PI0000842 (gene) Melon (PI 482460) v1

Overview


Name	PI0000842
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SNF1-related protein kinase regulatory subunit gamma-1-like
Location	chr11: 27555712 .. 27556083 (-)
RNA-Seq Expression	PI0000842
Synteny	PI0000842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCAAATAAAGGGCGGGCGGATGCTAACATGACAGTCGAAGGGAGCCAAGGGGCACTTACCTTGTCCGGTACACGTTCTCTAATTAACAGCAAACTTCCAAATATGCACACCCCAGTGACGAACAAGAGAGATGACACACTGAAGCAAGTAATGAAAACTATGGTAGAGACAAATAGCAGTATCAGCTTTCTTGTCAATAATTTGCAGCAAGCAACAGGGATACTTACTTTGCGAGACATGATAACTCAGTTTGCTCCTCCCTGTATGAATTCAACCATTCAAGGAGGTAGTTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGTACCATAATTTGTAACGAAACGTTTTAG

mRNA sequence

ATGGAACCAAATAAAGGGCGGGCGGATGCTAACATGACAGTCGAAGGGAGCCAAGGGGCACTTACCTTGTCCGGTACACGTTCTCTAATTAACAGCAAACTTCCAAATATGCACACCCCAGTGACGAACAAGAGAGATGACACACTGAAGCAAGTAATGAAAACTATGGTAGAGACAAATAGCAGTATCAGCTTTCTTGTCAATAATTTGCAGCAAGCAACAGGGATACTTACTTTGCGAGACATGATAACTCAGTTTGCTCCTCCCTGTATGAATTCAACCATTCAAGGAGGTAGTTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGTACCATAATTTGTAACGAAACGTTTTAG

Coding sequence (CDS)

ATGGAACCAAATAAAGGGCGGGCGGATGCTAACATGACAGTCGAAGGGAGCCAAGGGGCACTTACCTTGTCCGGTACACGTTCTCTAATTAACAGCAAACTTCCAAATATGCACACCCCAGTGACGAACAAGAGAGATGACACACTGAAGCAAGTAATGAAAACTATGGTAGAGACAAATAGCAGTATCAGCTTTCTTGTCAATAATTTGCAGCAAGCAACAGGGATACTTACTTTGCGAGACATGATAACTCAGTTTGCTCCTCCCTGTATGAATTCAACCATTCAAGGAGGTAGTTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGTACCATAATTTGTAACGAAACGTTTTAG

Protein sequence

MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETNSSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICNETF

Homology

[Close]

BLAST of PI0000842 vs. ExPASy TrEMBL
Match: A0A0A0LP97 (CBS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G248680 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.6e-58
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNKGR DA +TVEGSQGALTLSG RSLIN KLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 1   MEPNKGRVDAKITVEGSQGALTLSGARSLINGKLPNMHTPVTNKRDDTLKQVMKTMVETN 60

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 61  SSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120

Query: 121 ETF 124
           +TF
Sbjct: 121 KTF 123

[Close]

BLAST of PI0000842 vs. ExPASy TrEMBL
Match: A0A5D3DZD8 (SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00340 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNK R DANMTVEG QGALTLSG RSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 275 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 334

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQA GILTLRDMITQFAPPCMNS IQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 335 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 394

Query: 121 ETF 124
            TF
Sbjct: 395 RTF 397

[Close]

BLAST of PI0000842 vs. ExPASy TrEMBL
Match: A0A5A7TW16 (SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00620 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNK R DANMTVEG QGALTLSG RSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 268 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 327

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQA GILTLRDMITQFAPPCMNS IQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 328 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 387

Query: 121 ETF 124
            TF
Sbjct: 388 RTF 390

[Close]

BLAST of PI0000842 vs. ExPASy TrEMBL
Match: A0A1S4E308 (SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo OX=3656 GN=LOC103499686 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNK R DANMTVEG QGALTLSG RSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 277 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 336

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQA GILTLRDMITQFAPPCMNS IQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 337 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 396

Query: 121 ETF 124
            TF
Sbjct: 397 RTF 399

[Close]

BLAST of PI0000842 vs. ExPASy TrEMBL
Match: A0A6J1KYZ5 (SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499532 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.0e-42
Identity = 89/121 (73.55%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           ME +K +AD+N TV+G Q ALTLS  R L+  K+PNMHTPVT +RDDTLKQVMKTM ETN
Sbjct: 287 MESSKEQADSNPTVKGGQRALTLSSARPLVKCKVPNMHTPVTIRRDDTLKQVMKTMAETN 346

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVN+  QATGILT+ D+ITQFAPPCM+STIQGG FFESALE TGCQ+RNGT+ICN
Sbjct: 347 SSFSFLVNSSHQATGILTVGDVITQFAPPCMDSTIQGGGFFESALEHTGCQIRNGTLICN 406

Query: 121 E 122
           +
Sbjct: 407 K 407

[Close]

BLAST of PI0000842 vs. NCBI nr
Match: XP_031737382.1 (SNF1-related protein kinase regulatory subunit gamma-1 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNKGR DA +TVEGSQGALTLSG RSLIN KLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 334 MEPNKGRVDAKITVEGSQGALTLSGARSLINGKLPNMHTPVTNKRDDTLKQVMKTMVETN 393

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 394 SSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 453

Query: 121 ETF 124
           +TF
Sbjct: 454 KTF 456

[Close]

BLAST of PI0000842 vs. NCBI nr
Match: XP_016902612.1 (PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNK R DANMTVEG QGALTLSG RSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 277 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 336

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQA GILTLRDMITQFAPPCMNS IQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 337 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 396

Query: 121 ETF 124
            TF
Sbjct: 397 RTF 399

[Close]

BLAST of PI0000842 vs. NCBI nr
Match: KAA0045565.1 (SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNK R DANMTVEG QGALTLSG RSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 268 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 327

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQA GILTLRDMITQFAPPCMNS IQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 328 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 387

Query: 121 ETF 124
            TF
Sbjct: 388 RTF 390

[Close]

BLAST of PI0000842 vs. NCBI nr
Match: TYK28828.1 (SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNK R DANMTVEG QGALTLSG RSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 275 MEPNKERGDANMTVEGRQGALTLSGERSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 334

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICN 120
           SS SFLVNNLQQA GILTLRDMITQFAPPCMNS IQGGSFFESALEQTGCQVRNGTIICN
Sbjct: 335 SSFSFLVNNLQQAMGILTLRDMITQFAPPCMNSAIQGGSFFESALEQTGCQVRNGTIICN 394

Query: 121 ETF 124
            TF
Sbjct: 395 RTF 397

[Close]

BLAST of PI0000842 vs. NCBI nr
Match: KGN61852.2 (hypothetical protein Csa_005954 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 106/112 (94.64%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MEPNKGRADANMTVEGSQGALTLSGTRSLINSKLPNMHTPVTNKRDDTLKQVMKTMVETN 60
           MEPNKGR DA +TVEGSQGALTLSG RSLIN KLPNMHTPVTNKRDDTLKQVMKTMVETN
Sbjct: 284 MEPNKGRVDAKITVEGSQGALTLSGARSLINGKLPNMHTPVTNKRDDTLKQVMKTMVETN 343

Query: 61  SSISFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQV 113
           SS SFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQV
Sbjct: 344 SSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQV 395

The following BLAST results are available for this feature:

BLAST of PI0000842 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP97	8.6e-58	94.31	CBS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G248680 PE=4 SV...	[more]
A0A5D3DZD8	2.1e-56	93.50	SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var....	[more]
A0A5A7TW16	2.1e-56	93.50	SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo var....	[more]
A0A1S4E308	2.1e-56	93.50	SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucumis melo OX=3...	[more]
A0A6J1KYZ5	3.0e-42	73.55	SNF1-related protein kinase regulatory subunit gamma-1-like OS=Cucurbita maxima ...	[more]

BLAST of PI0000842 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737382.1	1.8e-57	94.31	SNF1-related protein kinase regulatory subunit gamma-1 [Cucumis sativus]	[more]
XP_016902612.1	4.4e-56	93.50	PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis ...	[more]
KAA0045565.1	4.4e-56	93.50	SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. m...	[more]
TYK28828.1	4.4e-56	93.50	SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis melo var. m...	[more]
KGN61852.2	1.2e-50	94.64	hypothetical protein Csa_005954 [Cucumis sativus]	[more]

BLAST of PI0000842 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.580.10		coord: 8..99 e-value: 6.4E-6 score: 27.8
None	No IPR available	PANTHER	PTHR13780	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	coord: 11..120
None	No IPR available	PANTHER	PTHR13780:SF124	OS01G0633400 PROTEIN	coord: 11..120
None	No IPR available	CDD	cd02205	CBS_pair_SF	coord: 37..96 e-value: 2.57333E-4 score: 36.0684
None	No IPR available	SUPERFAMILY	54631	CBS-domain pair	coord: 35..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000842.1	PI0000842.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity