PI0002500 (gene) Melon (PI 482460) v1

Overview


Name	PI0002500
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Eukaryotic translation initiation factor 4C
Location	chr01: 3722884 .. 3724421 (+)
RNA-Seq Expression	PI0002500
Synteny	PI0002500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACATTCTTAATTCTCAGATTACATAGCTTTCTTCTGCGAAATTGCTCGATTGAATTCTCTGTGCCAGAAAGGTACTCTTCGATTGTTCCTATCCTTCTAATTCATAACCATATTTGTGCATGTCAAGATTATGTTCAACCCTTCTTTTGTTCGGCTCTTTTCTTCTTGTGATGAAGATTATGATAGCTTGATTAGTGTGAATATTTGGATTTTCGTTTTGTCTCATCATTTTTTTTCTTTTTTGATTTCCTGGTCTTTAATTGTGTTCATCGCATGTAAAATGAATTTTGATCATGTAAAAAGGTTGCAGTAACTAGCTAGGGCTGTAGGTCACCAATGACTAGACCATCTCCAATTATTATGATATAAGAATTAGCATTTAAAAGTGTAAAATTAAACATCATATTAGTTTCAGAGTGATTTTGAATATCAAAAGAAAATGATTTTAGCCTTTTCATAATCAGCCAAAACATGCAATTATTAGAGAGCTGAAAAAAAATTATCTGTTTTACTAGTTAAATCCCACATGATCATATTTTTTGATTGATGGGTGGTTTTGTTTTGTGAATACATGCTCATACCCTAGTGTAGTCATGATTACTCATAAGTGTTGAAACTCCTCTTTTTCTCCTTTTTGGAAAATCTATTTTGATAATTCATGATTAATTCAGATTTTGCTAATGATATTTTTTACAAACACTCCTTTGGCTTTTACATTCTAGCTTAGTTTATGAATCTATGTTTCTGGTGGCTAATTTTCCATTATATTGATAGTATAATCTGCAACCATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGGGGTAAGAACGAGGCAGACGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTTCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGAACTAAACGTCTTTGTCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTAGTTGGTCTTCGTGAATATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACGGTGAGTTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGATGACGACGACGAAGGTGGTGCTGATGCATATATTGAGTTTGAGGATGAAGACATTGATAAGATCTAGATGTTAGTCCTTTATTTTGAATAATCTCTTAGTGAATGATAACTATATACTAAAGTGGGGTGAGGTTGTATAACCGAATTCCGTTTCATAGTAGTCTGAAAATGCAGATGGGAATCGGTTTAATTCCATGTAACATCTGTTCATTTTAAATACTGAATGATTGCATATGCCCCTTCTGGCCAATAATACTTCTATCGAAATACAACTTCACCCAGTTGTTGAGATGGTTTTGTACCATTCTTCTTTTTAAATGTAAGATGTGATATTTTCTCTTATTTTACGAGTAAATGAATAGACATTCTACACTAAA

mRNA sequence

GAACATTCTTAATTCTCAGATTACATAGCTTTCTTCTGCGAAATTGCTCGATTGAATTCTCTGTGCCAGAAAGTATAATCTGCAACCATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGGGGTAAGAACGAGGCAGACGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTTCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGAACTAAACGTCTTTGTCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTAGTTGGTCTTCGTGAATATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACGGTGAGTTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGATGACGACGACGAAGGTGGTGCTGATGCATATATTGAGTTTGAGGATGAAGACATTGATAAGATCTAGATGTTAGTCCTTTATTTTGAATAATCTCTTAGTGAATGATAACTATATACTAAAGTGGGGTGAGGTTGTATAACCGAATTCCGTTTCATAGTAGTCTGAAAATGCAGATGGGAATCGGTTTAATTCCATGTAACATCTGTTCATTTTAAATACTGAATGATTGCATATGCCCCTTCTGGCCAATAATACTTCTATCGAAATACAACTTCACCCAGTTGTTGAGATGGTTTTGTACCATTCTTCTTTTTAAATGTAAGATGTGATATTTTCTCTTATTTTACGAGTAAATGAATAGACATTCTACACTAAA

Coding sequence (CDS)

ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGGGGTAAGAACGAGGCAGACGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTTCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGAACTAAACGTCTTTGTCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTAGTTGGTCTTCGTGAATATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACGGTGAGTTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGATGACGACGACGAAGGTGGTGCTGATGCATATATTGAGTTTGAGGATGAAGACATTGATAAGATCTAG

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGADAYIEFEDEDIDKI

Homology

[Close]

BLAST of PI0002500 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 258.1 bits (658), Expect = 6.1e-68
Identity = 130/145 (89.66%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILK MPDEARLLKAYGELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
            G  D++   A+ YIEFEDEDIDKI
Sbjct: 121 AGGLDEEMDTANDYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 245.0 bits (624), Expect = 5.3e-64
Identity = 122/145 (84.14%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLR+YQDDKADVILKYM DEARLLKAYGELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVD 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
               ++ EG +D YI+FEDEDIDKI
Sbjct: 121 VDGPEEGEGDSD-YIQFEDEDIDKI 144

[Close]

BLAST of PI0002500 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of PI0002500 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of PI0002500 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of PI0002500 vs. ExPASy TrEMBL
Match: A0A5A7UZV0 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00180 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. ExPASy TrEMBL
Match: A0A0A0K1Y5 (Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. ExPASy TrEMBL
Match: A0A1S3C1S5 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495650 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. ExPASy TrEMBL
Match: A0A6J1JL52 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111486190 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of PI0002500 vs. ExPASy TrEMBL
Match: A0A6J1C384 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111007531 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. NCBI nr
Match: XP_004144524.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis melo] >XP_038888593.1 eukaryotic translation initiation factor 1A-like [Benincasa hispida] >KAA0059115.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa] >KGN43463.1 hypothetical protein Csa_020194 [Cucumis sativus] >TYK21620.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. NCBI nr
Match: XP_022135622.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. NCBI nr
Match: XP_022930658.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988995.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023529812.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >KAG6589133.1 hypothetical protein SDJN03_17698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GGMDDDDEGG DAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of PI0002500 vs. NCBI nr
Match: XP_031490608.1 (eukaryotic translation initiation factor 1A [Nymphaea colorata])

HSP 1 Score: 284.6 bits (727), Expect = 4.6e-73
Identity = 140/145 (96.55%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GG+DD+DEGGAD YIEFEDEDIDKI
Sbjct: 121 GGLDDEDEGGADDYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. NCBI nr
Match: KAF3782739.1 (Eukaryotic translation initiation factor 1A [Nymphaea thermarum])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 139/145 (95.86%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQV RMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVQRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           GG+DD+DEGGAD YIEFEDEDIDKI
Sbjct: 121 GGLDDEDEGGADDYIEFEDEDIDKI 145

[Close]

BLAST of PI0002500 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-72
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLR+YQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           G ++DDD+   D Y+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of PI0002500 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 264.6 bits (675), Expect = 4.6e-71
Identity = 130/145 (89.66%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           G +DDDD+   + YIEFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of PI0002500 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 264.6 bits (675), Expect = 4.6e-71
Identity = 130/145 (89.66%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGADAYIEFEDEDIDKI 146
           G +DDDD+   + YIEFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of PI0002500 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 246.1 bits (627), Expect = 1.7e-65
Identity = 119/128 (92.97%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYM DEARLLKAYGELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDE 129
           G +DDDD+
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of PI0002500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	6.1e-68	89.66	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	5.3e-64	84.14	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	1.4e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	1.4e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	1.4e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of PI0002500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZV0	7.0e-75	98.62	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K1Y5	7.0e-75	98.62	Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G...	[more]
A0A1S3C1S5	7.0e-75	98.62	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A6J1JL52	1.6e-74	97.93	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1C384	1.6e-74	98.62	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of PI0002500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144524.1	1.4e-74	98.62	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PR...	[more]
XP_022135622.1	3.2e-74	98.62	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]
XP_022930658.1	3.2e-74	97.93	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988...	[more]
XP_031490608.1	4.6e-73	96.55	eukaryotic translation initiation factor 1A [Nymphaea colorata]	[more]
KAF3782739.1	2.3e-72	95.86	Eukaryotic translation initiation factor 1A [Nymphaea thermarum]	[more]

BLAST of PI0002500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	1.1e-72	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	4.6e-71	89.66	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	4.6e-71	89.66	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	1.7e-65	92.97	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 e-value: 1.0E-48 score: 177.8
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 14..110 e-value: 8.0E-35 score: 116.8
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..145
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18.272436
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 33..109 e-value: 3.12252E-41 score: 130.336
None	No IPR available	GENE3D	2.40.50.140		coord: 2..145 e-value: 9.7E-58 score: 195.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 1..145
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 e-value: 6.0E-22 score: 77.2
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31.733702
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002500.1	PI0002500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding