Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGCCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTTCTTCATACAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTTTTGTTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAAAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCATCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTTCTTCTTTAAAAGGTAAAAATAAAATTTCTGATTTTACCCCTTTTGTTCCTAACGCTCCTTTTCCTTCCAGATTAATTCCTAAAAAGAAAGAAACACCGAAGGAAGAAGAACTGTTGGAGATGTTTAGGAAAGTGCAAATAAACCTACCTCTACTCGATGCGATCCAACAAGTCCCGAGGTATGCGAAGTTCTTAAAAGAGTTATGCACAAACAAAAGGAAAATCAAGGAGAAAGCAATGGTAAGTCACAACGTTTCTGCTTTACTTAAAACTTCAATACCTGCAAAGCAAAACGACCCTGGTATGTTTTCTCTTCCTTGTATTATAGGAAATAGGAAAATTTCTAGTGCCATGTTAGACTTAGGAGCTTCTATTAATGTCATGCCGTATTCTGTTTTCAAAGATCTTGAATTAAATAATATGCAAAAAACAAATGTATGCATTCAACTTGCTGATAGATCTTTCATATCACCGCTAGGAATAGTTGAAGATGTGTTAGTAAAAGTTGACAAACTTATATTTCCTGCGGATTTTTATATTCTTGAAATGAATGATGCATGCATGAAACCTTCCCATTCAATTCTTCTAGGTAGACCTTTCCTTAAAACTGCCAAAGCTATCATAGATGTAGATAAAGGTTGCCTAAGTGTAGAATTCGATGGAGACATAGTGACATTTAATATTTTTGAATCCATGAAATTCCCTGATGAATGCTTCTCTGTATGCTTCTTGCAAATACATGAAAATTTTGAACAAATTCCTATAATAGAACAATTTGCCAACTTAGATTTAGAAGAAATAGAAGAAGACATTTGTTTGAATGAATTAAACAAAGAAGAAGAAATTGTAGAACTAGAAAATGATGAAGAAATAAACTTTGAAGGAATAGATCCTAATTCAATTTCTTTTTCTCCACAGGAACCAAGGATTGA
mRNA sequence
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGCCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTTCTTCATACAATCAAGCAAAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCATCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTTCTTCTTTAAAAGGAACCAAGGATTGA
Coding sequence (CDS)
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGCCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTTCTTCATACAATCAAGCAAAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCATCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTTCTTCTTTAAAAGGAACCAAGGATTGA
Protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQAKMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLLIDENKKKEENKENNASSSSLKGTKD
Homology
BLAST of PI0000768 vs. ExPASy TrEMBL
Match:
A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)
HSP 1 Score: 199.9 bits (507), Expect = 8.1e-48
Identity = 108/184 (58.70%), Postives = 129/184 (70.11%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N +R+YDPHGNTYN GWRDNP
Sbjct: 56 MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S NQ +M+QLT ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKLPAQPDH NVSAISLRSGKIL P + E+KV S L +N+ KEE E N+SSS+
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNSSSSNS 235
BLAST of PI0000768 vs. ExPASy TrEMBL
Match:
A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)
HSP 1 Score: 196.1 bits (497), Expect = 1.2e-46
Identity = 106/184 (57.61%), Postives = 127/184 (69.02%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDPHGNTYN+GWRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S NQ +M+QLT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKL AQPDHANVS ISLRS KIL P + E+KV S P L +N+ KEE E N S S+
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180
BLAST of PI0000768 vs. ExPASy TrEMBL
Match:
A0A5A7VE49 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00600 PE=4 SV=1)
HSP 1 Score: 194.5 bits (493), Expect = 3.4e-46
Identity = 106/184 (57.61%), Postives = 129/184 (70.11%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVCGL+GHPNDK P+++E+ N +R+YDPHGNTYN+GWRDNP
Sbjct: 33 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
LRWGN+NQ+ QA +S NQ +M+QLT AISK++GK
Sbjct: 93 KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKLPAQP+HANVSAISLRSGKIL P + E+KV S L +N+ KEEN E N S S++
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEENVETNPSPSNI 212
BLAST of PI0000768 vs. ExPASy TrEMBL
Match:
A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 1.7e-45
Identity = 105/183 (57.38%), Postives = 127/183 (69.40%), Query Frame = 0
Query: 2 TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPN 61
TTLLTSFVQG +KV KCGVCGL+GH N+KCP+++E+ N +R+YDPH NTYN+GWRDNPN
Sbjct: 209 TTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPN 268
Query: 62 LRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGKG 121
LRWGN+NQ+ TQA +S NQ +M+QLT AISK++GKG
Sbjct: 269 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 328
Query: 122 KLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLK 161
KLPAQ DHANVSAISLRSGKIL P + E+KV S P L +N+ KEE E N S S+ K
Sbjct: 329 KLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388
BLAST of PI0000768 vs. ExPASy TrEMBL
Match:
