PI0001664 (gene) Melon (PI 482460) v1

Overview


Name	PI0001664
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr03: 22357485 .. 22360804 (-)
RNA-Seq Expression	PI0001664
Synteny	PI0001664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATGTTTTGGCAAAGAAACATGAATTCTTAGCCACGACTAAAGCGATTATGGATTCATTAAAGGAGATGTTAGGGCAACTGTCATACTCCCTAAGACACGAAGCAATAAAATATATTTACACAAAGCGAATGAAGGAAGGGACCTCTATTACAGAACATGTTTTGGACATGATGATGCATTTCAATATTGCCGAAGTAAATGACAGTCCCATTGATGAGGCAAATTAGGTGAGCTTTATTTTACAATCTCTTTCAAAGAGTTTTGTACCATTTTAGACAAACGCTTCTCTGAATAAGATAGAGTTCACTTTGACCATCCTTCTGAATGAGCTCCAGCGTTTTCAGAACCATACCATGGGTAAAGGGAAAAAAGTGGAAGCAAATGTTGCTACCACAAAGAAAGGGTTTATGAGAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTTACAAATGAAAAATAAGGGAAAGGGGAAGACTCCTAAGAATTGTAAGGGAAAGAAAATTGTAAAAGGTAAATGTTACCACTGCAACCAAAACGGTCATTGGTTAAGGAATTGCCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGGTAAATATGATTTACTAGCTGTTGAAACGTGCTTAGTAGAATATGATATTTCAACTTGAATACTAGATTCATGAGTCACTAATCATATTTACTTCTCATTTCAGGAAACTAGTTCTTGTAAAACTTGCAGAAGACGAGATCATCCTTAAAGTTTGGAACAGAAGAAGTTGTCTTGGCTGAAGCAGTGAGAGATCTGAAGTTGTTTTGATAGATATATCATACTTAAAGTTGTTTTGTATGCTTCTCAAAACGTTGATGAATTTAATATCTATTTCTTGTATTTCGAAACAAATGTATAGAATATATTTTGAAATCAATGAAGTGTTCATTTTACTAGAAAATGTATTCAGTTTTGTTCTGCTATACTTATAAACAACTTATATAAGTTAAGACTAATTGGAGCAAAAATTTGTCTTTAATACTCAAATGTTTAGCATAAAGAAAAAAAGGTTTCTTCTAATGCCTATATATCGTACTTAAGATTCAGTCACGTAAATCTCAATGCAATTGGGAGATTGGTTCAGAGTAGACTTCTAAATTAGTTAGAAGATAACTCTTTACCTTCATGTGAGTCTTGTCTTAAAAGAATAATGATCAAAAGATCTTTTACTTGAAAAGGTCCCAAAGCCTAAATACTTTTAGAGCTCGTACATTCGGACCTCTGTGAACCAATGAAAGTCAAAGTTCAAAGAGGGTATGAATACTTCATCAATTTTGTTGATGATTATTCAAGGTTTGGTCATGTTTACCTATTGCATCACAAGTCTGATTCACTTGAAAAGTTCAGAGAATATAAGGTTGAAGTTGAGATTCAATTAGGTAAAACTATAAAGACACTTCGATTAGTCGAGGTGGAGAGTATGTGAACTTAAGATTCCAAGACTATCTAATAGAGCACGGAATCCAATCACAACTCTCTACATCTAGCACGCCTAAGCAAAACAATGTATCAGAAAAGAAGAAACGCCTTGTTGGACATGGTTTGCTTTATGATAAGCTTTGCTCTTTGATCCTCAAGAAAATAAAAAAATTTATTGACAAATGTCATATTCTTAGAGGAAAACCTCATCAGGAATCATCAAATCACGTAGTAAATTAGTGTTGAATAGGATTTCGAAAGATGTTTTAGATAAATATAGTTCATCCATTAAAGTAGTTGATAAAACTAGGGAATCTAGTTAGTCACATCCTTCTCAAGAGTTGAGAGTACCTCAAAGTAGTGGAAATGTTGTTCATTAGCCTGACTGTACTTGGTTTATCGAAAACCAAATCATCATACTTGATGATGGTTTAAAGGACTCATTGACTTATAAACAGGCAATGAATGATGTAGATTGTCTAACTGACATCAAGAAATGGCTAGCTACGCAATTTCAAATAAAAGATTTGAAAATGTGCAATGTGTTTTTAGGATCCAAATTGTTCGGAACCGCAAATACAGATCACTAGCCATGTCTCAAGCATCTTATATAGACAAAATATGTTTAGATATAAAATGCAGTATTCCAAAAAGGGTTTGTTGCATTACAGATTGGAATTCAAAAGTCTAAGGTAAAATATCCTAAGACACCTCAATTAGTTGAGGATATGAGACATATTCCCTTTGCTTCCATTGGTGGGAGTTTGTTGTATGCAATGTTATGTACTAGACCTGACATTGGCTACTTAAAAGGAATAGATTATCATTAAGAATATCCTAAAATAGTTTAGAAAATTAAAGACTACGTGCTCGTGTATAGTGTTGGATCTGATCCTTATCGGATACACTAATTCTGATTTCCAAAGATGTTAGAAAGTCAACATCGGAATCAATATTCACTCTAAATATAACAACAGTAGTGTGAAGAAACGTCAAATCAAATTGTACTATCTTATCTGGGCAATTGTGCATCGTGGTGATGTTGTAGTAATCCCGATACTTGTTGAGCAAATCATGGTCGTTTGGTTTACAAAGTCCTCCACGGCTAAAGTGTTTGAAGGTTGCCTAAATAGTTTCGGTCTATGAAGTTTGTACATTAGGACAAGTGGGAGACTATTTCAGTGTATGCTCTAGTTTATTGTTTTCATATGTTTATTGTACTCATATGAGTAATTCTCTCATGGTTAAATTCAATGTTGTTTTCTCACAAGTCCAAGTGGGAGTTTGTTGGAATTTATGCCCTAAAACTCGTAGTTTATAGTTTAAAATTATATTATATTCAACAAAGTGGTTATTGAGAACTTATAATGAAATTTGAATGTTATAATCTTGAATCCAATAAACGAAGGTCCCGAGGCTATCAAGTGTAGACTTAAACTTTATGTAGAGACATAAATGTGGATTAAGTTCGAGTATATAACTCAAACGGTTTACAGTGTATGAATAAGGTTGGGCGCCTTATTCTGAGGACACTATGGATGCAACCCGCTTTGTAGTTAGTACAAACCAAATGATCCTAAATCGTTCATGTAGAGACATGGAAGTGGAAGCATCCTATGTAAAGAGTTTACATAATGCTGGAACCATAAAATAGTTACTTTTAAATTATAACACCGTTGATTGTATAAAACGGACTATTTCGATTATTGATGACCTAGGTAACTTAATCTTAATCCTAAGCTAACTATGAACTTCTGTTCACACGGAATTATCCTTAGATCTGCAGAGGTGAGAGCAACTCATCAGCGTTGGCCCAATAAGCCTCCCATTTCAAGGGTAAGACTGGATGGATAG

mRNA sequence

ATGTCCGATGTTTTGGCAAAGAAACATGAATTCTTAGCCACGACTAAAGCGATTATGGATTCATTAAAGGAGATGTTAGGGCAACTGTCATACTCCCTAAGACACGAAGCAATAAAATATATTTACACAAAGCGAATGAAGGAAGGGACCTCTATTACAGAACATGTTTTGGACATGATGATGCATTTCAATATTGCCGAAACAAACGCTTCTCTGAATAAGATAGAGTTCACTTTGACCATCCTTCTGAATGAGCTCCAGCGTTTTCAGAACCATACCATGGGTAAAGGGAAAAAAGTGGAAGCAAATGTTGCTACCACAAAGAAAGGGTTTATGAGAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTTACAAATGAAAAATAAGGGAAAGGGGAAGACTCCTAAGAATTGTAAGGGAAAGAAAATTGTAAAAGGTAAATGTTACCACTGCAACCAAAACGGTCATTGGTTAAGGAATTGCCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGAGGTGAGAGCAACTCATCAGCGTTGGCCCAATAAGCCTCCCATTTCAAGGGTAAGACTGGATGGATAG

Coding sequence (CDS)

ATGTCCGATGTTTTGGCAAAGAAACATGAATTCTTAGCCACGACTAAAGCGATTATGGATTCATTAAAGGAGATGTTAGGGCAACTGTCATACTCCCTAAGACACGAAGCAATAAAATATATTTACACAAAGCGAATGAAGGAAGGGACCTCTATTACAGAACATGTTTTGGACATGATGATGCATTTCAATATTGCCGAAACAAACGCTTCTCTGAATAAGATAGAGTTCACTTTGACCATCCTTCTGAATGAGCTCCAGCGTTTTCAGAACCATACCATGGGTAAAGGGAAAAAAGTGGAAGCAAATGTTGCTACCACAAAGAAAGGGTTTATGAGAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTTACAAATGAAAAATAAGGGAAAGGGGAAGACTCCTAAGAATTGTAAGGGAAAGAAAATTGTAAAAGGTAAATGTTACCACTGCAACCAAAACGGTCATTGGTTAAGGAATTGCCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGAGGTGAGAGCAACTCATCAGCGTTGGCCCAATAAGCCTCCCATTTCAAGGGTAAGACTGGATGGATAG

Protein sequence

MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMMMHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQEVRATHQRWPNKPPISRVRLDG

Homology

[Close]

BLAST of PI0001664 vs. ExPASy TrEMBL
Match: A0A5D3DTN5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00440 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.3e-68
Identity = 138/175 (78.86%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LATTK IMDSL+EM  Q S+SLRHEAIKYIYTK+MKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLATTKEIMDSLREMFSQPSWSLRHEAIKYIYTKKMKEGTSVREHVLDMM 60

Query: 61  MHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTK 120
           MHFNIAETNA  NKIEFTLT LLNELQRFQN TMGKG  +EANVATT+K  + GSS  T+
Sbjct: 61  MHFNIAETNACTNKIEFTLTTLLNELQRFQNLTMGKGIGLEANVATTEKELVGGSSFMTR 120

Query: 121 VGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQ 176
           V  L MK K KGKTPKN +GKK+ KGKCYHCN++GHWLRNCPKY AEKKAEKEAQ
Sbjct: 121 VETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQ 175

[Close]

BLAST of PI0001664 vs. ExPASy TrEMBL
Match: A0A5A7TFI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004640 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.7e-63
Identity = 142/207 (68.60%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LAT K IMDSLK M GQ  + LRHEAIKYIYTKRMKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLKGMFGQPEWFLRHEAIKYIYTKRMKEGTSVREHVLDMM 60

Query: 61  MHFNIAE---------------------------TNASLNKIEFTLTILLNELQRFQNHT 120
           MHFNIAE                           TNASLNKIEF LT LLNELQRFQN T
Sbjct: 61  MHFNIAEVNSGAIDEANQVSFILESLSKSFIPFQTNASLNKIEFNLTTLLNELQRFQNLT 120

Query: 121 MGKGKKVEANVATTKKGFMRGSSSKTKVGPL----QMKNKGKGKTPKNCKGKK-IVKGKC 176
            GKGK+VE NVATTK  F RGSSSK+K GPL    +++ KGKGKTPK  KGKK I KGKC
Sbjct: 121 KGKGKEVETNVATTKGKFKRGSSSKSKSGPLKPNRKIEKKGKGKTPKQNKGKKTIEKGKC 180

[Close]

BLAST of PI0001664 vs. ExPASy TrEMBL
Match: A0A5D3C8J9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00080 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.3e-63
Identity = 136/203 (67.00%), Postives = 151/203 (74.38%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LA  K IMDSL EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLMEMFGQSSWSLRHKAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAET---------------------------NASLNKIEFTLTILLNELQRFQNHT 120
           MHFNIAE                            NASLNKI+FTLT LLNELQ+FQN T
Sbjct: 61  MHFNIAEVNGGPINEANQVSFILQSLLKSFVPFQRNASLNKIKFTLTTLLNELQQFQNLT 120

Query: 121 MGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQ 177
           M KGK+VEANVAT++K  + GSSSKTKVGP  MK   KGKTPKN K KK+VKGKCYHCN+
Sbjct: 121 MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKGKCYHCNE 180

[Close]

BLAST of PI0001664 vs. ExPASy TrEMBL
Match: A0A5D3CSI7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00060 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.3e-63
Identity = 135/202 (66.83%), Postives = 153/202 (75.74%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LA  K IMDSL+EM GQ S+SLRHEAIKYIYTK+MKEGTS+ EHV+DM+
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVVDMI 60

Query: 61  MHFNIA---------------------------ETNASLNKIEFTLTILLNELQRFQNHT 120
           +HFNIA                           +TN SL+KIEFTLT LLNELQRFQN T
Sbjct: 61  VHFNIAKVNGSPINEANQVSFILKSLSKSFVPFQTNVSLSKIEFTLTTLLNELQRFQNLT 120

Query: 121 MGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQ 176
           +GKGK+VEANVAT +K  +RGSSSK++VGP  MKNK KGKTPKN KGKK+ KGK YH N+
Sbjct: 121 IGKGKEVEANVATIEKKLLRGSSSKSRVGPSLMKNKRKGKTPKNSKGKKVAKGKYYHYNE 180

[Close]

BLAST of PI0001664 vs. ExPASy TrEMBL
Match: A0A5D3B6U9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00800 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 4.1e-62
Identity = 128/171 (74.85%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LAT K IMDSL+EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLREMFGQPSWSLRHKAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTK 120
           MHFNIAE N      EFTLT LLNELQRF N T+GKGK+VEANVAT +K  MRGSSSKT+
Sbjct: 61  MHFNIAEVNG-----EFTLTTLLNELQRFHNLTVGKGKEVEANVATIEKKLMRGSSSKTR 120

Query: 121 VGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAE 172
            GP  MK K KGKTPKN KGKK+ KGKCYHCN++GHWLRN  KYLA+KK +
Sbjct: 121 FGPSLMKKKKKGKTPKNSKGKKVAKGKCYHCNEDGHWLRNSSKYLAKKKVK 166

[Close]

BLAST of PI0001664 vs. NCBI nr
Match: KAA0041767.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27056.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-68
Identity = 138/175 (78.86%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LATTK IMDSL+EM  Q S+SLRHEAIKYIYTK+MKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLATTKEIMDSLREMFSQPSWSLRHEAIKYIYTKKMKEGTSVREHVLDMM 60

Query: 61  MHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTK 120
           MHFNIAETNA  NKIEFTLT LLNELQRFQN TMGKG  +EANVATT+K  + GSS  T+
Sbjct: 61  MHFNIAETNACTNKIEFTLTTLLNELQRFQNLTMGKGIGLEANVATTEKELVGGSSFMTR 120

Query: 121 VGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQ 176
           V  L MK K KGKTPKN +GKK+ KGKCYHCN++GHWLRNCPKY AEKKAEKEAQ
Sbjct: 121 VETLNMKKKRKGKTPKNSEGKKVAKGKCYHCNEDGHWLRNCPKYFAEKKAEKEAQ 175

[Close]

BLAST of PI0001664 vs. NCBI nr
Match: KAA0040307.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK23398.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-63
Identity = 142/207 (68.60%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LAT K IMDSLK M GQ  + LRHEAIKYIYTKRMKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLKGMFGQPEWFLRHEAIKYIYTKRMKEGTSVREHVLDMM 60

Query: 61  MHFNIAE---------------------------TNASLNKIEFTLTILLNELQRFQNHT 120
           MHFNIAE                           TNASLNKIEF LT LLNELQRFQN T
Sbjct: 61  MHFNIAEVNSGAIDEANQVSFILESLSKSFIPFQTNASLNKIEFNLTTLLNELQRFQNLT 120

Query: 121 MGKGKKVEANVATTKKGFMRGSSSKTKVGPL----QMKNKGKGKTPKNCKGKK-IVKGKC 176
            GKGK+VE NVATTK  F RGSSSK+K GPL    +++ KGKGKTPK  KGKK I KGKC
Sbjct: 121 KGKGKEVETNVATTKGKFKRGSSSKSKSGPLKPNRKIEKKGKGKTPKQNKGKKTIEKGKC 180

[Close]

BLAST of PI0001664 vs. NCBI nr
Match: KAA0035261.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07574.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-62
Identity = 136/203 (67.00%), Postives = 151/203 (74.38%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LA  K IMDSL EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLMEMFGQSSWSLRHKAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAET---------------------------NASLNKIEFTLTILLNELQRFQNHT 120
           MHFNIAE                            NASLNKI+FTLT LLNELQ+FQN T
Sbjct: 61  MHFNIAEVNGGPINEANQVSFILQSLLKSFVPFQRNASLNKIKFTLTTLLNELQQFQNLT 120

Query: 121 MGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQ 177
           M KGK+VEANVAT++K  + GSSSKTKVGP  MK   KGKTPKN K KK+VKGKCYHCN+
Sbjct: 121 MSKGKEVEANVATSEKKLVGGSSSKTKVGPSFMKKMRKGKTPKNSKEKKVVKGKCYHCNE 180

[Close]

BLAST of PI0001664 vs. NCBI nr
Match: KAA0032130.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14372.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-62
Identity = 135/202 (66.83%), Postives = 153/202 (75.74%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LA  K IMDSL+EM GQ S+SLRHEAIKYIYTK+MKEGTS+ EHV+DM+
Sbjct: 1   MSDVLAKKHESLAMAKEIMDSLREMFGQPSWSLRHEAIKYIYTKQMKEGTSVREHVVDMI 60

Query: 61  MHFNIA---------------------------ETNASLNKIEFTLTILLNELQRFQNHT 120
           +HFNIA                           +TN SL+KIEFTLT LLNELQRFQN T
Sbjct: 61  VHFNIAKVNGSPINEANQVSFILKSLSKSFVPFQTNVSLSKIEFTLTTLLNELQRFQNLT 120

Query: 121 MGKGKKVEANVATTKKGFMRGSSSKTKVGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQ 176
           +GKGK+VEANVAT +K  +RGSSSK++VGP  MKNK KGKTPKN KGKK+ KGK YH N+
Sbjct: 121 IGKGKEVEANVATIEKKLLRGSSSKSRVGPSLMKNKRKGKTPKNSKGKKVAKGKYYHYNE 180

[Close]

BLAST of PI0001664 vs. NCBI nr
Match: KAA0060200.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ95572.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 247.7 bits (631), Expect = 8.5e-62
Identity = 128/171 (74.85%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 1   MSDVLAKKHEFLATTKAIMDSLKEMLGQLSYSLRHEAIKYIYTKRMKEGTSITEHVLDMM 60
           MSDVLAKKHE LAT K IMDSL+EM GQ S+SLRH+AIKYIYTK+MKEGTS+ EHVLDMM
Sbjct: 1   MSDVLAKKHESLATAKEIMDSLREMFGQPSWSLRHKAIKYIYTKQMKEGTSVREHVLDMM 60

Query: 61  MHFNIAETNASLNKIEFTLTILLNELQRFQNHTMGKGKKVEANVATTKKGFMRGSSSKTK 120
           MHFNIAE N      EFTLT LLNELQRF N T+GKGK+VEANVAT +K  MRGSSSKT+
Sbjct: 61  MHFNIAEVNG-----EFTLTTLLNELQRFHNLTVGKGKEVEANVATIEKKLMRGSSSKTR 120

Query: 121 VGPLQMKNKGKGKTPKNCKGKKIVKGKCYHCNQNGHWLRNCPKYLAEKKAE 172
            GP  MK K KGKTPKN KGKK+ KGKCYHCN++GHWLRN  KYLA+KK +
Sbjct: 121 FGPSLMKKKKKGKTPKNSKGKKVAKGKCYHCNEDGHWLRNSSKYLAKKKVK 166

The following BLAST results are available for this feature:

BLAST of PI0001664 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTN5	1.3e-68	78.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00440...	[more]
A0A5A7TFI0	1.7e-63	68.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G0046...	[more]
A0A5D3C8J9	8.3e-63	67.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G0008...	[more]
A0A5D3CSI7	8.3e-63	66.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G0006...	[more]
A0A5D3B6U9	4.1e-62	74.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G0080...	[more]

BLAST of PI0001664 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041767.1	2.7e-68	78.86	gag/pol protein [Cucumis melo var. makuwa] >TYK27056.1 gag/pol protein [Cucumis ...	[more]
KAA0040307.1	3.5e-63	68.60	gag/pol protein [Cucumis melo var. makuwa] >TYK23398.1 gag/pol protein [Cucumis ...	[more]
KAA0035261.1	1.7e-62	67.00	gag/pol protein [Cucumis melo var. makuwa] >TYK07574.1 gag/pol protein [Cucumis ...	[more]
KAA0032130.1	1.7e-62	66.83	gag/pol protein [Cucumis melo var. makuwa] >TYK14372.1 gag/pol protein [Cucumis ...	[more]
KAA0060200.1	8.5e-62	74.85	gag/pol protein [Cucumis melo var. makuwa] >TYJ95572.1 gag/pol protein [Cucumis ...	[more]

BLAST of PI0001664 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 147..163 e-value: 0.0018 score: 27.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 146..163 e-value: 1.0E-5 score: 25.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 147..163 score: 9.883478
None	No IPR available	GENE3D	4.10.60.10		coord: 144..192 e-value: 2.6E-7 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..197
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 129..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001664.1	PI0001664.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding