PI0002159 (gene) Melon (PI 482460) v1

Overview


Name	PI0002159
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr04: 27612898 .. 27613992 (-)
RNA-Seq Expression	PI0002159
Synteny	PI0002159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCCGCCCTACAGCTGAGGGAGGGCCTTACTCGCGATGAACCGACCTTCATCACCCCTCCGCGAAAACCGCTGGGGATTCAGGAAAAAGTAACCTCGAAAGACGTTCAGCGTGCCGTAGAGAAATATAACGATAAGGGGCTTGATAGTCTGCCCAAGACTCAATCGCTGGCAGAAAATGCTTATAGTCCGACACCCCCCGAGTCGATAGAACTTTGGAAACAGTTGGAAGAGTTGTTGGGCGTAGGGTCCATTATGCCTGCGGAAGCTCCATGTAGGGCCTCAGTCCCCTTCCAAAAGAAGAGTTCACAAGCTCACAGTTCCACAAGGGAGTGGAAACGGACAGCAGACGTCACTCGAGCTTATTCAGAGAAGACCTCCGAGCGGATGAAGAAGCGGGCAGGGAAGAAACGTCGCCCCCTCGAGTTTCAGGCGGGAGACCGAGTCCTCATCAAAAGGCGATTAGGACAAGGCTGGTTTCGAGGACGTACGGACCAACACCTCGTTAGGGAATACGAGGGCCCTGTTGAAGTCCTCAAGAAGGTGGGAAAAGCATCCTACCGAGTGGCGTTGCCCACGTGGATGAAAATGCATCCAATAATTCACGTGAGTAACTTAAAGCCCTACCACCAAGACCCCGGTGACACCCGATGCAACGTTGTCAGCCGGCCAAACATCGGTCTGAACAAAAGGGAAGAAGACCGAGATGTTGAAGCGATCCTTGCCGACCGGGTAAGGAAGGATAGAAGACCCACGAGGAGGATCCACGAATTCCTGGTCAAGTGGAAGGATCTCCCCGTGGAAAGGACCAGTTGGGAACGTCTCGAAGACCTAGAAGCGTGGAAGCAGAAGATCGAAGAGTTCCAGCTTTGCCAGTCGACGGGGACGTCAACTGTTTAAGTGGGGGAGAATGTCACGGTCATGCTTGTCCAGGGCGGTGTTTGCCTGTGGCCGCATGTTCGAACACCTTCACCCCACCTTGAGTTATGTTTTTCCTTTAGTTTCCATGTCACTTTGCTTTTACTTTCCGTGTCGCTTTATGCTTTCATTTACTTTCCGTGTCGCATTGCTTTTACCTTCTATGTCGCTTAG

mRNA sequence

ATGATTTCCGCCCTACAGCTGAGGGAGGGCCTTACTCGCGATGAACCGACCTTCATCACCCCTCCGCGAAAACCGCTGGGGATTCAGGAAAAAGTAACCTCGAAAGACGTTCAGCGTGCCGTAGAGAAATATAACGATAAGGGGCTTGATAAGAAGACCTCCGAGCGGATGAAGAAGCGGGCAGGGAAGAAACGTCGCCCCCTCGAGTTTCAGGCGGGAGACCGAGTCCTCATCAAAAGGCGATTAGGACAAGGCTGGTTTCGAGGACGTACGGACCAACACCTCGTTAGGGAATACGAGGGCCCTGTTGAAGTCCTCAAGAAGGTGGGAAAAGCATCCTACCGAGTGGCGTTGCCCACGTGGATGAAAATGCATCCAATAATTCACGTGAGTAACTTAAAGCCCTACCACCAAGACCCCGGTGACACCCGATGCAACGTTGTCAGCCGGCCAAACATCGGTCTGAACAAAAGGGAAGAAGACCGAGATGTTGAAGCGATCCTTGCCGACCGGGGCGGTGTTTGCCTGTGGCCGCATGTTCGAACACCTTCACCCCACCTTGAGTTATGTTTTTCCTTTAGTTTCCATGTCACTTTGCTTTTACTTTCCGTGTCGCTTTATGCTTTCATTTACTTTCCGTGTCGCATTGCTTTTACCTTCTATGTCGCTTAG

Coding sequence (CDS)

