PI0002135 (gene) Melon (PI 482460) v1

Overview


Name	PI0002135
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr12: 10138726 .. 10139543 (-)
RNA-Seq Expression	PI0002135
Synteny	PI0002135

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCGATGAACAATCTTCTCAAATCTATGGAAATATCGCAAGTCAATGCCGCAGGAGACTCTGTGCAAGCGGCAAATCAAATTGATGATATGGGATGTGTGGGATGTGGCAGTCCTCATAATACTGACGCATGCCCACTCAATACAAAAACTGTCGCGTTCGTAAGGAACGGCCCTTTCTCCAACACTTACAACCCTGGTTGGAGGAACCATCCTAACTTTAGATGAGGAGGAACGAGTCAACAAAATCAAGGGCGACGTGGTGGTCAAAGTGACCATCGCAGGGAAGCATCTGGCTCCTACGCGAGGTACCACAACAACAGACCACAACACTCCCAACATCAACAGTAACCCACCACCACTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGCGAATACATGTAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATCTGGAAGTGCAATTAGAGCAGTAGCCAGCGACTTCTCCAGAAGGCCACAAGGATCCCTCCCAAGTAATACAGAAACGCTAAGCCAGGCGGGGGGATCTGGAAAAGAGAAGTATCACACGGTGACACTACGAAGCGAAAGGAATTTGACCATCCGCGATCCTGATACTGAACGTAGAAACCCCACTTCTCATTCTACTGCGCAGATTGGCAGCTCAAGTAACATTTCTAATCCTGTACATTTCTCTTTAACTAACAATATTTCTTCCTCGCAGAATAAAGACGTGCCAAGCAAGGGCATGGAGAGCACGGACAACGTGATCAATGGAGTGAAGGGTCTCAACAGGCGACGAGCTTGA

mRNA sequence

ATGACTGCGATGAACAATCTTCTCAAATCTATGGAAATATCGCAAGTCAATGCCGCAGGAGACTCTGTGCAAGCGGCAAATCAAATTGATGATATGGGATGTGTGGGATGTGGCAGTCCTCATAATACTGACGCATGCCCACTCAATACAAAAACTGTCGCGTTCCCAAGCTTCATCAATTCGCAATCTGGAAGTGCAATTAGAGCAGTAGCCAGCGACTTCTCCAGAAGGCCACAAGGATCCCTCCCAAGTAATACAGAAACGCTAAGCCAGGCGGGGGGATCTGGAAAAGAGAAGTATCACACGGTGACACTACGAAGCGAAAGGAATTTGACCATCCGCGATCCTGATACTGAACGTAGAAACCCCACTTCTCATTCTACTGCGCAGATTGGCAGCTCAAGTAACATTTCTAATCCTGTACATTTCTCTTTAACTAACAATATTTCTTCCTCGCAGAATAAAGACGTGCCAAGCAAGGGCATGGAGAGCACGGACAACGTGATCAATGGAGTGAAGGGTCTCAACAGGCGACGAGCTTGA

Coding sequence (CDS)

ATGACTGCGATGAACAATCTTCTCAAATCTATGGAAATATCGCAAGTCAATGCCGCAGGAGACTCTGTGCAAGCGGCAAATCAAATTGATGATATGGGATGTGTGGGATGTGGCAGTCCTCATAATACTGACGCATGCCCACTCAATACAAAAACTGTCGCGTTCCCAAGCTTCATCAATTCGCAATCTGGAAGTGCAATTAGAGCAGTAGCCAGCGACTTCTCCAGAAGGCCACAAGGATCCCTCCCAAGTAATACAGAAACGCTAAGCCAGGCGGGGGGATCTGGAAAAGAGAAGTATCACACGGTGACACTACGAAGCGAAAGGAATTTGACCATCCGCGATCCTGATACTGAACGTAGAAACCCCACTTCTCATTCTACTGCGCAGATTGGCAGCTCAAGTAACATTTCTAATCCTGTACATTTCTCTTTAACTAACAATATTTCTTCCTCGCAGAATAAAGACGTGCCAAGCAAGGGCATGGAGAGCACGGACAACGTGATCAATGGAGTGAAGGGTCTCAACAGGCGACGAGCTTGA

