PI0001185 (gene) Melon (PI 482460) v1

Overview


Name	PI0001185
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr02: 6040222 .. 6040726 (+)
RNA-Seq Expression	PI0001185
Synteny	PI0001185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGGTTGAGAAAGTTTTTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCGGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCTCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACCAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCAATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAGACTACCTCCTCCTCATGTAAGTCCCTCTTTATCTCTGTTTTTGTGAATCTTCTTGGGTTTTGGAAATTTTTTTTGTCTGATTTCAAATGGGTTCTGTTTGTTTTCTTCAGGTTGTTGAGTTTTTATTGGTTTTTCTCGTGATGGGTCCGTTTGTGATTGATCTATGGTTTTGTTGATTAGAGGGGAGGAGATTAA

mRNA sequence

ATGGCGTTGGTTGAGAAAGTTTTTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCGGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCTCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACCAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCAATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAGACTACCTCCTCCTCATGGGAGGAGATTAA

Coding sequence (CDS)

ATGGCGTTGGTTGAGAAAGTTTTTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCGGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCTCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACCAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCAATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAGACTACCTCCTCCTCATGGGAGGAGATTAA

Protein sequence

MALVEKVFERVELGPSGGLQFPRWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKISIAHPPSSFFLSPKFFITCSHQQPPNHHHHLSFSFFSLFSPLSFHSDYLLLMGGD

Homology

[Close]

BLAST of PI0001185 vs. ExPASy TrEMBL
Match: A0A0A0LXS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629000 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 83/100 (83.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MALVEKVFERVELGPSGGLQFPRWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKISIA 60
           MA+VEK  ERVELGPSGGLQFP+WNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKI IA
Sbjct: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60

Query: 61  HPPSSFFLSPKFFITCSHQQPPNHHHHLS--FSFFSLFSP 99
           HPPSSFFLS KFFITCSHQQPP      S  F F S+FSP
Sbjct: 61  HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSP 100

[Close]

BLAST of PI0001185 vs. ExPASy TrEMBL
Match: A0A6J1JIM8 (uncharacterized protein LOC111485445 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485445 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.7e-05
Identity = 36/71 (50.70%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 14 GPSGGLQFPRWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKISIAHPPSSFFLSPKFF 73
          G  G LQ  +WNQLSPEVE AMSSKSKPQ      PNPK+P    IAHPP +     K  
Sbjct: 14 GRVGRLQLLQWNQLSPEVEVAMSSKSKPQ-----KPNPKIP----IAHPPPTLLPFTKNL 73

Query: 74 ITCSHQQPPNH 85
                  PNH
Sbjct: 74 QNFFTATTPNH 75

[Close]

BLAST of PI0001185 vs. NCBI nr
Match: KGN66543.1 (hypothetical protein Csa_007424 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 3.0e-35
Identity = 83/100 (83.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MALVEKVFERVELGPSGGLQFPRWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKISIA 60
           MA+VEK  ERVELGPSGGLQFP+WNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKI IA
Sbjct: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60

Query: 61  HPPSSFFLSPKFFITCSHQQPPNHHHHLS--FSFFSLFSP 99
           HPPSSFFLS KFFITCSHQQPP      S  F F S+FSP
Sbjct: 61  HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSP 100

[Close]

BLAST of PI0001185 vs. NCBI nr
Match: XP_022988095.1 (uncharacterized protein LOC111485445 isoform X1 [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 36/71 (50.70%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 14 GPSGGLQFPRWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKISIAHPPSSFFLSPKFF 73
          G  G LQ  +WNQLSPEVE AMSSKSKPQ      PNPK+P    IAHPP +     K  
Sbjct: 14 GRVGRLQLLQWNQLSPEVEVAMSSKSKPQ-----KPNPKIP----IAHPPPTLLPFTKNL 73

Query: 74 ITCSHQQPPNH 85
                  PNH
Sbjct: 74 QNFFTATTPNH 75

The following BLAST results are available for this feature:

BLAST of PI0001185 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS2	1.4e-35	83.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629000 PE=4 SV=1	[more]
A0A6J1JIM8	7.7e-05	50.70	uncharacterized protein LOC111485445 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of PI0001185 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66543.1	3.0e-35	83.00	hypothetical protein Csa_007424 [Cucumis sativus]	[more]
XP_022988095.1	1.6e-04	50.70	uncharacterized protein LOC111485445 isoform X1 [Cucurbita maxima]	[more]

BLAST of PI0001185 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001185.1	PI0001185.1	mRNA