PI0001073 (gene) Melon (PI 482460) v1

Overview


Name	PI0001073
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	helicase sen1-like
Location	chr07: 19195246 .. 19198487 (-)
RNA-Seq Expression	PI0001073
Synteny	PI0001073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCATCAATATCTAACGACATTGATATGTTTGGACGAACAATCACGTCATTGACTTTTGAATCTTTGTAAGTTTTTACTTTATCATTTATCGTCAAATTATTACTAACTATTGGCACGAAACACAGTAAAAAACCTAAATGATATATTAATATCAATTATTAAATTTTTTGTGTGTATATAATAAAATAAACTATAAATTTGAGAAACATGGCACGTGTTATAGAGTAGGAAATCATATCCGTGCATGCTATTAGACTAAAAAACCTTATATTAGTAAAGTCAATTTAATAATTTCGATCTTCTAAAATGGAAAAGAAATTTTTTTCACTATGTTGTAATTAACCAAAATTAATTTGCATATTTATTTAATTTAAAATAGAGTATACTTGAGAATTTAGCGGCTATTTATATGTTTTCTTAAATCACAGTGTTTCATTTTCTTTAAATAGAAACTACATCCAGCTTATAACACGATCCTTCAGGAAATAAGGTTTTTCTTTTTTTTCTTTTTAATTTGTAAATATATATATAATCTTTTTCATTTTATAAGTTTATTTCGAGTAAACGAGTCATTAATGAATATTCTAAAAAGAAGGTGTCATTAATGAATTGCATATTTAGATGAATGAAAAGTCAAAAGTTGGGGGATTTTATAACTATTTGATTTTTCTTTTTCTTTTTTTTAATAAAAAAATTAAGGTTAAAAATACAACTATTTTTTCTTTATAAAAAAATACATATATGCCTACCGATATTTTACAACTTTAAACCAAAATTTGAAAAAAAAGAAAAGGTAATAAATTTTGTTTTTATTCGAAAGTTTTCTCATTGTAAGAGAATAGTGAAAAAAAAGTAATAAAGTTTGCTAAATACAAGAAAATGATAAATTTAAAATAGTATTAAGCTATATTATTAACATTGATTTAAAAAATAAAATAAGTTTTATATTCCAAATGTTTAATTTTAGTTCATGTTTTTTTAATAAATCGTAAAAACAATTCATGGTTAATGTCTTTTTTAAATATACGTACTCTATTAGCTTTTTTAATATATTATTGTTATTTAACTAATTCTAACAAAATCAATCAATTTTAATTAAGAGAAAATGAAAACCTAAAATAATATTTGAAAAAAAAAAAAATTAAAATTCTCTTTTTAAGACCCCCTTAAAAATCTATTGAGTTTACTCATCATTTCAATTATTTTCCATCTCCATCATGTTTGTCTTACCATAAAAAACCGAATGTAGTTAACTGTCATCTTTTATAATAAGTTTAATTAATCATAAACAAAAACTTGTGAACGATAAATTCAAATATAATTAGTAAATAAAAAGTGATTGGAGAATATATGGTTGGAATGTTGGCTACAATTATTAAAAAGAAAAAAAAATGGAATAAAAAATATTGCATAAAAACTATGAAAAATAATGATGAACAAACTTGAGTAAATAACGATGGATAATGAAATAAGATGGAAAAAGAAAGAAAAATAAAAATGTAATTAAAAAGTTAGATGTTGAAAAATATTATTCCTACAGAGTTGAACTAAAAAAGAGAGAAGAGGTGAATTAATTTGAAAACATATAATTAATTTGTGTAGCGTATTACCGAATAGACCCTTTAATTTGGGAAGTGAAACTCCCGTCTACCAGGGATGTAATAGTCTATTCATAATAAAAGGGGGTGTAAAATGTAATTATGTTAATAGAAGGTGCACTTTTTGGGGGGTTTTTGAAATGAAGTATTGAAAGGATAATTAATATATAAATAATTTAATTAATATTATAAATAAAATTGAAAAAAAAAAAAAAAGGGAAAAAACCGGGAGAAAATTTAACGGTGAACGGAGAAAATCGGAAGCGGGGGAAGGAGTCTCGATATTTCCTATATAAAGCCCCATGACACATTGCCTTGCCTCATATTTGCATTCTCTTTCTTCCTCGCTCTTGCTTGCTCTGACTCTTAAATCAAAGAGCTTCCTTTTCTTCTCTCTCTCTAAAATTTGTCTCTCTCTCTCTCTCTCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCCACTTATGCATTCAAGGATTCAAGGACTACCCATAAGGTAAAATTCTCCAACCACAAATACCCACCAATTTTTTTTGTCCCTTTTTTTTCAGCCTACAAATTTGTGGGTGTTCCTAAGATCAGTCGTCTTCCAGTAATGAGATTCAAATTGCTTAATTCTTGCCTTTGACTATTGGTTGGTTACATTACTTTTGAATCTGTACTGCCTATTATTGATTAGATTTATATTCGTCGGTTCGATCTCTAAGTTAGGTTGTTCTTGATTGGAATTGTAATGAGATATTGGATTCTGGGATTCAAGTGCTTTTGGTTAGTTCTTGTTGGTTTGGTAATTTTGACGACTGAGGAAGAGGAATTGATTGAAGGCGTGTGCATGATTTATTTGTTTATCTCTATTTTCCCTTTTTTGCCCTAGAAAGATGCTTCTTGGTCGTGATTAAATATTGGGTATATTTGGTTCAATGGCGGCTCCCTTGATCTGGTGCGATTTACTGGATTTTTAGTCGAACTGTCTTGCACTGTTTTCTGGTACCATGAATACCTAATTGGTTTGACACGCGGACGTTGTTGTTCTGTTTTTGCCAATTAAGCGTCGTGGTTGAGTTAAAACCTGCTCCTTAGTTTGCTCCATGTTTACTTGGTGTTCTTTGTCGTGGTGAGTCTGGTAACGTTAGTGGTTGTCGTTTGGAACCTTTTTTGGAGTTCTGAATCACGTGCGATTTAATAATCTGAATGGTGTTGTATGCAGTATCGTTAGTTGTGGATTCTACCGAAAGTTATACATTTTACTTGAACTAATTTTGTCGTGCATACATGACTGATGTTTTAATATCACTTCACATATAAGTTGTTCCCTATTGAAGAGTTGATTTGTTTACATTGAGCCCATAGGATCCCTACAACGTTGAACCATGATGATTAAACCTTTATGAATTAAAACTTGGATCTTTCTTTCTTTCCCTTCTTTTTTTTTGCAACATTGACTGTTCTTGTCTTTTAATTTTTTGCACTTATTTTCCTTTTTCATTTTATAGTGTGTTGGTTATTCTTTCTTTTCTATATATGCTGTATAACTCTATTTCATTCATGTATGGACTTGCAGTTGAGGTTCAAGGTTTATTGGACTCGCATCCTTTTCAAGTTCGTCATTGGAGATAACTGTATCAATAGGGACTGTTAA

mRNA sequence

ATGAAACCATCAATATCTAACGACATTGATATGTTTGGACGAACAATCACGTCATTGACTTTTGAATCTTTAGCTTCCTTTTCTTCTCTCTCTCTAAAATTTGTCTCTCTCTCTCTCTCTCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCCACTTATGCATTCAAGGATTCAAGGACTACCCATAAGTTGAGGTTCAAGGTTTATTGGACTCGCATCCTTTTCAAGTTCGTCATTGGAGATAACTGTATCAATAGGGACTGTTAA

Coding sequence (CDS)

ATGAAACCATCAATATCTAACGACATTGATATGTTTGGACGAACAATCACGTCATTGACTTTTGAATCTTTAGCTTCCTTTTCTTCTCTCTCTCTAAAATTTGTCTCTCTCTCTCTCTCTCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCCACTTATGCATTCAAGGATTCAAGGACTACCCATAAGTTGAGGTTCAAGGTTTATTGGACTCGCATCCTTTTCAAGTTCGTCATTGGAGATAACTGTATCAATAGGGACTGTTAA

Protein sequence

MKPSISNDIDMFGRTITSLTFESLASFSSLSLKFVSLSLSPPPPSLSLSLSTYAFKDSRTTHKLRFKVYWTRILFKFVIGDNCINRDC

Homology

[Close]

BLAST of PI0001073 vs. ExPASy TrEMBL
Match: A0A6J1FPN2 (helicase sen1-like OS=Cucurbita moschata OX=3662 GN=LOC111446131 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 44 PSLSLSLSTYAFKDSRTTHKLRFKVYWTRILFKFVIGDNCINRDC 89
          P   LSLST AFKDSR+ H+   +VYW  ILFKF+IGDNCINR C
Sbjct: 42 PLFFLSLSTCAFKDSRSIHE-SVEVYWILILFKFLIGDNCINRAC 85

[Close]

BLAST of PI0001073 vs. NCBI nr
Match: KAG7024634.1 (SPBC29A10.10c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 45 SLSLSLSTYAFKDSRTTHKLRFKVYWTRILFKFVIGDNCINRDC 89
          SLSLS+S YAFKDSR+ HKLR KVYWTRILFK + GDNCINRDC
Sbjct: 33 SLSLSISIYAFKDSRSIHKLRVKVYWTRILFKILAGDNCINRDC 76

[Close]

BLAST of PI0001073 vs. NCBI nr
Match: KAG6591752.1 (hypothetical protein SDJN03_14098, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 57 DSRTTHKLRFKVYWTRILFKFVIGDNCINRDC 89
          DSR+ HKLR KVYWTRILFK + GDNCINRDC
Sbjct: 2  DSRSIHKLRVKVYWTRILFKILAGDNCINRDC 33

[Close]

BLAST of PI0001073 vs. NCBI nr
Match: XP_022940568.1 (helicase sen1-like [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-06
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 44 PSLSLSLSTYAFKDSRTTHKLRFKVYWTRILFKFVIGDNCINRDC 89
          P   LSLST AFKDSR+ H+   +VYW  ILFKF+IGDNCINR C
Sbjct: 42 PLFFLSLSTCAFKDSRSIHE-SVEVYWILILFKFLIGDNCINRAC 85

The following BLAST results are available for this feature:

BLAST of PI0001073 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPN2	3.2e-06	66.67	helicase sen1-like OS=Cucurbita moschata OX=3662 GN=LOC111446131 PE=4 SV=1	[more]

BLAST of PI0001073 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024634.1	1.1e-11	81.82	SPBC29A10.10c, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591752.1	1.7e-06	81.25	hypothetical protein SDJN03_14098, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940568.1	6.6e-06	66.67	helicase sen1-like [Cucurbita moschata]	[more]

BLAST of PI0001073 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001073.1	PI0001073.1	mRNA