Protein sequence

MTAMNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQSGSAIRAVASDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMESTDNVINGVKGLNRRRA

Homology

[Close]

BLAST of PI0002135 vs. ExPASy TrEMBL
Match: A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.4e-26
Identity = 81/168 (48.21%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 4   MNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQS 63
           MN LL+S+ + QVN  G+ +QA  Q +D                         + + SQ+
Sbjct: 1   MNKLLRSLALPQVNGTGNFIQAMQQWND-------------------------ALLQSQA 60

Query: 64  GS------AIRAVASDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDPD 123
            S       +  + S+ SRRP+GSLPSNTET +Q GGSGKEK   VTLRS RNLTIR+P 
Sbjct: 61  SSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIREPK 120

Query: 124 TERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST 166
            ERRN TS ST +IGS+SN SNP++ SLTNN SS QNK++P+K +EST
Sbjct: 121 FERRNSTSTSTTKIGSASNDSNPLNSSLTNNTSSLQNKNIPNKEVEST 143

[Close]

BLAST of PI0002135 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.4e-13
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 6   NLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAF---------- 65
           N+L+SM + QVN    SVQ   Q+++MGCVGC +PHNT+ACPLNT+ VA+          
Sbjct: 122 NILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDPTPIHI 181

Query: 66  -----PSFINSQSGS------AIRAVASDFSRRPQGSLPSNTETLSQ 92
                 + I+SQ+ S       +  + SDFSRRP+ S PSNTET +Q
Sbjct: 182 MWGGETTQISSQASSIKNMELQLGQLTSDFSRRPKRSFPSNTETPNQ 228

[Close]

BLAST of PI0002135 vs. ExPASy TrEMBL
Match: A0A5A7UDZ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00900 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-11
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 90  SQAGGSGKEKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNI 149
           +QAGGS KEKY  +TL+S RNLTIR+P++  +NPTS ST ++ +SS  S P++FSLTN+ 
Sbjct: 3   NQAGGSDKEKYQVMTLKSGRNLTIREPNSGCKNPTSTSTTKVDNSSKSSKPLNFSLTNDA 62

Query: 150 SSSQNKDVPSKGMEST 166
           SS Q  ++P+K ++ST
Sbjct: 63  SSLQYNNIPNKEVKST 78

[Close]

BLAST of PI0002135 vs. ExPASy TrEMBL
Match: A0A5D3DEN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00460 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-10
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 72  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTI--RDPDTERRNPTSHSTA 131
           SD   + +G LPSNTE  +Q GGS KEK   V L+S RN T     P+ E R+ TS  T 
Sbjct: 4   SDKVAKIEGILPSNTEMPNQVGGSDKEKCQVVILKSGRNFTFVNHKPNVEARS-TSTFTI 63

Query: 132 QIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST 166
           +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Sbjct: 64  EISNSSSASNPLNFPLTNNASSLQNKKVPNKEVENT 98

[Close]

BLAST of PI0002135 vs. ExPASy TrEMBL
Match: A0A5A7TCC3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00170 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 72  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDP--DTERRNPTSHSTA 131
           SD   +  G LPSNTE  +Q GGSGKEK   V L+S RN T  +   + E R+ TS  T 
Sbjct: 4   SDKVAKIDGILPSNTEMPNQVGGSGKEKCQVVILKSGRNFTFANHKLNVEARS-TSTFTI 63

Query: 132 QIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST 166
           +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Sbjct: 64  EISNSSSASNPLNFPLTNNASSLQNKKVPNKEVENT 98

[Close]

BLAST of PI0002135 vs. NCBI nr
Match: KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 81/168 (48.21%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 4   MNNLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAFPSFINSQS 63
           MN LL+S+ + QVN  G+ +QA  Q +D                         + + SQ+
Sbjct: 1   MNKLLRSLALPQVNGTGNFIQAMQQWND-------------------------ALLQSQA 60

Query: 64  GS------AIRAVASDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDPD 123
            S       +  + S+ SRRP+GSLPSNTET +Q GGSGKEK   VTLRS RNLTIR+P 
Sbjct: 61  SSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIREPK 120

Query: 124 TERRNPTSHSTAQIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST 166
            ERRN TS ST +IGS+SN SNP++ SLTNN SS QNK++P+K +EST
Sbjct: 121 FERRNSTSTSTTKIGSASNDSNPLNSSLTNNTSSLQNKNIPNKEVEST 143

[Close]

BLAST of PI0002135 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 6   NLLKSMEISQVNAAGDSVQAANQIDDMGCVGCGSPHNTDACPLNTKTVAF---------- 65
           N+L+SM + QVN    SVQ   Q+++MGCVGC +PHNT+ACPLNT+ VA+          
Sbjct: 122 NILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDPTPIHI 181

Query: 66  -----PSFINSQSGS------AIRAVASDFSRRPQGSLPSNTETLSQ 92
                 + I+SQ+ S       +  + SDFSRRP+ S PSNTET +Q
Sbjct: 182 MWGGETTQISSQASSIKNMELQLGQLTSDFSRRPKRSFPSNTETPNQ 228

[Close]

BLAST of PI0002135 vs. NCBI nr
Match: KAA0053420.1 (hypothetical protein E6C27_scaffold428G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-10
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 90  SQAGGSGKEKYHTVTLRSERNLTIRDPDTERRNPTSHSTAQIGSSSNISNPVHFSLTNNI 149
           +QAGGS KEKY  +TL+S RNLTIR+P++  +NPTS ST ++ +SS  S P++FSLTN+ 
Sbjct: 3   NQAGGSDKEKYQVMTLKSGRNLTIREPNSGCKNPTSTSTTKVDNSSKSSKPLNFSLTNDA 62

Query: 150 SSSQNKDVPSKGMEST 166
           SS Q  ++P+K ++ST
Sbjct: 63  SSLQYNNIPNKEVKST 78

[Close]

BLAST of PI0002135 vs. NCBI nr
Match: TYK21908.1 (hypothetical protein E5676_scaffold494G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 72  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTI--RDPDTERRNPTSHSTA 131
           SD   + +G LPSNTE  +Q GGS KEK   V L+S RN T     P+ E R+ TS  T 
Sbjct: 4   SDKVAKIEGILPSNTEMPNQVGGSDKEKCQVVILKSGRNFTFVNHKPNVEARS-TSTFTI 63

Query: 132 QIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST 166
           +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Sbjct: 64  EISNSSSASNPLNFPLTNNASSLQNKKVPNKEVENT 98

[Close]

BLAST of PI0002135 vs. NCBI nr
Match: KAA0041114.1 (hypothetical protein E6C27_scaffold128G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-09
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 72  SDFSRRPQGSLPSNTETLSQAGGSGKEKYHTVTLRSERNLTIRDP--DTERRNPTSHSTA 131
           SD   +  G LPSNTE  +Q GGSGKEK   V L+S RN T  +   + E R+ TS  T 
Sbjct: 4   SDKVAKIDGILPSNTEMPNQVGGSGKEKCQVVILKSGRNFTFANHKLNVEARS-TSTFTI 63

Query: 132 QIGSSSNISNPVHFSLTNNISSSQNKDVPSKGMEST 166
           +I +SS+ SNP++F LTNN SS QNK VP+K +E+T
Sbjct: 64  EISNSSSASNPLNFPLTNNASSLQNKKVPNKEVENT 98

The following BLAST results are available for this feature:

BLAST of PI0002135 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002135 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGS2	7.4e-26	48.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CC26	9.4e-13	44.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UDZ7	6.7e-11	53.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DEN2	5.7e-10	51.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TCC3	1.3e-09	51.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0002135 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041246.1	1.5e-25	48.21	uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0048713.1	1.9e-12	44.86	hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916...	[more]
KAA0053420.1	1.4e-10	53.95	hypothetical protein E6C27_scaffold428G00900 [Cucumis melo var. makuwa]	[more]
TYK21908.1	1.2e-09	51.04	hypothetical protein E5676_scaffold494G00460 [Cucumis melo var. makuwa]	[more]
KAA0041114.1	2.6e-09	51.04	hypothetical protein E6C27_scaffold128G00170 [Cucumis melo var. makuwa]	[more]

BLAST of PI0002135 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0002135.1	PI0002135.1	mRNA