ATGATTTCCGCCCTACAGCTGAGGGAGGGCCTTACTCGCGATGAACCGACCTTCATCACCCCTCCGCGAAAACCGCTGGGGATTCAGGAAAAAGTAACCTCGAAAGACGTTCAGCGTGCCGTAGAGAAATATAACGATAAGGGGCTTGATAAGAAGACCTCCGAGCGGATGAAGAAGCGGGCAGGGAAGAAACGTCGCCCCCTCGAGTTTCAGGCGGGAGACCGAGTCCTCATCAAAAGGCGATTAGGACAAGGCTGGTTTCGAGGACGTACGGACCAACACCTCGTTAGGGAATACGAGGGCCCTGTTGAAGTCCTCAAGAAGGTGGGAAAAGCATCCTACCGAGTGGCGTTGCCCACGTGGATGAAAATGCATCCAATAATTCACGTGAGTAACTTAAAGCCCTACCACCAAGACCCCGGTGACACCCGATGCAACGTTGTCAGCCGGCCAAACATCGGTCTGAACAAAAGGGAAGAAGACCGAGATGTTGAAGCGATCCTTGCCGACCGGGGCGGTGTTTGCCTGTGGCCGCATGTTCGAACACCTTCACCCCACCTTGAGTTATGTTTTTCCTTTAGTTTCCATGTCACTTTGCTTTTACTTTCCGTGTCGCTTTATGCTTTCATTTACTTTCCGTGTCGCATTGCTTTTACCTTCTATGTCGCTTAG

Protein sequence

MISALQLREGLTRDEPTFITPPRKPLGIQEKVTSKDVQRAVEKYNDKGLDKKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVGKASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILADRGGVCLWPHVRTPSPHLELCFSFSFHVTLLLLSVSLYAFIYFPCRIAFTFYVA

Homology

[Close]

BLAST of PI0002159 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.6e-38
Identity = 87/123 (70.73%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1413 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1472

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1473 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQK-EDKDVEEILAE 1532

Query: 171  RGG 174
            R G
Sbjct: 1533 RVG 1534

[Close]

BLAST of PI0002159 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1413 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1472

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1473 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 1532

Query: 171  R 172
            R
Sbjct: 1533 R 1532

[Close]

BLAST of PI0002159 vs. ExPASy TrEMBL
Match: A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51  KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
           +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 85  EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 144

Query: 111 KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
             SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 145 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 204

Query: 171 R 172
           R
Sbjct: 205 R 204

[Close]

BLAST of PI0002159 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1413 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1472

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1473 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 1532

Query: 171  R 172
            R
Sbjct: 1533 R 1532

[Close]

BLAST of PI0002159 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1413 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1472

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1473 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 1532

Query: 171  R 172
            R
Sbjct: 1533 R 1532

[Close]

BLAST of PI0002159 vs. NCBI nr
Match: KAA0052211.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK01778.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 7.4e-38
Identity = 87/123 (70.73%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1413 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1472

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1473 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQK-EDKDVEEILAE 1532

Query: 171  RGG 174
            R G
Sbjct: 1533 RVG 1534

[Close]

BLAST of PI0002159 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 9.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1409 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1468

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1469 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 1528

Query: 171  R 172
            R
Sbjct: 1529 R 1528

[Close]

BLAST of PI0002159 vs. NCBI nr
Match: TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 9.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51  KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
           +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 85  EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 144

Query: 111 KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
             SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 145 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 204

Query: 171 R 172
           R
Sbjct: 205 R 204

[Close]

BLAST of PI0002159 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 9.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1413 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1472

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1473 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 1532

Query: 171  R 172
            R
Sbjct: 1533 R 1532

[Close]

BLAST of PI0002159 vs. NCBI nr
Match: TYK28713.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 9.7e-38
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 51   KKTSERMKKRAGKKRRPLEFQAGDRVLIKRRLGQGWFRGRTDQHLVREYEGPVEVLKKVG 110
            +K S+RMKK A KKRRPLEF+AGD+VLIK R  Q  FRGR DQ LVR+YEGPVEVLKKVG
Sbjct: 1413 EKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVG 1472

Query: 111  KASYRVALPTWMKMHPIIHVSNLKPYHQDPGDTRCNVVSRPNIGLNKREEDRDVEAILAD 170
              SYRVALPTWMK++P+IHVSNLKPYHQD  D + NVV+RP I L+++ ED+DVE ILA+
Sbjct: 1473 NTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQK-EDKDVEEILAE 1532

Query: 171  R 172
            R
Sbjct: 1533 R 1532

The following BLAST results are available for this feature:

BLAST of PI0002159 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRZ6	3.6e-38	70.73	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3C4R1	4.7e-38	71.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DBE0	4.7e-38	71.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A5A7UXR6	4.7e-38	71.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	4.7e-38	71.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of PI0002159 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052211.1	7.4e-38	70.73	reverse transcriptase [Cucumis melo var. makuwa] >TYK01778.1 reverse transcripta...	[more]
KAA0067557.1	9.7e-38	71.07	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19637.1	9.7e-38	71.07	reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta...	[more]
KAA0037220.1	9.7e-38	71.07	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
TYK28713.1	9.7e-38	71.07	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0002159 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002159.1	PI0002159.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding