PI0001643 (gene) Melon (PI 482460) v1

Overview


Name	PI0001643
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RT_RNaseH domain-containing protein
Location	chr09: 9415728 .. 9416024 (+)
RNA-Seq Expression	PI0001643
Synteny	PI0001643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGACCCTGGTAGCTTCACGGTGCCTTGCTCAATAGGCGGTATGGATCTAGGACGTGCACTATGCGATTTAGGAGCCAGCATCAACTTGATGCCTCTTTCAGTTTTTAAGAAATTGGAACTGGGAGAGGTACAACCAACATTAATGAGACTCCAATTTGCGGATAGATCCATCGCCAAACCTGAAGGGCGAATTGAAGATGTTTTGGTCAAAGTGGATAAATTTTTGTTCCCTGCCGACTTTTTCATTCTGGATTACGAAGCGGATAGGGACGTGCCAATTATATTGGGGTGA

mRNA sequence

ATGACAGACCCTGGTAGCTTCACGGTGCCTTGCTCAATAGGCGGTATGGATCTAGGACGTGCACTATGCGATTTAGGAGCCAGCATCAACTTGATGCCTCTTTCAGTTTTTAAGAAATTGGAACTGGGAGAGGTACAACCAACATTAATGAGACTCCAATTTGCGGATAGATCCATCGCCAAACCTGAAGGGCGAATTGAAGATGTTTTGGTCAAAGTGGATAAATTTTTGTTCCCTGCCGACTTTTTCATTCTGGATTACGAAGCGGATAGGGACGTGCCAATTATATTGGGGTGA

Coding sequence (CDS)

ATGACAGACCCTGGTAGCTTCACGGTGCCTTGCTCAATAGGCGGTATGGATCTAGGACGTGCACTATGCGATTTAGGAGCCAGCATCAACTTGATGCCTCTTTCAGTTTTTAAGAAATTGGAACTGGGAGAGGTACAACCAACATTAATGAGACTCCAATTTGCGGATAGATCCATCGCCAAACCTGAAGGGCGAATTGAAGATGTTTTGGTCAAAGTGGATAAATTTTTGTTCCCTGCCGACTTTTTCATTCTGGATTACGAAGCGGATAGGGACGTGCCAATTATATTGGGGTGA

Protein sequence

MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIAKPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG

Homology

[Close]

BLAST of PI0001643 vs. ExPASy TrEMBL
Match: A0A6J1DZC3 (uncharacterized protein LOC111024449 OS=Momordica charantia OX=3673 GN=LOC111024449 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.7e-37
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PCSIGG D+GRALCDL ASINLMPLS+FKKLE+G+  PT + LQ ADRSI 
Sbjct: 408 LKDPGSFTIPCSIGGKDVGRALCDLRASINLMPLSIFKKLEIGKASPTTVTLQLADRSIT 467

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
           KPEG+IEDVLVKVDKF+FPADF IL+ EAD+DVPIILG
Sbjct: 468 KPEGKIEDVLVKVDKFIFPADFIILNCEADKDVPIILG 505

[Close]

BLAST of PI0001643 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PC IGG D+GRALCDLGASINLMPLS+FKK E+G+  PT + LQ ADRSI 
Sbjct: 612 LKDPGSFTIPCLIGGKDVGRALCDLGASINLMPLSIFKKFEIGKASPTTVTLQLADRSIT 671

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
           KPEG+IEDVLVKVDKF+FP DF ILD EAD+DVPIILG
Sbjct: 672 KPEGKIEDVLVKVDKFIFPTDFIILDCEADKDVPIILG 709

[Close]

BLAST of PI0001643 vs. ExPASy TrEMBL
Match: A0A6J1DU40 (uncharacterized protein LOC111024426 OS=Momordica charantia OX=3673 GN=LOC111024426 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PC IGG D+ RALCDLGASINLMPLS+FKKLE+G+  PT + LQ ADRSI 
Sbjct: 217 LKDPGSFTIPCLIGGKDVARALCDLGASINLMPLSIFKKLEIGKASPTTVILQLADRSIT 276

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
           KPE +IED+LVKVDKF+FPADF ILD EAD+DVPIILG
Sbjct: 277 KPEVKIEDILVKVDKFIFPADFIILDSEADKDVPIILG 314

[Close]

BLAST of PI0001643 vs. ExPASy TrEMBL
Match: A0A6J1GJ68 (uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC111454344 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 3   DPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIAKP 62
           DPGSFT+P SIGG +LGRALCDLGASINLMPLS++KKL +GE +PT + LQ ADRSI  P
Sbjct: 257 DPGSFTIPVSIGGKELGRALCDLGASINLMPLSIYKKLGIGEARPTTVTLQLADRSITYP 316

Query: 63  EGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
           EG+IED+L++VDKF+FPADF ILDYEAD DVPIILG
Sbjct: 317 EGKIEDILIQVDKFIFPADFIILDYEADHDVPIILG 352

[Close]

BLAST of PI0001643 vs. ExPASy TrEMBL
Match: A0A6J1CPJ3 (uncharacterized protein LOC111012947 OS=Momordica charantia OX=3673 GN=LOC111012947 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+ C IGG D+GRALCDLGA INLMPLS+FKKLE+G+  PT + L  ADRSI 
Sbjct: 610 LKDPGSFTIXCLIGGKDVGRALCDLGAXINLMPLSIFKKLEIGKAXPTTVTLXLADRSIT 669

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
           KPEG+IEDVLVKVDKF+FPADF ILD EAD+DVPIILG
Sbjct: 670 KPEGKIEDVLVKVDKFIFPADFIILDCEADKDVPIILG 707

[Close]

BLAST of PI0001643 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 167.2 bits (422), Expect = 7.3e-38
Identity = 77/98 (78.57%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PCSIGG D+GRALCDLGASINLMP+S+FKKL +GE +PT + LQ ADRS+A
Sbjct: 418 LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 477

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
            PEG+IEDVLV+VDKF+FPADF ILDYEADRDVPIILG
Sbjct: 478 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILG 515

[Close]

BLAST of PI0001643 vs. NCBI nr
Match: XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])

HSP 1 Score: 167.2 bits (422), Expect = 7.3e-38
Identity = 77/98 (78.57%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PCSIGG D+GRALCDLGASINLMP+S+FKKL +GE +PT + LQ ADRS+A
Sbjct: 143 LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 202

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
            PEG+IEDVLV+VDKF+FPADF ILDYEADRDVPIILG
Sbjct: 203 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILG 240

[Close]

BLAST of PI0001643 vs. NCBI nr
Match: XP_030504924.1 (uncharacterized protein LOC115719886 [Cannabis sativa])

HSP 1 Score: 167.2 bits (422), Expect = 7.3e-38
Identity = 77/98 (78.57%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PCSIGG D+GRALCDLGASINLMP+S+FKKL +GE +PT + LQ ADRS+A
Sbjct: 10  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 69

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
            PEG+IEDVLV+VDKF+FPADF ILDYEADRDVPIILG
Sbjct: 70  HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILG 107

[Close]

BLAST of PI0001643 vs. NCBI nr
Match: XP_030477929.1 (uncharacterized protein LOC115694963 [Cannabis sativa])

HSP 1 Score: 167.2 bits (422), Expect = 7.3e-38
Identity = 77/98 (78.57%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PCSIGG D+GRALCDLGASINLMP+S+FKKL +GE +PT + LQ ADRS+A
Sbjct: 70  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 129

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
            PEG+IEDVLV+VDKF+FPADF ILDYEADRDVPIILG
Sbjct: 130 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILG 167

[Close]

BLAST of PI0001643 vs. NCBI nr
Match: XP_030478287.1 (uncharacterized protein LOC115695357 [Cannabis sativa])

HSP 1 Score: 167.2 bits (422), Expect = 7.3e-38
Identity = 77/98 (78.57%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1   MTDPGSFTVPCSIGGMDLGRALCDLGASINLMPLSVFKKLELGEVQPTLMRLQFADRSIA 60
           + DPGSFT+PCSIGG D+GRALCDLGASINLMP+S+FKKL +GE +PT + LQ ADRS+A
Sbjct: 91  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 150

Query: 61  KPEGRIEDVLVKVDKFLFPADFFILDYEADRDVPIILG 99
            PEG+IEDVLV+VDKF+FPADF ILDYEADRDVPIILG
Sbjct: 151 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILG 188

The following BLAST results are available for this feature:

BLAST of PI0001643 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZC3	8.7e-37	77.55	uncharacterized protein LOC111024449 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DY39	1.1e-36	76.53	uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DU40	1.6e-35	75.51	uncharacterized protein LOC111024426 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1GJ68	1.6e-35	76.04	uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC1114543...	[more]
A0A6J1CPJ3	2.8e-35	75.51	uncharacterized protein LOC111012947 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of PI0001643 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030509265.1	7.3e-38	78.57	uncharacterized protein LOC115723943 [Cannabis sativa]	[more]
XP_030502183.1	7.3e-38	78.57	uncharacterized protein LOC115717351 [Cannabis sativa]	[more]
XP_030504924.1	7.3e-38	78.57	uncharacterized protein LOC115719886 [Cannabis sativa]	[more]
XP_030477929.1	7.3e-38	78.57	uncharacterized protein LOC115694963 [Cannabis sativa]	[more]
XP_030478287.1	7.3e-38	78.57	uncharacterized protein LOC115695357 [Cannabis sativa]	[more]

BLAST of PI0001643 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..98 e-value: 5.4E-21 score: 76.7
None	No IPR available	PANTHER	PTHR33067:SF23	SUBFAMILY NOT NAMED	coord: 1..98
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 1..98
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 9..98 e-value: 4.70009E-15 score: 62.7392

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001643.1	PI0001643.1	mRNA