Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCCGAGCCTAACGAGGACCAAAGGCCCCTCTGCATTGTAATTCCCCCAACCACTCAACCCTTCAAACTCAAACCTGGAGTAATCCATCTCTTACCTATATACAAGGGTAGTTCAGGAGAGGACCCCCATAAACACCTCAAAGACTTTCATATGGTTTGTGACTCAATGAGACTGCACGGTGTTTCAAAGGAACAACTTAACTTGAGAGCCTTTCCATTTTCTTTGACTGACACAGCCAAAAGATGGCTTTACTACCTAGAGCCAGGGTCCATCACCACTTGGGGAAGCCTTAAAAAGAAATTCCTAGAAAAATTCTTTCCTACTTCTAGAGCCAATAATATTAGGAAAGAAATCTATGGAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATACTGGGAAAGGTTTAAGGAGCTCTGCGCTAGTTTCCCCCATCACCATATTTCTGATCCATCACTAATACAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCATTGGCTGACAAAACCCCTACTGAGGCTAGAGAGCTCATTTCGAGGATGGCTGGAAATTCATTGAACTTTGGGAACAGAGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGGTTAATATGACTACTTTACTAACTTCCTTTGTTCAAGGTGGATCCGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGATAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCGAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTATTACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCTTGATCATGCCAACGTAAGTGTCATCTCACTTAGAAACGGTAAGATTCTGGAAACCCTTTCAAGTAAAGAAAAGGTAACTTCTATCCCCTATCCTTCTAGAAAATAA
mRNA sequence
ATGGGGCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCCGAGCCTAACGAGGACCAAAGGCCCCTCTGCATTGTAATTCCCCCAACCACTCAACCCTTCAAACTCAAACCTGGAGTAATCCATCTCTTACCTATATACAAGGGTAGTTCAGGAGAGGACCCCCATAAACACCTCAAAGACTTTCATATGGTTTGTGACTCAATGAGACTGCACGGTGTTTCAAAGGAACAACTTAACTTGAGAGCCTTTCCATTTTCTTTGACTGACACAGCCAAAAGATGGCTTTACTACCTAGAGCCAGGGTCCATCACCACTTGGGGAAGCCTTAAAAAGAAATTCCTAGAAAAATTCTTTCCTACTTCTAGAGCCAATAATATTAGGAAAGAAATCTATGGAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATACTGGGAAAGGTTTAAGGAGCTCTGCGCTAGTTTCCCCCATCACCATATTTCTGATCCATCACTAATACAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCATTGGCTGACAAAACCCCTACTGAGGCTAGAGAGCTCATTTCGAGGATGGCTGGAAATTCATTGAACTTTGGGAACAGAGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGGTTAATATGACTACTTTACTAACTTCCTTTGTTCAAGGTGGATCCGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGATAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCGAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTATTACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCTTGATCATGCCAACGTAAGTGTCATCTCACTTAGAAACGGTAAGATTCTGGAAACCCTTTCAAGTAAAGAAAAGGTAACTTCTATCCCCTATCCTTCTAGAAAATAA
Coding sequence (CDS)
ATGGGGCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCCGAGCCTAACGAGGACCAAAGGCCCCTCTGCATTGTAATTCCCCCAACCACTCAACCCTTCAAACTCAAACCTGGAGTAATCCATCTCTTACCTATATACAAGGGTAGTTCAGGAGAGGACCCCCATAAACACCTCAAAGACTTTCATATGGTTTGTGACTCAATGAGACTGCACGGTGTTTCAAAGGAACAACTTAACTTGAGAGCCTTTCCATTTTCTTTGACTGACACAGCCAAAAGATGGCTTTACTACCTAGAGCCAGGGTCCATCACCACTTGGGGAAGCCTTAAAAAGAAATTCCTAGAAAAATTCTTTCCTACTTCTAGAGCCAATAATATTAGGAAAGAAATCTATGGAATAAGGCAAGCTTTTGGGGAGTCCTTGTCTGAATACTGGGAAAGGTTTAAGGAGCTCTGCGCTAGTTTCCCCCATCACCATATTTCTGATCCATCACTAATACAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCATTGGCTGACAAAACCCCTACTGAGGCTAGAGAGCTCATTTCGAGGATGGCTGGAAATTCATTGAACTTTGGGAACAGAGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGGTTAATATGACTACTTTACTAACTTCCTTTGTTCAAGGTGGATCCGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAATGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGATAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCGAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTATTACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTAACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCTTGATCATGCCAACGTAAGTGTCATCTCACTTAGAAACGGTAAGATTCTGGAAACCCTTTCAAGTAAAGAAAAGGTAACTTCTATCCCCTATCCTTCTAGAAAATAA
Protein sequence
MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPTSRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLAQLDHANVSVISLRNGKILETLSSKEKVTSIPYPSRK
Homology
BLAST of PI0001882 vs. ExPASy TrEMBL
Match:
A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)
HSP 1 Score: 636.7 bits (1641), Expect = 6.3e-179
Identity = 314/394 (79.70%), Postives = 355/394 (90.10%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREKT+R+L E +EDQRPLCIVI TTQPF+LKP +IHLLPI+KG+SGEDPHKHLKD
Sbjct: 61 MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
FHMVCDSMR HG+S+EQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKFLEKFFP
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
SR NNIRKEIYGIRQAFGESL +YWE+FKELCA+FPHHHI PSLIQYFY GLL+ DRNT
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDAAAGGALA+K PTEARELISRMA NS FGNRASEL+NSLTKEVSELKSQM+NMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG +KV KC VCGLVGHPNDK P+++EE N+++KYDP+SNTYN GWRDNP LRWG
Sbjct: 301 TSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWG 360
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
NDNQ+ +QA ++S+NQ TNL+D++KALAT T+SFQ EMKQQM+ LT ISK++GKGKL A
Sbjct: 361 NDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPA 420
Query: 361 QLDHANVSVISLRNGKILETLSSKE-KVTSIPYP 394
Q +HANVSVISLR+GKIL+T S+KE KVTSIP P
Sbjct: 421 QPNHANVSVISLRSGKILDTPSTKEKKVTSIPLP 454
BLAST of PI0001882 vs. ExPASy TrEMBL
Match:
A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)
HSP 1 Score: 562.0 bits (1447), Expect = 2.0e-156
Identity = 286/400 (71.50%), Postives = 319/400 (79.75%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREK LREL+EPNED RPLCIVIPPTTQPF+LKPG+IHLLPI+KGSSGEDPHKHLKD
Sbjct: 1 MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
FHMVCDSMR + +S+EQLNLRAFPF LTD AK WLYYLEPGSITTWGSLKKKFLEKFFP
Sbjct: 61 FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
SRANNIRKEIYGIRQAFGESLS+YWERFKELCAS PH+HI DPSLIQYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDAA GGALADKTPTEAR+LISRM NS +FGNRASELDNSLTKEVSELKSQM+NMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGVCGLVGHPNDK P+++E+ N++R+YDPH
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPH----------------- 300
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
GTNLED++KALAT T+SFQ EMKQQM+ LT AISK++GKGKL A
Sbjct: 301 ----------------GTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 360
Query: 361 QLDHANVSVISLRNGKILETLSS-----KEKVTSIPYPSR 396
Q DHAN + + IL+ S + P+PSR
Sbjct: 361 QPDHANKRLKQTPHHLILKNDKSPLNDFTPYIPKPPFPSR 367
BLAST of PI0001882 vs. ExPASy TrEMBL
Match:
A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)
HSP 1 Score: 529.6 bits (1363), Expect = 1.1e-146
Identity = 260/324 (80.25%), Postives = 291/324 (89.81%), Query Frame = 0
Query: 68 MRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPTSRANNIR 127
MR HG+SKEQLNLRAFPFSLTD AKRWLYY+EPGSITTWGSLKKKFLEKFFP SRANNIR
Sbjct: 1 MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60
Query: 128 KEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAAAGG 187
KEIYGIRQAFGESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D AGG
Sbjct: 61 KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120
Query: 188 ALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLLTSFVQGG 247
ALADKTPTEARELISRM NS +FGNRASELDNSLTKEVSELKSQM+NMTTLLTSFVQG
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180
Query: 248 SVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPS 307
KV KCGVCGLVGHPNDK ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240
Query: 308 QATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLAQLDHANV 367
QA S+S+NQGTNLED++KAL T T+SFQ EMKQQM+ LT AISK++GKGKL AQ D+ANV
Sbjct: 241 QAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANV 300
Query: 368 SVISLRNGKILETLSSKEKVTSIP 392
S ISLR+GKIL+T ++KEK P
Sbjct: 301 SAISLRSGKILDTPTTKEKKKETP 324
BLAST of PI0001882 vs. ExPASy TrEMBL
Match:
A0A5A7ULC7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29G00020 PE=4 SV=1)
HSP 1 Score: 523.1 bits (1346), Expect = 1.0e-144
Identity = 267/377 (70.82%), Postives = 301/377 (79.84%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREKTL+EL +P+EDQRPLCIVIPPTTQPF+LK G+IHLLPI+KG
Sbjct: 1 MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLPIFKGK----------- 60
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
KRWLYYLEPGSITTWGSLKKKFLEKFFP
Sbjct: 61 -------------------------------KRWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
S+ANNIRKEIYGIRQAFGESLS YWERFKELCASFP HIS+PSLIQYFYSGLL+ D+NT
Sbjct: 121 SKANNIRKEIYGIRQAFGESLSRYWERFKELCASFPFLHISNPSLIQYFYSGLLSSDKNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDAAAGGALADKTP EA+ELISRMA NS +FGNRASEL NSLTKEVSE+KSQM+NMTTLL
Sbjct: 181 VDAAAGGALADKTPIEAQELISRMAENSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLL 240
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGV G VGHPNDK P+++E+ N+++KYDPH NTYN+GWRDNPNLRWG
Sbjct: 241 TSFVQGTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 300
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
NDNQ +QA +S+NQGTNLE ++KALAT T SFQ EMKQQ++ LT AISK++GKGKLLA
Sbjct: 301 NDNQTHTQAPPTSSNQGTNLEVIIKALATNTFSFQQEMKQQITQLTTAISKMDGKGKLLA 335
Query: 361 QLDHANVSVISLRNGKI 378
Q DHANVS ISLR+ I
Sbjct: 361 QPDHANVSAISLRSDAI 335
BLAST of PI0001882 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 514.6 bits (1324), Expect = 3.6e-142
Identity = 266/386 (68.91%), Postives = 299/386 (77.46%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREKTLREL+EP+EDQRPLCIVIPPTTQPF+LK G+IHLLPI+KG
Sbjct: 1 MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLPIFKG------------ 60
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
+P SITTWGSLKKKFLEKFF
Sbjct: 61 --------------------------------------KPSSITTWGSLKKKFLEKFFLA 120
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
SRANNIRKEIYGIRQAF ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHIFDPSLFQYFYSGLLSSDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDA AG ALADKTPTEA ELISRMA N +FGNRAS+L+N LTKEVSELKS+M+NMTTLL
Sbjct: 181 VDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLENYLTKEVSELKSKMLNMTTLL 240
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG KV KCGVCGLVGHPNDK P+++E+ N++R+YDPH NTYN GWRD PNLRWG
Sbjct: 241 TSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKPNLRWG 300
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
ND Q +QA S+S+NQGTNLED++KAL T T+SFQ EMKQQM+ LT AISK++GKGKL A
Sbjct: 301 NDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 336
Query: 361 QLDHANVSVISLRNGKILETLSSKEK 387
Q DHANVS ISLR+GKIL+T ++KEK
Sbjct: 361 QPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0001882 vs. NCBI nr
Match:
KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 636.7 bits (1641), Expect = 1.3e-178
Identity = 314/394 (79.70%), Postives = 355/394 (90.10%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREKT+R+L E +EDQRPLCIVI TTQPF+LKP +IHLLPI+KG+SGEDPHKHLKD
Sbjct: 61 MGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHLKD 120
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
FHMVCDSMR HG+S+EQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKFLEKFFP
Sbjct: 121 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPA 180
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
SR NNIRKEIYGIRQAFGESL +YWE+FKELCA+FPHHHI PSLIQYFY GLL+ DRNT
Sbjct: 181 SRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNT 240
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDAAAGGALA+K PTEARELISRMA NS FGNRASEL+NSLTKEVSELKSQM+NMTTLL
Sbjct: 241 VDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLL 300
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG +KV KC VCGLVGHPNDK P+++EE N+++KYDP+SNTYN GWRDNP LRWG
Sbjct: 301 TSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWG 360
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
NDNQ+ +QA ++S+NQ TNL+D++KALAT T+SFQ EMKQQM+ LT ISK++GKGKL A
Sbjct: 361 NDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPA 420
Query: 361 QLDHANVSVISLRNGKILETLSSKE-KVTSIPYP 394
Q +HANVSVISLR+GKIL+T S+KE KVTSIP P
Sbjct: 421 QPNHANVSVISLRSGKILDTPSTKEKKVTSIPLP 454
BLAST of PI0001882 vs. NCBI nr
Match:
KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])
HSP 1 Score: 562.0 bits (1447), Expect = 4.1e-156
Identity = 286/400 (71.50%), Postives = 319/400 (79.75%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREK LREL+EPNED RPLCIVIPPTTQPF+LKPG+IHLLPI+KGSSGEDPHKHLKD
Sbjct: 1 MGEVREKILRELAEPNEDHRPLCIVIPPTTQPFELKPGLIHLLPIFKGSSGEDPHKHLKD 60
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
FHMVCDSMR + +S+EQLNLRAFPF LTD AK WLYYLEPGSITTWGSLKKKFLEKFFP
Sbjct: 61 FHMVCDSMRPYSISEEQLNLRAFPFFLTDVAKIWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
SRANNIRKEIYGIRQAFGESLS+YWERFKELCAS PH+HI DPSLIQYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFGESLSKYWERFKELCASLPHYHIFDPSLIQYFYSGLLSFDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDAA GGALADKTPTEAR+LISRM NS +FGNRASELDNSLTKEVSELKSQM+NMTTLL
Sbjct: 181 VDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLL 240
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGVCGLVGHPNDK P+++E+ N++R+YDPH
Sbjct: 241 TSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPH----------------- 300
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
GTNLED++KALAT T+SFQ EMKQQM+ LT AISK++GKGKL A
Sbjct: 301 ----------------GTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 360
Query: 361 QLDHANVSVISLRNGKILETLSS-----KEKVTSIPYPSR 396
Q DHAN + + IL+ S + P+PSR
Sbjct: 361 QPDHANKRLKQTPHHLILKNDKSPLNDFTPYIPKPPFPSR 367
BLAST of PI0001882 vs. NCBI nr
Match:
KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 529.6 bits (1363), Expect = 2.3e-146
Identity = 260/324 (80.25%), Postives = 291/324 (89.81%), Query Frame = 0
Query: 68 MRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPTSRANNIR 127
MR HG+SKEQLNLRAFPFSLTD AKRWLYY+EPGSITTWGSLKKKFLEKFFP SRANNIR
Sbjct: 1 MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60
Query: 128 KEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNTVDAAAGG 187
KEIYGIRQAFGESLS+YW+R KELCASFPHHHISDPSLIQYF+SGLL+ DRNT+D AGG
Sbjct: 61 KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120
Query: 188 ALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLLTSFVQGG 247
ALADKTPTEARELISRM NS +FGNRASELDNSLTKEVSELKSQM+NMTTLLTSFVQG
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180
Query: 248 SVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPS 307
KV KCGVCGLVGHPNDK ++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240
Query: 308 QATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLAQLDHANV 367
QA S+S+NQGTNLED++KAL T T+SFQ EMKQQM+ LT AISK++GKGKL AQ D+ANV
Sbjct: 241 QAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANV 300
Query: 368 SVISLRNGKILETLSSKEKVTSIP 392
S ISLR+GKIL+T ++KEK P
Sbjct: 301 SAISLRSGKILDTPTTKEKKKETP 324
BLAST of PI0001882 vs. NCBI nr
Match:
KAA0056713.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 523.1 bits (1346), Expect = 2.1e-144
Identity = 267/377 (70.82%), Postives = 301/377 (79.84%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREKTL+EL +P+EDQRPLCIVIPPTTQPF+LK G+IHLLPI+KG
