PI0002518 (gene) Melon (PI 482460) v1

Overview


Name	PI0002518
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 14272366 .. 14273430 (-)
RNA-Seq Expression	PI0002518
Synteny	PI0002518

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTCACCAATGTAGATGGGCTGATTGTCTTTCACCATGGCTGCCTGGACAAAGGAGCGGTAGAAGGCCTAAGTTTTTGAATATCTAAGTATTAAACCACCAATTCACCCAAAAGCTTAAGCTCGTGGTTGAAGGCAAATTTAATTATATATCACTAACACTCCCCCTTACTTGTGGGCTTGAAATATTTGAAAGGCTCAACAAGTGGAAATCGATTTTAATTGGAAGAAACAACAATGCAGGGGCTTGAACACAAGTCCTCCCTGAACCACCTTCTTTAATACCATATTAAACCACCAATTCACCCAAAAACTTAAAACTCGTGGTTGAAAGCAAATTTAATTATATATCACTAGTACTGAGGACACAGACTTTTCGATTGACTCTCTTCTTTTGGAATTCAACAGCTTCTGCTGTCTCCCTAAGGATGGTAAGGATTGTGTTGAGCAAGTTGTTGCAGTTCCTGGTTCTCACCCAGCGTGTTGTTCTCCACCTAAGGCTGGCAACTGGAAGTTGAATGTGATTGCAGTTCGGCCAAAGGAGAAAAGTTGAGGTGGGCTGGGGTGAATCGTTCATGATGGTCCTGTGGTTCTTGGAGGTTGTAAGTTCCCTAACAAGAATTGGGGGCATAAGCCTCCTCGAAGCTGTGGCTTTGGTGGAGGGATTGAATGCAATCGAATTGGAGTGGTCCGGGCTTAGCCCCCGCTTGAAGTCGAGTCCGATGCTTTAGAGGTTATTCATCTCCTCAACAGAGATGAGTTTTGTTTCTGAATTAGGATTGTTCATGAACGATATTCTTTTTATTGAGAATTCTGTTAATGTATCTTTGCGTCACATCTCTAGAGAGGAGAACAAGTTTGTCTATATTACTGCAACTTTTGCATTCTATTGTAGTTGTTCTTTGATTTGGAAAGCACAGCATTTTCTCCTTTATCCTTGATGGGATTCCTAGGGAGCAGCTGGTTCTAATGACATCCTCCTAGGGAGTAGCTGGTTCTGTTTCCCCCTTAGGAAGGGAGCTATTAGGGATATAGGAGTTTTGACACCTTGGAAAAGGTAG

mRNA sequence

ATGTCTACTCACCAATGTAGATGGGCTGATTGTCTTTCACCATGGCTGCCTGGACAAAGGAGCGGTAGAAGGCCTAACTTCTGCTGTCTCCCTAAGGATGGTAAGGATTGTGTTGAGCAAGTTGTTGCAGTTCCTGGTTCTCACCCAGCGTGTTGTTCTCCACCTAAGGCTGGCAACTGGAAGTTGAATGTGATTGCAGTTCGGCCAAAGGAGAAAACTGTGGCTTTGGTGGAGGGATTGAATGCAATCGAATTGGAGTGGTCCGGGCTTAGCCCCCGCTTGAAGTCGACTGGTTCTAATGACATCCTCCTAGGGAGTAGCTGGTTCTGTTTCCCCCTTAGGAAGGGAGCTATTAGGGATATAGGAGTTTTGACACCTTGGAAAAGGTAG

Coding sequence (CDS)

ATGTCTACTCACCAATGTAGATGGGCTGATTGTCTTTCACCATGGCTGCCTGGACAAAGGAGCGGTAGAAGGCCTAACTTCTGCTGTCTCCCTAAGGATGGTAAGGATTGTGTTGAGCAAGTTGTTGCAGTTCCTGGTTCTCACCCAGCGTGTTGTTCTCCACCTAAGGCTGGCAACTGGAAGTTGAATGTGATTGCAGTTCGGCCAAAGGAGAAAACTGTGGCTTTGGTGGAGGGATTGAATGCAATCGAATTGGAGTGGTCCGGGCTTAGCCCCCGCTTGAAGTCGACTGGTTCTAATGACATCCTCCTAGGGAGTAGCTGGTTCTGTTTCCCCCTTAGGAAGGGAGCTATTAGGGATATAGGAGTTTTGACACCTTGGAAAAGGTAG

Protein sequence

MSTHQCRWADCLSPWLPGQRSGRRPNFCCLPKDGKDCVEQVVAVPGSHPACCSPPKAGNWKLNVIAVRPKEKTVALVEGLNAIELEWSGLSPRLKSTGSNDILLGSSWFCFPLRKGAIRDIGVLTPWKR

Homology

[Close]

BLAST of PI0002518 vs. ExPASy TrEMBL
Match: A0A0A0KDR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G155530 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.9e-45
Identity = 98/152 (64.47%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 1   MSTHQCRWADCLSPWLPGQRSGRRPNFCCLPKDGKDCVEQVVAVPGSHPACCSPPKAGNW 60
           MSTHQCRWADCLSPWL G +      FC LPKD    VEQ VAVPGSHPACCSPPKAGNW
Sbjct: 1   MSTHQCRWADCLSPWLRGDKE----LFCHLPKDATGRVEQAVAVPGSHPACCSPPKAGNW 60

Query: 61  KLNVIAVRPKEKT---------------VALVEGLNAIELEWSGLSPRLK--------ST 120
           KLNVIAV PKEK+               VALVEGLNAIELEWSGL+P  +        + 
Sbjct: 61  KLNVIAVWPKEKSCKFTNKNWSISLLKAVALVEGLNAIELEWSGLNPPFEVEFDALEGAP 120

Query: 121 GSNDILLGSSWFCFPLRKGAIRDIGVLTPWKR 130
            SN ILL S+WFCF LRKGA  DI VLTPWKR
Sbjct: 121 DSNGILLESTWFCFHLRKGATTDIRVLTPWKR 148

[Close]

BLAST of PI0002518 vs. ExPASy TrEMBL
Match: A0A5D3BYP7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00910 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 26 NFCCLPKDGKDCVEQVVAVPGSHPACCSPPKAGNWKLNVIAVRPKEKT 74
          +FC LPKDG D VEQVVAVPGSHPACCSPPKAGNWK NVIAV PKEK+
Sbjct: 47 SFCHLPKDGTDRVEQVVAVPGSHPACCSPPKAGNWKSNVIAVWPKEKS 94

[Close]

BLAST of PI0002518 vs. NCBI nr
Match: TYK04893.1 (hypothetical protein E5676_scaffold143G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 26 NFCCLPKDGKDCVEQVVAVPGSHPACCSPPKAGNWKLNVIAVRPKEKT 74
          +FC LPKDG D VEQVVAVPGSHPACCSPPKAGNWK NVIAV PKEK+
Sbjct: 47 SFCHLPKDGTDRVEQVVAVPGSHPACCSPPKAGNWKSNVIAVWPKEKS 94

The following BLAST results are available for this feature:

BLAST of PI0002518 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002518 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDR6	3.9e-45	64.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G155530 PE=4 SV=1	[more]
A0A5D3BYP7	2.5e-15	85.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0002518 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04893.1	5.1e-15	85.42	hypothetical protein E5676_scaffold143G00910 [Cucumis melo var. makuwa]	[more]

BLAST of PI0002518 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002518.1	PI0002518.1	mRNA