PI0000993 (gene) Melon (PI 482460) v1

Overview
NamePI0000993
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Locationchr02: 17622001 .. 17622504 (-)
RNA-Seq ExpressionPI0000993
SyntenyPI0000993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACTGCGAAACAGTGGCTCTGACGCAGGTAACGAACGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACGATGCCATGCTCAATAGGCGGCATGGATCTAGGTCGCGCACTATGTGATCTGGGAGCCAGTATCAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGAGGCGTAGCCAACACTCATGAGGCTCCAATTCGCTGACAGATCCATCGCCAAGCCTGAGGGGAAAATTGAAGACGTTTTGGTTATGGTGGATAAATTCTTGTTCCCCGCCGACTTTGTCATTCTGGATTACGAAGCGGATCGGGAGGTGCCAATTATCTTGGGGCGACCATTCTTGTCTACTGGTCGCGTCCTAATAGATGTCCACCAAGGGGAATTAACTCTGCGTTTGAATGATGAAGAGGTCAAGTTCAACGTCGCAAATGCAGTGAATTCCCCTTTGACGAAAGCTGCAGCACAATAG

mRNA sequence

ATGAATGACTGCGAAACAGTGGCTCTGACGCAGGTAACGAACGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACGATGCCATGCTCAATAGGCGGCATGGATCTAGGTCGCGCACTATGTGATCTGGGAGCCAGTATCAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGAGGCATCCATCGCCAAGCCTGAGGGGAAAATTGAAGACGTTTTGGTTATGGTGGATAAATTCTTGTTCCCCGCCGACTTTGTCATTCTGGATTACGAAGCGGATCGGGAGGTGCCAATTATCTTGGGGCGACCATTCTTGTCTACTGGTCGCGTCCTAATAGATGTCCACCAAGGGGAATTAACTCTGCGTTTGAATGATGAAGAGGTCAAGTTCAACGTCGCAAATGCAGTGAATTCCCCTTTGACGAAAGCTGCAGCACAATAG

Coding sequence (CDS)

ATGAATGACTGCGAAACAGTGGCTCTGACGCAGGTAACGAACGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACGATGCCATGCTCAATAGGCGGCATGGATCTAGGTCGCGCACTATGTGATCTGGGAGCCAGTATCAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGAGGCATCCATCGCCAAGCCTGAGGGGAAAATTGAAGACGTTTTGGTTATGGTGGATAAATTCTTGTTCCCCGCCGACTTTGTCATTCTGGATTACGAAGCGGATCGGGAGGTGCCAATTATCTTGGGGCGACCATTCTTGTCTACTGGTCGCGTCCTAATAGATGTCCACCAAGGGGAATTAACTCTGCGTTTGAATGATGAAGAGGTCAAGTTCAACGTCGCAAATGCAGTGAATTCCCCTTTGACGAAAGCTGCAGCACAATAG

Protein sequence

MNDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSIFKKLELGEASIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPIILGRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSPLTKAAAQ
Homology
BLAST of PI0000993 vs. ExPASy TrEMBL
Match: A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.6e-53
Identity = 113/159 (71.07%), Postives = 124/159 (77.99%), Query Frame = 0

Query: 2   NDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSIF 61
           NDCETVALT  T+D+ KNG P+KMTD  SFT+PCSI  MDLG  LCDLGASINLMPLSIF
Sbjct: 97  NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 156

Query: 62  KKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPIIL 121
           KKLE+ E             SIAK EGKIED+LV VDKFLF ADF+ILDYEA++EVPII 
Sbjct: 157 KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIF 216

Query: 122 GRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSP 149
           GRPFLSTG  LIDVHQGELT+R ND EVKFNV NA+  P
Sbjct: 217 GRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFP 254

BLAST of PI0000993 vs. ExPASy TrEMBL
Match: A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.6e-53
Identity = 113/159 (71.07%), Postives = 124/159 (77.99%), Query Frame = 0

Query: 2   NDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSIF 61
           NDCETVALT  T+D+ KNG P+KMTD  SFT+PCSI  MDLG  LCDLGASINLMPLSIF
Sbjct: 8   NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 67

Query: 62  KKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPIIL 121
           KKLE+ E             SIAK EGKIED+LV VDKFLF ADF+ILDYEA++EVPII 
Sbjct: 68  KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIF 127

Query: 122 GRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSP 149
           GRPFLSTG  LIDVHQGELT+R ND EVKFNV NA+  P
Sbjct: 128 GRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFP 165

BLAST of PI0000993 vs. ExPASy TrEMBL
Match: A0A5D3DPZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00150 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.5e-51
Identity = 109/148 (73.65%), Postives = 118/148 (79.73%), Query Frame = 0

Query: 1   MNDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSI 60
           +ND ETVALTQ TND FKNGVPEKMTDP SFT+  S GGMDLG ALCDLGASINLMPLSI
Sbjct: 18  INDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLGCALCDLGASINLMPLSI 77

Query: 61  FKKLELGEASIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPIILGRPFLSTGRVL 120
           FKK+ +G       EGKIEDVLV VDKFLF  DFVILDY+ADR+VPIILGRPFLST   L
Sbjct: 78  FKKVGIG-------EGKIEDVLVKVDKFLFSEDFVILDYKADRKVPIILGRPFLSTSCTL 137

Query: 121 IDVHQGELTLRLNDEEVKFNVANAVNSP 149
           I VHQGELT+  NDEE+KFNV   +  P
Sbjct: 138 IGVHQGELTMHFNDEEIKFNVVKPMKFP 158

BLAST of PI0000993 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.4e-49
Identity = 100/157 (63.69%), Postives = 127/157 (80.89%), Query Frame = 0

Query: 1   MNDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSI 60
           + + ETVALT+ +++VFK+ +P K+ DPGSFT+PC IGG D+GRALCDLGASINLMPLSI
Sbjct: 588 LGEYETVALTECSSNVFKSKMPPKLKDPGSFTIPCLIGGKDVGRALCDLGASINLMPLSI 647

Query: 61  FKKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPII 120
           FKK E+G+A            SI KPEGKIEDVLV VDKF+FP DF+ILD EAD++VPII
Sbjct: 648 FKKFEIGKASPTTVTLQLADRSITKPEGKIEDVLVKVDKFIFPTDFIILDCEADKDVPII 707

Query: 121 LGRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAV 146
           LGRPFL+TG  LIDV +GELT+R++D++V FN+ +A+
Sbjct: 708 LGRPFLATGETLIDVKKGELTMRVDDQKVTFNMLDAM 744

BLAST of PI0000993 vs. ExPASy TrEMBL
Match: A0A6J1CPJ3 (uncharacterized protein LOC111012947 OS=Momordica charantia OX=3673 GN=LOC111012947 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.1e-49
Identity = 101/160 (63.12%), Postives = 127/160 (79.38%), Query Frame = 0

Query: 1   MNDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSI 60
           + + ETVALT+ +++VFK+  P K+ DPGSFT+ C IGG D+GRALCDLGA INLMPLSI
Sbjct: 586 LGEYETVALTECSSNVFKSKXPPKLKDPGSFTIXCLIGGKDVGRALCDLGAXINLMPLSI 645

Query: 61  FKKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPII 120
           FKKLE+G+A            SI KPEGKIEDVLV VDKF+FPADF+ILD EAD++VPII
Sbjct: 646 FKKLEIGKAXPTTVTLXLADRSITKPEGKIEDVLVKVDKFIFPADFIILDCEADKDVPII 705

Query: 121 LGRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSP 149
           LGRPFL+TG  LIDV +GELT+R++D++V FN+ +A+  P
Sbjct: 706 LGRPFLATGETLIDVKKGELTMRVDDQKVTFNMLDAMKYP 745

BLAST of PI0000993 vs. NCBI nr
Match: KAA0067858.1 (uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 7.4e-53
Identity = 113/159 (71.07%), Postives = 124/159 (77.99%), Query Frame = 0

Query: 2   NDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSIF 61
           NDCETVALT  T+D+ KNG P+KMTD  SFT+PCSI  MDLG  LCDLGASINLMPLSIF
Sbjct: 97  NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 156

Query: 62  KKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPIIL 121
           KKLE+ E             SIAK EGKIED+LV VDKFLF ADF+ILDYEA++EVPII 
Sbjct: 157 KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIF 216

Query: 122 GRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSP 149
           GRPFLSTG  LIDVHQGELT+R ND EVKFNV NA+  P
Sbjct: 217 GRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFP 254

BLAST of PI0000993 vs. NCBI nr
Match: XP_008465121.1 (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 7.4e-53
Identity = 113/159 (71.07%), Postives = 124/159 (77.99%), Query Frame = 0

Query: 2   NDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSIF 61
           NDCETVALT  T+D+ KNG P+KMTD  SFT+PCSI  MDLG  LCDLGASINLMPLSIF
Sbjct: 8   NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 67

Query: 62  KKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPIIL 121
           KKLE+ E             SIAK EGKIED+LV VDKFLF ADF+ILDYEA++EVPII 
Sbjct: 68  KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIF 127

Query: 122 GRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSP 149
           GRPFLSTG  LIDVHQGELT+R ND EVKFNV NA+  P
Sbjct: 128 GRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFP 165

BLAST of PI0000993 vs. NCBI nr
Match: XP_030477929.1 (uncharacterized protein LOC115694963 [Cannabis sativa])

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-52
Identity = 106/160 (66.25%), Postives = 128/160 (80.00%), Query Frame = 0

Query: 1   MNDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSI 60
           + + ETVALT+  + + K+ +P K+ DPGSFT+PCSIGG D+GRALCDLGASINLMP+SI
Sbjct: 46  LGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSI 105

Query: 61  FKKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPII 120
           FKKL +GEA            S+A PEGKIEDVLV VDKF+FPADF+ILDYEADR+VPII
Sbjct: 106 FKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPII 165

Query: 121 LGRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSP 149
           LGRPFL+TGR LIDV  GELT+R+ND++V FNV NA+  P
Sbjct: 166 LGRPFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFP 205

BLAST of PI0000993 vs. NCBI nr
Match: XP_030478287.1 (uncharacterized protein LOC115695357 [Cannabis sativa])

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-52
Identity = 106/160 (66.25%), Postives = 128/160 (80.00%), Query Frame = 0

Query: 1   MNDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSI 60
           + + ETVALT+  + + K+ +P K+ DPGSFT+PCSIGG D+GRALCDLGASINLMP+SI
Sbjct: 67  LGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSI 126

Query: 61  FKKLELGEA------------SIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPII 120
           FKKL +GEA            S+A PEGKIEDVLV VDKF+FPADF+ILDYEADR+VPII
Sbjct: 127 FKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPII 186

Query: 121 LGRPFLSTGRVLIDVHQGELTLRLNDEEVKFNVANAVNSP 149
           LGRPFL+TGR LIDV  GELT+R+ND++V FNV NA+  P
Sbjct: 187 LGRPFLATGRTLIDVQNGELTMRVNDQKVTFNVFNAMRFP 226

BLAST of PI0000993 vs. NCBI nr
Match: KAA0035429.1 (uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK25723.1 uncharacterized protein E5676_scaffold862G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 109/148 (73.65%), Postives = 118/148 (79.73%), Query Frame = 0

Query: 1   MNDCETVALTQVTNDVFKNGVPEKMTDPGSFTMPCSIGGMDLGRALCDLGASINLMPLSI 60
           +ND ETVALTQ TND FKNGVPEKMTDP SFT+  S GGMDLG ALCDLGASINLMPLSI
Sbjct: 18  INDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLGCALCDLGASINLMPLSI 77

Query: 61  FKKLELGEASIAKPEGKIEDVLVMVDKFLFPADFVILDYEADREVPIILGRPFLSTGRVL 120
           FKK+ +G       EGKIEDVLV VDKFLF  DFVILDY+ADR+VPIILGRPFLST   L
Sbjct: 78  FKKVGIG-------EGKIEDVLVKVDKFLFSEDFVILDYKADRKVPIILGRPFLSTSCTL 137

Query: 121 IDVHQGELTLRLNDEEVKFNVANAVNSP 149
           I VHQGELT+  NDEE+KFNV   +  P
Sbjct: 138 IGVHQGELTMHFNDEEIKFNVVKPMKFP 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VJ953.6e-5371.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CN553.6e-5371.07uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=... [more]
A0A5D3DPZ27.5e-5173.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DY392.4e-4963.69uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CPJ34.1e-4963.13uncharacterized protein LOC111012947 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
Match NameE-valueIdentityDescription
KAA0067858.17.4e-5371.07uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa][more]
XP_008465121.17.4e-5371.07PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
XP_030477929.16.3e-5266.25uncharacterized protein LOC115694963 [Cannabis sativa][more]
XP_030478287.16.3e-5266.25uncharacterized protein LOC115695357 [Cannabis sativa][more]
KAA0035429.11.5e-5073.65uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK2... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 10..146
e-value: 2.0E-24
score: 87.8
NoneNo IPR availablePANTHERPTHR33067:SF28SUBFAMILY NOT NAMEDcoord: 1..147
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 1..147
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 33..114
e-value: 7.27589E-12
score: 56.1908

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000993.1PI0000993.1mRNA