PI0000916 (gene) Melon (PI 482460) v1

Overview


Name	PI0000916
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	chr04: 26601262 .. 26601468 (+)
RNA-Seq Expression	PI0000916
Synteny	PI0000916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTAGTAGTGGACAACATAGTGAAACTAGCCCTAGCCTTAGTCTTAGTTCTAGTCCTTCTCCTTCCACTAATAACGCAACAAGAATTGTGAGTTCGAGTAGACCACCACTACCCAATAAGAAGAGAGCTAGAGCTACTAAGAAGACAACTTCCACTATATGGGATCACTTCACAAAATTGGAAGAGAATAGTTCTAGGTGA

mRNA sequence

ATGGAGAGTAGTAGTGGACAACATAGTGAAACTAGCCCTAGCCTTAGTCTTAGTTCTAGTCCTTCTCCTTCCACTAATAACGCAACAAGAATTGTGAGTTCGAGTAGACCACCACTACCCAATAAGAAGAGAGCTAGAGCTACTAAGAAGACAACTTCCACTATATGGGATCACTTCACAAAATTGGAAGAGAATAGTTCTAGGTGA

Coding sequence (CDS)

ATGGAGAGTAGTAGTGGACAACATAGTGAAACTAGCCCTAGCCTTAGTCTTAGTTCTAGTCCTTCTCCTTCCACTAATAACGCAACAAGAATTGTGAGTTCGAGTAGACCACCACTACCCAATAAGAAGAGAGCTAGAGCTACTAAGAAGACAACTTCCACTATATGGGATCACTTCACAAAATTGGAAGAGAATAGTTCTAGGTGA

Protein sequence

MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFTKLEENSSR

Homology

[Close]

BLAST of PI0000916 vs. ExPASy TrEMBL
Match: A0A5D3C9B8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001200 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

[Close]

BLAST of PI0000916 vs. ExPASy TrEMBL
Match: A0A5A7VIJ7 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00070 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

[Close]

BLAST of PI0000916 vs. ExPASy TrEMBL
Match: A0A5D3CAM1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00090 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

[Close]

BLAST of PI0000916 vs. ExPASy TrEMBL
Match: A0A5A7U8W5 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G00790 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1   MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
           ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 239 METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 298

Query: 61  KLEENSSR 69
           KLEENSSR
Sbjct: 299 KLEENSSR 304

[Close]

BLAST of PI0000916 vs. ExPASy TrEMBL
Match: A0A5D3D2K8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00240 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNN T  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

[Close]

BLAST of PI0000916 vs. NCBI nr
Match: KAA0067548.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

[Close]

BLAST of PI0000916 vs. NCBI nr
Match: KAA0050616.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1   MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
           ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 239 METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 298

Query: 61  KLEENSSR 69
           KLEENSSR
Sbjct: 299 KLEENSSR 304

[Close]

BLAST of PI0000916 vs. NCBI nr
Match: KAA0065439.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYK07824.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

[Close]

BLAST of PI0000916 vs. NCBI nr
Match: TYK08901.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-18
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNNAT  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNATGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

[Close]

BLAST of PI0000916 vs. NCBI nr
Match: TYK16769.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MESSSGQHSETSPSLSLSSSPSPSTNNATRIVSSSRPPLPNKKRARATKKTTSTIWDHFT 60
          ME+SSGQHSETSP  SLS SP+PSTNN T  VSSS+PPLP+KK+ RATKKTTST+WDHFT
Sbjct: 1  METSSGQHSETSP--SLSPSPAPSTNNTTGTVSSSKPPLPDKKKVRATKKTTSTVWDHFT 60

Query: 61 KLEENSSR 69
          KLEENSSR
Sbjct: 61 KLEENSSR 66

The following BLAST results are available for this feature:

BLAST of PI0000916 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9B8	3.7e-18	82.35	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7VIJ7	3.7e-18	82.35	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3CAM1	3.7e-18	82.35	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7U8W5	3.7e-18	82.35	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3D2K8	1.1e-17	80.88	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]

BLAST of PI0000916 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067548.1	7.6e-18	82.35	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0050616.1	7.6e-18	82.35	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0065439.1	7.6e-18	82.35	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK08901.1	7.6e-18	82.35	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK16769.1	2.2e-17	80.88	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of PI0000916 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000916.1	PI0000916.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity