PI0001045 (gene) Melon (PI 482460) v1

Overview


Name	PI0001045
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 4316674 .. 4317670 (+)
RNA-Seq Expression	PI0001045
Synteny	PI0001045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTACGAGGTAAGCTCCGACGCCTTAGACAAATTGGAAGTATTCTCGACTATGTAAAGGAGTTTACCACACTCATGCTAGAGATAGACGATTTGTCCGCAAAAGATGCTTTTTTCCATTTTAAGGATGAATTGAAGGATTGTGCTAAGGTGAAACTAGACCGTCGTAATGTGCAAACTCTAGATAACGTCATTGCAGTAGCAGAGACTTTAGTTGACTATTCTAGCCAACAAAAGGGAAAGAAGCCTGGTCCATTTAAAAGTGGAAAGAGTGAGAAGCAGAAGGATCATGCCCGACGAGACAGTGGAAAGGAAAAATCCTTCAACGGTAAGTATGGCAAGGCTACGGGCAATCATAAAGGTGAGTCCTCAAATCCATAAACCGTGCTTTGTTTGTGATAGCCCACATTGGACAGAGACTGTCCAAATCGAAAGGCTATGAATTGTTACGCCCAAAATTTTGCCCCATAATTTTTTCGAGAATAAAGGCCCCATAGCATTGCCCAAAGGGAGCCTAAAACACGACCACATGACCAATAAAACAAATTTGCTACCTAACAGACTCAAAAACACATTTGGCCCGACAGAGATAGTACTGCATATAAGCCACAACCAGCGCACAACACCATGGGCGCGCCAGCCTGCGCGCAACACCATGTGTGCGCAAGGCTGGGCACAACATCAGGCACGCAACATCATGGGCGCGCAAGCCATGCGCAGCACCATGCGCCGTGCGAAAGACAGAGGGAAGGGGCTGGCAGAGAAGCTTCTAGAACTTTCCATGACGGACGGGAAAGTTCCAGAAGGCACGACAATGGTCGAGAAGAGGCTGAGACGCGCGCGTGGGATCCGGAAGGCTCGCGAAAAGGCGCGCGCCTGCTGGGCGTGTCTAGAGGCATCTAGAACCTTCTATGACGATCGGGAAGTTTCAATGTCGGTCTTGTGTGTCATGAAAGTCCAGAATCATCCTAACCTACCTTTTAAGGCTGTTTAA

mRNA sequence

ATGGAAGTACGAGGTAAGCTCCGACGCCTTAGACAAATTGGAAGTATTCTCGACTATGTAAAGGAGTTTACCACACTCATGCTAGAGATAGACGATTTGTCCGCAAAAGATGCTTTTTTCCATTTTAAGGATGAATTGAAGGATTGTGCTAAGGTGAAACTAGACCGTCGTAATGTGCAAACTCTAGATAACGTCATTGCAGTAGCAGAGACTTTAGTTGACTATTCTAGCCAACAAAAGGGAAAGAAGCCTGGTCCATTTAAAAGTGGAAAGAGTGAGAAGCAGAAGGATCATGCCCGACGAGACAGTGGAAAGGAAAAATCCTTCAACGGTAAGTATGGCAAGGCTACGGGCAATCATAAAGAGATAGTACTGCATATAAGCCACAACCAGCGCACAACACCATGGGCGCGCCAGCCTGCGCGCAACACCATGTGTGCGCAAGGCTGGGCACAACATCAGGCACGCAACATCATGGGCGCGCAAGCCATGCGCAGCACCATGCGCCGTGCGAAAGACAGAGGGAAGGGGCTGGCAGAGAAGCTTCTAGAACTTTCCATGACGGACGGGAAAGTTCCAGAAGGCACGACAATGGTCGAGAAGAGGCTGAGACGCGCGCGTGGGATCCGGAAGGCTCGCGAAAAGGCGCGCGCCTGCTGGGCGTGTCTAGAGGCATCTAGAACCTTCTATGACGATCGGGAAGTTTCAATGTCGGTCTTGTGTGTCATGAAAGTCCAGAATCATCCTAACCTACCTTTTAAGGCTGTTTAA

Coding sequence (CDS)

ATGGAAGTACGAGGTAAGCTCCGACGCCTTAGACAAATTGGAAGTATTCTCGACTATGTAAAGGAGTTTACCACACTCATGCTAGAGATAGACGATTTGTCCGCAAAAGATGCTTTTTTCCATTTTAAGGATGAATTGAAGGATTGTGCTAAGGTGAAACTAGACCGTCGTAATGTGCAAACTCTAGATAACGTCATTGCAGTAGCAGAGACTTTAGTTGACTATTCTAGCCAACAAAAGGGAAAGAAGCCTGGTCCATTTAAAAGTGGAAAGAGTGAGAAGCAGAAGGATCATGCCCGACGAGACAGTGGAAAGGAAAAATCCTTCAACGGTAAGTATGGCAAGGCTACGGGCAATCATAAAGAGATAGTACTGCATATAAGCCACAACCAGCGCACAACACCATGGGCGCGCCAGCCTGCGCGCAACACCATGTGTGCGCAAGGCTGGGCACAACATCAGGCACGCAACATCATGGGCGCGCAAGCCATGCGCAGCACCATGCGCCGTGCGAAAGACAGAGGGAAGGGGCTGGCAGAGAAGCTTCTAGAACTTTCCATGACGGACGGGAAAGTTCCAGAAGGCACGACAATGGTCGAGAAGAGGCTGAGACGCGCGCGTGGGATCCGGAAGGCTCGCGAAAAGGCGCGCGCCTGCTGGGCGTGTCTAGAGGCATCTAGAACCTTCTATGACGATCGGGAAGTTTCAATGTCGGTCTTGTGTGTCATGAAAGTCCAGAATCATCCTAACCTACCTTTTAAGGCTGTTTAA

Protein sequence

MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQTLDNVIAVAETLVDYSSQQKGKKPGPFKSGKSEKQKDHARRDSGKEKSFNGKYGKATGNHKEIVLHISHNQRTTPWARQPARNTMCAQGWAQHQARNIMGAQAMRSTMRRAKDRGKGLAEKLLELSMTDGKVPEGTTMVEKRLRRARGIRKAREKARACWACLEASRTFYDDREVSMSVLCVMKVQNHPNLPFKAV

Homology

[Close]

BLAST of PI0001045 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.2e-34
Identity = 85/122 (69.67%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IAVAETLVDYS+Q KGKKPGP K  GKS+K K+  R+D GK K+F  K GK  G 
Sbjct: 309 TLDDAIAVAETLVDYSAQSKGKKPGPEKHGGKSDKTKNFGRKDGGKVKTFQWKNGKNDGA 368

Query: 121 HK 122
           H+
Sbjct: 369 HR 370

[Close]

BLAST of PI0001045 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSIL+YVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA AETLVDYS+Q KGKKPGP K  GKS+K K+  RRD GK K+F  K GK  G 
Sbjct: 309 TLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKSDKTKNFGRRDGGKVKTFQWKNGKNDGA 368

Query: 121 HK 122
           H+
Sbjct: 369 HR 370

[Close]

BLAST of PI0001045 vs. ExPASy TrEMBL
Match: A0A5A7TAA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00340 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 83/122 (68.03%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA AETLVDYS+Q KGKKPGP K  GK +K K+  R+D GK K F  K GK  G 
Sbjct: 309 TLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKPDKTKNFGRKDGGKVKMFQWKNGKNDGA 368

Query: 121 HK 122
           H+
Sbjct: 369 HR 370

[Close]

BLAST of PI0001045 vs. ExPASy TrEMBL
Match: A0A5A7SJU9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002790 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.0e-32
Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 293 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 352

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA  ETLVDYS+Q KGKKPGP K  GK +K K+  R+D GK K+F  K GK  G 
Sbjct: 353 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 412

Query: 121 HK 122
           H+
Sbjct: 413 HR 414

[Close]

BLAST of PI0001045 vs. ExPASy TrEMBL
Match: A0A1S3C1B3 (uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.0e-32
Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 160 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 219

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA  ETLVDYS+Q KGKKPGP K  GK +K K+  R+D GK K+F  K GK  G 
Sbjct: 220 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 279

Query: 121 HK 122
           H+
Sbjct: 280 HR 281

[Close]

BLAST of PI0001045 vs. NCBI nr
Match: KAA0040659.1 (uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-33
Identity = 85/122 (69.67%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IAVAETLVDYS+Q KGKKPGP K  GKS+K K+  R+D GK K+F  K GK  G 
Sbjct: 309 TLDDAIAVAETLVDYSAQSKGKKPGPEKHGGKSDKTKNFGRKDGGKVKTFQWKNGKNDGA 368

Query: 121 HK 122
           H+
Sbjct: 369 HR 370

[Close]

BLAST of PI0001045 vs. NCBI nr
Match: KAA0065760.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 4.8e-33
Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSIL+YVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILEYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA AETLVDYS+Q KGKKPGP K  GKS+K K+  RRD GK K+F  K GK  G 
Sbjct: 309 TLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKSDKTKNFGRRDGGKVKTFQWKNGKNDGA 368

Query: 121 HK 122
           H+
Sbjct: 369 HR 370

[Close]

BLAST of PI0001045 vs. NCBI nr
Match: KAA0040414.1 (uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-32
Identity = 83/122 (68.03%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 249 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 308

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA AETLVDYS+Q KGKKPGP K  GK +K K+  R+D GK K F  K GK  G 
Sbjct: 309 TLDDAIAAAETLVDYSAQSKGKKPGPEKYGGKPDKTKNFGRKDGGKVKMFQWKNGKNDGA 368

Query: 121 HK 122
           H+
Sbjct: 369 HR 370

[Close]

BLAST of PI0001045 vs. NCBI nr
Match: XP_008455798.1 (PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-32
Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 160 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 219

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA  ETLVDYS+Q KGKKPGP K  GK +K K+  R+D GK K+F  K GK  G 
Sbjct: 220 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 279

Query: 121 HK 122
           H+
Sbjct: 280 HR 281

[Close]

BLAST of PI0001045 vs. NCBI nr
Match: KAA0025964.1 (uncharacterized protein E6C27_scaffold34G002790 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 4.1e-32
Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MEVRGKLRRLRQIGSILDYVKEFTTLMLEIDDLSAKDAFFHFKDELKDCAKVKLDRRNVQ 60
           +E RGKLRRLR  GSILDYVKEFTTLMLEI DL  K+A F FKD LKD AK++LDRRNVQ
Sbjct: 293 IESRGKLRRLRHTGSILDYVKEFTTLMLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQ 352

Query: 61  TLDNVIAVAETLVDYSSQQKGKKPGPFK-SGKSEKQKDHARRDSGKEKSFNGKYGKATGN 120
           TLD+ IA  ETLVDYS+Q KGKKPGP K  GK +K K+  R+D GK K+F  K GK  G 
Sbjct: 353 TLDDAIAAVETLVDYSAQSKGKKPGPEKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGA 412

Query: 121 HK 122
           H+
Sbjct: 413 HR 414

The following BLAST results are available for this feature:

BLAST of PI0001045 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THC0	6.2e-34	69.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7VEX8	2.3e-33	68.85	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]
A0A5A7TAA5	1.2e-32	68.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SJU9	2.0e-32	67.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3C1B3	2.0e-32	67.21	uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=...	[more]

BLAST of PI0001045 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040659.1	1.3e-33	69.67	uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]	[more]
KAA0065760.1	4.8e-33	68.85	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040414.1	2.4e-32	68.03	uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]	[more]
XP_008455798.1	4.1e-32	67.21	PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo]	[more]
KAA0025964.1	4.1e-32	67.21	uncharacterized protein E6C27_scaffold34G002790 [Cucumis melo var. makuwa]	[more]

BLAST of PI0001045 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..116
None	No IPR available	PANTHER	PTHR34482:SF18	RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED	coord: 4..171
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 4..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001045.1	PI0001045.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process