Sbjct: 1 MGKVREKTLKELVDPDEDQRPLCIVIPPTTQPFELKQGLIHLLPIFKGK----------- 60
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
KRWLYYLEPGSITTWGSLKKKFLEKFFP
Sbjct: 61 -------------------------------KRWLYYLEPGSITTWGSLKKKFLEKFFPA 120
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
S+ANNIRKEIYGIRQAFGESLS YWERFKELCASFP HIS+PSLIQYFYSGLL+ D+NT
Sbjct: 121 SKANNIRKEIYGIRQAFGESLSRYWERFKELCASFPFLHISNPSLIQYFYSGLLSSDKNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDAAAGGALADKTP EA+ELISRMA NS +FGNRASEL NSLTKEVSE+KSQM+NMTTLL
Sbjct: 181 VDAAAGGALADKTPIEAQELISRMAENSQSFGNRASELVNSLTKEVSEIKSQMLNMTTLL 240
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG +KV KCGV G VGHPNDK P+++E+ N+++KYDPH NTYN+GWRDNPNLRWG
Sbjct: 241 TSFVQGTPIKVTKCGVFGFVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 300
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
NDNQ +QA +S+NQGTNLE ++KALAT T SFQ EMKQQ++ LT AISK++GKGKLLA
Sbjct: 301 NDNQTHTQAPPTSSNQGTNLEVIIKALATNTFSFQQEMKQQITQLTTAISKMDGKGKLLA 335
Query: 361 QLDHANVSVISLRNGKI 378
Q DHANVS ISLR+ I
Sbjct: 361 QPDHANVSAISLRSDAI 335
BLAST of PI0001882 vs. NCBI nr
Match:
TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 514.6 bits (1324), Expect = 7.5e-142
Identity = 266/386 (68.91%), Postives = 299/386 (77.46%), Query Frame = 0
Query: 1 MGQVREKTLRELSEPNEDQRPLCIVIPPTTQPFKLKPGVIHLLPIYKGSSGEDPHKHLKD 60
MG+VREKTLREL+EP+EDQRPLCIVIPPTTQPF+LK G+IHLLPI+KG
Sbjct: 1 MGEVREKTLRELAEPDEDQRPLCIVIPPTTQPFELKSGLIHLLPIFKG------------ 60
Query: 61 FHMVCDSMRLHGVSKEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPT 120
+P SITTWGSLKKKFLEKFF
Sbjct: 61 --------------------------------------KPSSITTWGSLKKKFLEKFFLA 120
Query: 121 SRANNIRKEIYGIRQAFGESLSEYWERFKELCASFPHHHISDPSLIQYFYSGLLTMDRNT 180
SRANNIRKEIYGIRQAF ESLSEYWERFKELCASFPHHHI DPSL QYFYSGLL+ DRNT
Sbjct: 121 SRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHHHIFDPSLFQYFYSGLLSSDRNT 180
Query: 181 VDAAAGGALADKTPTEARELISRMAGNSLNFGNRASELDNSLTKEVSELKSQMVNMTTLL 240
VDA AG ALADKTPTEA ELISRMA N +FGNRAS+L+N LTKEVSELKS+M+NMTTLL
Sbjct: 181 VDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKLENYLTKEVSELKSKMLNMTTLL 240
Query: 241 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLMEEANVIRKYDPHSNTYNAGWRDNPNLRWG 300
TSFVQG KV KCGVCGLVGHPNDK P+++E+ N++R+YDPH NTYN GWRD PNLRWG
Sbjct: 241 TSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKPNLRWG 300
Query: 301 NDNQRPSQATSSSNNQGTNLEDLVKALATITISFQNEMKQQMSHLTNAISKLEGKGKLLA 360
ND Q +QA S+S+NQGTNLED++KAL T T+SFQ EMKQQM+ LT AISK++GKGKL A
Sbjct: 301 NDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 336
Query: 361 QLDHANVSVISLRNGKILETLSSKEK 387
Q DHANVS ISLR+GKIL+T ++KEK
Sbjct: 361 QPDHANVSAISLRSGKILDTPTTKEK 336
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SRF5 | 6.3e-179 | 79.70 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7USL5 | 2.0e-156 | 71.50 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7V0Q7 | 1.1e-146 | 80.25 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5A7ULC7 | 1.0e-144 | 70.82 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3CFE7 | 3.6e-142 | 68.91 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0031967.1 | 1.3e-178 | 79.70 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos... | [more] |
| KAA0058150.1 | 4.1e-156 | 71.50 | uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa] | [more] |
| KAA0061138.1 | 2.3e-146 | 80.25 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0056713.1 | 2.1e-144 | 70.82 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| TYK10613.1 | 7.5e-142 | 68.91 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
