGCAGGTGGAGGTCAGATAATGGGACATTTCGACCTGGATATTTAGCACAATTACAACAGATGATGGCGAAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAGCTTATCAGGCAATTGCAGAAATGAGGGGGTCATCCTGTAATGGGTTTGGGTGGAATGAAGAATATCAATGCATCATTGCAGAACGGGACTTGTTTAATAGTTGGGTCAAGGACTTTTACACAAATCATTTCCATATTATGACGATTTGTCGTATGTGTTCGGTAGAGGTTGGGCAACAGGAGCACGTGCGGAGACCTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTTAATGACAGTCGATAAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGGGCAATTGCTGATTGGCCAAAAGAGAAGCGTGCAACAGAGGTTGAATTGCATGCTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGAGATAGAGTAAAGCTTATGCGAATATTATTCCGTAGTGTTGATGACACACAGAGATTCCTGTCGGTCCCAACGAAACTTAAATTGGAGTATTGCAGTATTCTCTTGGAAGAAAATGAAATAACACAAAGCCCCTTCACAAACCCTTGTGCACAAAAGCAAGCTAAAACAAGCTTCTTGCGGCCAAAAACCGTGAAATACAAATTCAAGGGCAAAATAGTAATTCTCCTGGAAGTATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCTCATCGCAGACTGCCGACTTCGCGAGGCAAATGCTTCACAACCTGA
Protein sequence
MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTNIQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKDFYTNHFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTVLMTVDKVKDEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEENEITQSPFTNPCAQKQAKTSFLRPKTVKYKFKGKIVILLEVFKNLLRGKTTSERVAHRRLPTSRGKCFTT
Homology
BLAST of PI0002563 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 157/313 (50.16%), Postives = 186/313 (59.42%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
MAS SRAPKHTWTKEEE K VECLVELVSSG WRSDNGTF+PGYLAQLQ+MMA+KLP TN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKD------ 120
IQ S TIDC VKSLKK Y AIAEMRG SC+GFGWNEE+QCIIAERDLF+SW+K
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 --------------------------------------------------------FYTN 180
Y+
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 HFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTV---------LMTVDKVKDEIVQVGV 240
H M+ M + GQ R C +V TV+ ++ +++ G
Sbjct: 181 GVH-MSPDEMFGIRAGQASERRN--------CSSVSKRKRGSERYETVEVIR-SVMEFGN 240
Query: 241 RGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVP 243
AIADWPKEKRA EVE+ A+VVKQL DIP+LRS+DR KLM+ILFRS++ + FLS+P
Sbjct: 241 EQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIP 300
BLAST of PI0002563 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 157/313 (50.16%), Postives = 186/313 (59.42%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
MAS SRAPKHTWTKEEE K VECLVELVSSG WRSDNGTF+PGYLAQLQ+MMA+KLP TN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKD------ 120
IQ S TIDC VKSLKK Y AIAEMRG SC+GFGWNEE+QCIIAERDLF+SW+K
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 --------------------------------------------------------FYTN 180
Y+
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 HFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTV---------LMTVDKVKDEIVQVGV 240
H M+ M + GQ R C +V TV+ ++ +++ G
Sbjct: 181 GVH-MSPDEMFGIRAGQASERRN--------CSSVSKRKRGSERYETVEVIR-SVMEFGN 240
Query: 241 RGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVP 243
AIADWPKEKRA EVE+ A+VVKQL DIP+LRS+DR KLM+ILFRS++ + FLS+P
Sbjct: 241 EQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIP 300
BLAST of PI0002563 vs. ExPASy TrEMBL
Match:
A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 2.3e-54
Identity = 130/263 (49.43%), Postives = 158/263 (60.08%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
MASSSRA KH WTKEEEAKLVECLVELVS+G WRSDNGTFR GYL QLQ+MMA+KLPDTN
Sbjct: 1 MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60
Query: 61 IQGSPTIDCRVKSLKKA--------YQAIAEMRGS-----------SCNGFGWNEEYQCI 120
IQGSPTIDCR K Y ++ + G+ + G + +
Sbjct: 61 IQGSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDG 120
Query: 121 IAERDLFNSWVKDFYTNHFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTVLMTVDKVK 180
+ D N + Y+ H M++ + + GQ R + + +V
Sbjct: 121 VPLGDSHNQDILTIYSQGVH-MSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVI 180
Query: 181 DEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDD 240
+ G I DWPKEKRATEVEL EVVKQL DIP+LRS+DR KLM+ILFRSV+
Sbjct: 181 SSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEA 240
Query: 241 TQRFLSVPTKLKLEYCSILLEEN 245
+ FLS+PTKLKLEYC+ILLE N
Sbjct: 241 IEGFLSIPTKLKLEYCNILLENN 262
BLAST of PI0002563 vs. ExPASy TrEMBL
Match:
A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)
HSP 1 Score: 214.2 bits (544), Expect = 8.0e-52
Identity = 117/278 (42.09%), Postives = 161/278 (57.91%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
M SS R PKH+WTKEEEA LVECLVELV++G WR DNGTFRPGYL QL++MM K+ D N
Sbjct: 55 MTSSLRLPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCN 114
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKDF----- 120
I SP D R+K +K+ + A+AEMRG +C+GFGWN+E +CI+AE+++FN W+K F
Sbjct: 115 IHASPN-DSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFNDWIKSFADVGS 174
Query: 121 ----------------------YTNHFHIMTICRMCSVEVGQQEH------VRRPLLTWD 180
Y ++ + M + +EH +R
Sbjct: 175 NDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHS 234
Query: 181 LMCQTVLMTVDKVKDEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRD 240
++ T+ + ++E + IA+WP +R E EVV+QL+ IPEL D
Sbjct: 235 ADSGDIIRTLIEYENEQL-------NHIAEWPALQRQDASETRQEVVRQLEAIPELTLMD 294
Query: 241 RVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEENE 246
R +LMRIL R+VDD + FL VP +K YCSI+L+EN+
Sbjct: 295 RCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQENQ 324
BLAST of PI0002563 vs. ExPASy TrEMBL
Match:
A0A5A7U216 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001370 PE=4 SV=1)
HSP 1 Score: 211.1 bits (536), Expect = 6.8e-51
Identity = 121/280 (43.21%), Postives = 160/280 (57.14%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
M SSSR PKHTWTKEEE LVECLVELV++G WRSDNGTFRPGYL QL +MMA K+P N
Sbjct: 1 MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSW----VKDFY 120
I S TID R+K +K+ + A+AEMRG +C+GFGWN+E +CIIAE+++F+ W K
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLL 120
Query: 121 TNHF-HIMTICRMCS------------VEVGQQEHVRRPLLTWDLMCQT----------- 180
F H + + ++G + D + T
Sbjct: 121 NKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGLN 180
Query: 181 ----VLMTVDKVKDEIVQVGVR-GN---GAIADWPKEKRATEVELHAEVVKQLDDIPELR 240
LM + +IV+ V GN IA+WP +R + E+V+QL+ IPEL
Sbjct: 181 MSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELT 240
Query: 241 SRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEEN 245
DR +LMRI+ R+VDD + FL VP + YCSI+L+EN
Sbjct: 241 LMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQEN 279
BLAST of PI0002563 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 276.2 bits (705), Expect = 3.6e-70
Identity = 157/313 (50.16%), Postives = 186/313 (59.42%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
MAS SRAPKHTWTKEEE K VECLVELVSSG WRSDNGTF+PGYLAQLQ+MMA+KLP TN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKD------ 120
IQ S TIDC VKSLKK Y AIAEMRG SC+GFGWNEE+QCIIAERDLF+SW+K
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 --------------------------------------------------------FYTN 180
Y+
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 HFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTV---------LMTVDKVKDEIVQVGV 240
H M+ M + GQ R C +V TV+ ++ +++ G
Sbjct: 181 GVH-MSPDEMFGIRAGQASERRN--------CSSVSKRKRGSERYETVEVIR-SVMEFGN 240
Query: 241 RGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVP 243
AIADWPKEKRA EVE+ A+VVKQL DIP+LRS+DR KLM+ILFRS++ + FLS+P
Sbjct: 241 EQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIP 300
BLAST of PI0002563 vs. NCBI nr
Match:
KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 4.7e-54
Identity = 130/263 (49.43%), Postives = 158/263 (60.08%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
MASSSRA KH WTKEEEAKLVECLVELVS+G WRSDNGTFR GYL QLQ+MMA+KLPDTN
Sbjct: 1 MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60
Query: 61 IQGSPTIDCRVKSLKKA--------YQAIAEMRGS-----------SCNGFGWNEEYQCI 120
IQGSPTIDCR K Y ++ + G+ + G + +
Sbjct: 61 IQGSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDG 120
Query: 121 IAERDLFNSWVKDFYTNHFHIMTICRMCSVEVGQQEHVRRPLLTWDLMCQTVLMTVDKVK 180
+ D N + Y+ H M++ + + GQ R + + +V
Sbjct: 121 VPLGDSHNQDILTIYSQGVH-MSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVI 180
Query: 181 DEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDD 240
+ G I DWPKEKRATEVEL EVVKQL DIP+LRS+DR KLM+ILFRSV+
Sbjct: 181 SSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEA 240
Query: 241 TQRFLSVPTKLKLEYCSILLEEN 245
+ FLS+PTKLKLEYC+ILLE N
Sbjct: 241 IEGFLSIPTKLKLEYCNILLENN 262
BLAST of PI0002563 vs. NCBI nr
Match:
KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 214.2 bits (544), Expect = 1.7e-51
Identity = 117/278 (42.09%), Postives = 161/278 (57.91%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
M SS R PKH+WTKEEEA LVECLVELV++G WR DNGTFRPGYL QL++MM K+ D N
Sbjct: 55 MTSSLRLPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCN 114
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWVKDF----- 120
I SP D R+K +K+ + A+AEMRG +C+GFGWN+E +CI+AE+++FN W+K F
Sbjct: 115 IHASPN-DSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFNDWIKSFADVGS 174
Query: 121 ----------------------YTNHFHIMTICRMCSVEVGQQEH------VRRPLLTWD 180
Y ++ + M + +EH +R
Sbjct: 175 NDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHS 234
Query: 181 LMCQTVLMTVDKVKDEIVQVGVRGNGAIADWPKEKRATEVELHAEVVKQLDDIPELRSRD 240
++ T+ + ++E + IA+WP +R E EVV+QL+ IPEL D
Sbjct: 235 ADSGDIIRTLIEYENEQL-------NHIAEWPALQRQDASETRQEVVRQLEAIPELTLMD 294
Query: 241 RVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEENE 246
R +LMRIL R+VDD + FL VP +K YCSI+L+EN+
Sbjct: 295 RCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQENQ 324
BLAST of PI0002563 vs. NCBI nr
Match:
KAA0047509.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 211.1 bits (536), Expect = 1.4e-50
Identity = 121/280 (43.21%), Postives = 160/280 (57.14%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
M SSSR PKHTWTKEEE LVECLVELV++G WRSDNGTFRPGYL QL +MMA K+P N
Sbjct: 1 MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSW----VKDFY 120
I S TID R+K +K+ + A+AEMRG +C+GFGWN+E +CIIAE+++F+ W K
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLL 120
Query: 121 TNHF-HIMTICRMCS------------VEVGQQEHVRRPLLTWDLMCQT----------- 180
F H + + ++G + D + T
Sbjct: 121 NKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGLN 180
Query: 181 ----VLMTVDKVKDEIVQVGVR-GN---GAIADWPKEKRATEVELHAEVVKQLDDIPELR 240
LM + +IV+ V GN IA+WP +R + E+V+QL+ IPEL
Sbjct: 181 MSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELT 240
Query: 241 SRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLEEN 245
DR +LMRI+ R+VDD + FL VP + YCSI+L+EN
Sbjct: 241 LMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQEN 279
BLAST of PI0002563 vs. NCBI nr
Match:
KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 205.3 bits (521), Expect = 7.7e-49
Identity = 122/303 (40.26%), Postives = 168/303 (55.45%), Query Frame = 0
Query: 1 MASSSRAPKHTWTKEEEAKLVECLVELVSSGRWRSDNGTFRPGYLAQLQQMMAKKLPDTN 60
M SSSR PKHTWTKEEEA LVECLVELV++G WRSDNGTFRPGYL QL +MMA K+P +N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDCRVKSLKKAYQAIAEMRGSSCNGFGWNEEYQCIIAERDLFNSWV-------- 120
I S TID R+K +K+ + A+AEMRG +C+GFGWN+E +CI+AE+++F+ W
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 -KDF--YTNHFHIMTICRMCS------VEVGQQEHVRRPLLTWDLMCQT---------VL 180
K F Y ++ R ++G + + D M T +
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGLN 180
Query: 181 MTVDKVKD----------------------------EIVQVGVR-GN---GAIADWPKEK 240
M+ D + + +IV+ + GN IA+WP +
Sbjct: 181 MSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQ 240
Query: 241 RATEVELHAEVVKQLDDIPELRSRDRVKLMRILFRSVDDTQRFLSVPTKLKLEYCSILLE 246
R + E+V+ L+ IPEL DR +LMRIL R+VDD + FL VP +K YCS++L+
Sbjct: 241 RQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLILQ 300
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U0H7 | 1.7e-70 | 50.16 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 1.7e-70 | 50.16 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5D3BZU3 | 2.3e-54 | 49.43 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TDD6 | 8.0e-52 | 42.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U216 | 6.8e-51 | 43.21 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_008441954.1 | 3.6e-70 | 50.16 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
KAA0031678.1 | 4.7e-54 | 49.43 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... | [more] |
KAA0041444.1 | 1.7e-51 | 42.09 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... | [more] |
KAA0047509.1 | 1.4e-50 | 43.21 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0035621.1 | 7.7e-49 | 40.26 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... | [more] |
Match Name | E-value | Identity | Description | |