A0A5A7V0L2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00850 PE=4 SV=1)
HSP 1 Score: 190.3 bits (482), Expect = 6.4e-45
Identity = 105/184 (57.07%), Postives = 127/184 (69.02%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MTT LTSFVQG +KV KCGVCGL+GH NDKCP ++E+ N +R+Y+ GNTYN+GWRDNP
Sbjct: 1 MTTFLTSFVQGTPLKVTKCGVCGLVGHSNDKCPKVIEDVNIVRRYNLQGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA +S NQ +M+Q+T AISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPSTSSNQGTNLKDIIKALATNNVSFQQEMKRQMTQITTAISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPSEE-KVPSNPDLLIDENKKKEENKENNASSSSL 161
GKLPAQP+HANVSAISLRSGKIL P +EE KV S P L +N+ KEE E N SSS+
Sbjct: 121 GKLPAQPNHANVSAISLRSGKILDSPATEEKKVTSKPLPLNSKNEFKEEKVETNPSSSNS 180
BLAST of PI0000768 vs. NCBI nr
Match:
XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])
HSP 1 Score: 199.9 bits (507), Expect = 1.7e-47
Identity = 108/184 (58.70%), Postives = 129/184 (70.11%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N +R+YDPHGNTYN GWRDNP
Sbjct: 56 MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S NQ +M+QLT ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKLPAQPDH NVSAISLRSGKIL P + E+KV S L +N+ KEE E N+SSS+
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNSSSSNS 235
BLAST of PI0000768 vs. NCBI nr
Match:
ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 198.0 bits (502), Expect = 6.3e-47
Identity = 108/184 (58.70%), Postives = 130/184 (70.65%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVC L+GHPNDKCP+++E+ N +RKYDP+GNTYN+GWRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S NQ +M+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKLPAQPD+ANVSAISLRSGKIL P + E+KV S L +N+ KEE E N S S+
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEEKVETNLSPSNS 236
BLAST of PI0000768 vs. NCBI nr
Match:
XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])
HSP 1 Score: 196.1 bits (497), Expect = 2.4e-46
Identity = 106/184 (57.61%), Postives = 127/184 (69.02%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDPHGNTYN+GWRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S NQ +M+QLT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKL AQPDHANVS ISLRS KIL P + E+KV S P L +N+ KEE E N S S+
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180
BLAST of PI0000768 vs. NCBI nr
Match:
KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 196.1 bits (497), Expect = 2.4e-46
Identity = 106/184 (57.61%), Postives = 127/184 (69.02%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDPHGNTYN+GWRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S NQ +M+QLT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKL AQPDHANVS ISLRS KIL P + E+KV S P L +N+ KEE E N S S+
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180
BLAST of PI0000768 vs. NCBI nr
Match:
KAA0051064.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 195.3 bits (495), Expect = 4.1e-46
Identity = 108/184 (58.70%), Postives = 127/184 (69.02%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNP 60
MT+LLTSFVQG +KV KCGVCGL+GHPNDKCP ++E+ N R+YDPHGNTYN+GWRDNP
Sbjct: 1 MTSLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPKMIEDVNIFRRYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSYNQA-----------------------KMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S NQ +M+QLT AISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQCTNLEDIIKALATNTLSFEQEMKQQMTQLTTAISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSL 161
GKL AQPDHANVSAISLRSGKIL + E+K+ S P L EN KEE E N S S+
Sbjct: 121 GKLSAQPDHANVSAISLRSGKILDTSTTKEKKITSKPLPLNSEN--KEEKVEKNPSPSNS 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CQU8 | 8.1e-48 | 58.70 | uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... | [more] |
A0A1S4E3R2 | 1.2e-46 | 57.61 | uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=... | [more] |
A0A5A7VE49 | 3.4e-46 | 57.61 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7VQ60 | 1.7e-45 | 57.38 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7V0L2 | 6.4e-45 | 57.07 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
XP_008465649.1 | 1.7e-47 | 58.70 | PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo] | [more] |
ADN33993.1 | 6.3e-47 | 58.70 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
XP_016902871.1 | 2.4e-46 | 57.61 | PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo] | [more] |
KAA0051761.1 | 2.4e-46 | 57.61 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos... | [more] |
KAA0051064.1 | 4.1e-46 | 58.70 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |