PI0000611 (gene) Melon (PI 482460) v1

Overview


Name	PI0000611
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Glycine-rich RNA-binding protein
Location	chr12: 765086 .. 766950 (-)
RNA-Seq Expression	PI0000611
Synteny	PI0000611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGGCGTCTGTGCAATAATTCCTCATCCGTATCGAAGGCTTAGGGTTTAAGGTCGACTCTGAAAGAAAGGAAGAAGAGAACGAACAAAGGTTTTCTCATTTCCATTTCCTTTTCATTTCATTTCATTTTCTTTTCTTGTAATGATTCTAATTCGTATTCTTGTGTTTCTGTATCTTTTTGTTCTTCGTTGTGGATTTTGATTGCTTCTGTTTTGATCTTTTGTCGTTCTGTGTAGACATATTTTGTTTGTTTATTTGAAGAAATATAAAGCTTATTCTCCTGACTGAACTTACATATGTTCTGATTTGGAGGTTTGTTTCATTCTTCTTTTGTGTTTTATGTATATTTTCGATTTCGAAAGTTAAGACTTCCACTGTAACGTTTTGGGTACATATGCTCTGCTTAAGAATGATTCCGTTCGTTCTCCAGTGTTCTCTTGCTCCGGTTGGGACGTTTTTAATTTGATATCTCTCTCTAGAATGTCTAATCAAAGCGTGCATGAGAACACAAATTAATTTATGAGTGTAAAGATTAGCTGTTTTGGGCATTAGCTAGTTTGCTGGCATGTTTCCACAAATTTTGTTTGTTTATCTGTTTATTGTGGATTATACAGTAGTACCTAAAACTTTCTTTTTGATTGTGGAGTTAATGTTACATTGGAAGTTCAAAATATTTGCAGGTGCTGTATTATCTTGGGCAACTACTTTTTGTTCCCTACGGAATTTAATTTTATTTTCTGGGTAATTCTTTCAGGTCGTTAACATGGCTTTTCTCAGTAAAGTTGGAAAGATATTTAGTCAGAGTTCTTCATCAGGGATCGGTTCACATTTGCAGCCTTCCAAGCTGTCTGTCTTTCAAACTCTTAGATTCATGTCGGGTTCGAAAGTTTTTGTTGGAGGTTAGGTTAAATCCAGTTCTTTTGTTCTTTCTTACACCTTGGTAATCCTTTAGAACTTTCCCTGACATTCATTGCTTTGTGTACTGTAGGCCTTTCATACGGTACGGATGACCAAAGGCTGACTGAAACGTTCAACAAGTATGGGGAAGTAGTTGAAGGTGTGCCACTTATCTAACTAAGCTTTTTTGAACATGAAAGCTAAATTTTATATTTTAGTATTACAACTATTGCTCATCATTCGTTTTGGGGAAATTGAATTACATTTAAACTTTCTGTAAGAACAGGAGTATTCGTGGGGGATGTCCTCTCTTAGTTGGTGTTGAGTGAAAGAATTTGAATTTTTTTTAATGTTTATCTTTGTCTTAGCGAAAGTGATCACGGATCGTGACACTGGTAGATCTAGAGGTTTTGGGTTTGTCACTTTCAGTGCCAATGAAGAAGCTTCTAGTGCTATTCAAGCTTTGGATGGACAGGTAAAAAGTCAGCATGGCATTGCTATGAGTAGTTTGGTGATCTTTGTAGTTCTGTTGTGGATTATATTTACTGTTTTCCTTACATTGTTCATTTTTTGTAATCAGGATCTCGATGGTCGTCGCATTAGATGCAACTATGCAACTGAAAGGCCTTCTGGTGGCTTTGGCGGCGGCGGCGTCGGCTATGGTGGTGGTGGCCGCTATGGCGGCGGTGGCGGTTATGGTGGAGGTGGTTATGGTGGTGAGGACAAAAACGATGACTTTGGCAATAGGGCTTGAAGGAACTTATCCAATGTTTCAACAAATGGCTTTTTAAGTGTAATGGCTTATGCGTCCTTGTACCGCCGGTTTATATCTTTTGGACATGTTCTTCAATTTTGAAGATAATTCGTTTTGATTCATAATCATCAGTGCCCTTGCGTAGGATGTGAGAATTGAATGAACTACCCCTTCCTTCTTGAAGAAATCAAAAACTCTTCTCTTACGTAAA

mRNA sequence

AAAAAAGGCGTCTGTGCAATAATTCCTCATCCGTATCGAAGGCTTAGGGTTTAAGGTCGACTCTGAAAGAAAGGAAGAAGAGAACGAACAAAGGTCGTTAACATGGCTTTTCTCAGTAAAGTTGGAAAGATATTTAGTCAGAGTTCTTCATCAGGGATCGGTTCACATTTGCAGCCTTCCAAGCTGTCTGTCTTTCAAACTCTTAGATTCATGTCGGGTTCGAAAGTTTTTGTTGGAGGCCTTTCATACGGTACGGATGACCAAAGGCTGACTGAAACGTTCAACAAGTATGGGGAAGTAGTTGAAGCGAAAGTGATCACGGATCGTGACACTGGTAGATCTAGAGGTTTTGGGTTTGTCACTTTCAGTGCCAATGAAGAAGCTTCTAGTGCTATTCAAGCTTTGGATGGACAGGATCTCGATGGTCGTCGCATTAGATGCAACTATGCAACTGAAAGGCCTTCTGGTGGCTTTGGCGGCGGCGGCGTCGGCTATGGTGGTGGTGGCCGCTATGGCGGCGGTGGCGGTTATGGTGGAGGTGGTTATGGTGGTGAGGACAAAAACGATGACTTTGGCAATAGGGCTTGAAGGAACTTATCCAATGTTTCAACAAATGGCTTTTTAAGTGTAATGGCTTATGCGTCCTTGTACCGCCGGTTTATATCTTTTGGACATGTTCTTCAATTTTGAAGATAATTCGTTTTGATTCATAATCATCAGTGCCCTTGCGTAGGATGTGAGAATTGAATGAACTACCCCTTCCTTCTTGAAGAAATCAAAAACTCTTCTCTTACGTAAA

Coding sequence (CDS)

ATGGCTTTTCTCAGTAAAGTTGGAAAGATATTTAGTCAGAGTTCTTCATCAGGGATCGGTTCACATTTGCAGCCTTCCAAGCTGTCTGTCTTTCAAACTCTTAGATTCATGTCGGGTTCGAAAGTTTTTGTTGGAGGCCTTTCATACGGTACGGATGACCAAAGGCTGACTGAAACGTTCAACAAGTATGGGGAAGTAGTTGAAGCGAAAGTGATCACGGATCGTGACACTGGTAGATCTAGAGGTTTTGGGTTTGTCACTTTCAGTGCCAATGAAGAAGCTTCTAGTGCTATTCAAGCTTTGGATGGACAGGATCTCGATGGTCGTCGCATTAGATGCAACTATGCAACTGAAAGGCCTTCTGGTGGCTTTGGCGGCGGCGGCGTCGGCTATGGTGGTGGTGGCCGCTATGGCGGCGGTGGCGGTTATGGTGGAGGTGGTTATGGTGGTGAGGACAAAAACGATGACTTTGGCAATAGGGCTTGA

Protein sequence

MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETFNKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERPSGGFGGGGVGYGGGGRYGGGGGYGGGGYGGEDKNDDFGNRA

Homology

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BLAST of PI0000611 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-37
Identity = 93/153 (60.78%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSK G I  Q+++  + + +  S  S+FQ +R MS SK+F+GG++Y  D+  L E F
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
            KYGEVV+ +VI DR+TGRSRGFGFVTF+++E ASSAIQALDG+DL GR ++ NYA +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 S-GGFGGGGVGYGGGGRYGGGGGYGG--GGYGG 151
           S GGFGGGG G GGGG YGG GGYGG  GGYGG
Sbjct: 121 SGGGFGGGGYG-GGGGGYGGSGGYGGGAGGYGG 152

[Close]

BLAST of PI0000611 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.8e-35
Identity = 104/182 (57.14%), Postives = 123/182 (67.58%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVG++FSQ+S     SH+  S  S+ Q++R MS SK+FVGG+SY TD+  L E F
Sbjct: 1   MAFLSKVGRLFSQTS-----SHVTASS-SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
           +KYGEVV+AK+I DR+TGRSRGF FVTF++ EEAS+A+Q LDGQDL GRRIR NYATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 121 SG----GFGGGGVGYG---------GGGRYGGGGGYGG--------GGYGGEDKNDDFGN 162
           SG    GFGG G GYG          GG  GG GGYGG        GG GG   N  +G 
Sbjct: 121 SGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGG 175

[Close]

BLAST of PI0000611 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.8e-27
Identity = 83/160 (51.88%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAF +K+G +  Q+    I S+      S+  +LR MS +K+F+GGLS+GTDD  L + F
Sbjct: 1   MAFCNKLGGLLRQN----ISSNGNVPVTSMLGSLRLMS-TKLFIGGLSWGTDDASLRDAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
             +G+VV+AKVI DR+TGRSRGFGFV F+    A++AI  +DG++L+GR IR N A +RP
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 S--------GGFGGGGVGY--GGGGRYGGGGGYGGGGYGG 151
           S        GG+ GGG GY  GGGG  GGGGGYGGGG GG
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGG 155

[Close]

BLAST of PI0000611 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.8e-27
Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAF +K+  I  Q    G+         S+  +LR+MS SK+FVGGLS+GTDD  L + F
Sbjct: 1   MAFCNKLSGILRQ----GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATER- 120
             +GEV EA VI DR+TGRSRGFGFV+FS  + A++AI+ +DG++L+GR+IR N ATER 
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 --PSGGFGGGGVGYGGGGRYGGGGGY 144
             P   FGGGG GYGG    GGGGGY
Sbjct: 121 SAPRSSFGGGG-GYGG----GGGGGY 136

[Close]

BLAST of PI0000611 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.6e-27
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 41  KVFVGGLSYGTDDQRLTETFNKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQA 100
           + FVGGL + TDDQ L   F+KYG+V+++K+ITDR+TGRSRGFGFVTF+++E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 101 LDGQDLDGRRIRCNYATERPS---GGFGGGGVGYGGGGRYGGGGGY--GGGGYGG 151
           ++GQDLDGR I  N A  R S   GGFGGGG GYGG  R GGGGGY  GGGGYGG
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGG 121

[Close]

BLAST of PI0000611 vs. ExPASy TrEMBL
Match: A0A0A0LQL8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.0e-58
Identity = 136/171 (79.53%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGKIFSQSS+SGI SH QPS LSVFQTLRFMS SKVFVGGLSYGTDDQRLTE F
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
            KYGEVVEA+VI DRDTGRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIRC+YAT+R 
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 SGGFGGGGVGYGGGGRYG-----------GGGGYGGGGYGGEDKNDDFGNR 161
           SGG GGGG GYGGGG YG           GGGGYGGGGYGG    DDF +R
Sbjct: 121 SGG-GGGGGGYGGGGGYGGGGYGGGRGGYGGGGYGGGGYGGGGGGDDFADR 170

[Close]

BLAST of PI0000611 vs. ExPASy TrEMBL
Match: A0A1S3BNP0 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103491813 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.9e-55
Identity = 131/165 (79.39%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGK+FS SS+SGI SHLQP   SVFQT+R MS SKVFVGGLSY TDDQRLTETF
Sbjct: 1   MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
           NKYGEVVEA+VITDRD+GRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIRC+YATER 
Sbjct: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120

Query: 121 SGGFG-GGGVGYGGGGRYGGGGGYGGGGYGG---EDKNDDFGNRA 162
           SGG G GGG GYGGGG  GGGGGYGGGGYGG      ++ FG++A
Sbjct: 121 SGGGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 162

[Close]

BLAST of PI0000611 vs. ExPASy TrEMBL
Match: A0A5D3BIN3 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001370 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.9e-55
Identity = 131/165 (79.39%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGK+FS SS+SGI SHLQP   SVFQT+R MS SKVFVGGLSY TDDQRLTETF
Sbjct: 36  MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 95

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
           NKYGEVVEA+VITDRD+GRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIRC+YATER 
Sbjct: 96  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 155

Query: 121 SGGFG-GGGVGYGGGGRYGGGGGYGGGGYGG---EDKNDDFGNRA 162
           SGG G GGG GYGGGG  GGGGGYGGGGYGG      ++ FG++A
Sbjct: 156 SGGGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 197

[Close]

BLAST of PI0000611 vs. ExPASy TrEMBL
Match: A0A6J1C734 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111009002 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 125/165 (75.76%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGKIFSQSS+  IGS L+P   S+FQT+RFMS SKVFVGGLSYGTDDQ L E F
Sbjct: 1   MAFLSKVGKIFSQSSTR-IGSDLRP---SIFQTIRFMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
            KYG+VVEA+VI DRDTGRSRGFGFVTF+ANEEASSAIQALDGQDLDGRRIR N+ATER 
Sbjct: 61  TKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERS 120

Query: 121 SGGFGGGGVGYGGGG-------RYGGGGGY--GGGGYGGEDKNDD 157
            GGFGGGG GYGGGG        YGGGGGY  GGGGYG     +D
Sbjct: 121 RGGFGGGGGGYGGGGYGGGGNAGYGGGGGYGRGGGGYGSSYAAND 161

[Close]

BLAST of PI0000611 vs. ExPASy TrEMBL
Match: A0A6J1ECL7 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111431328 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.8e-47
Identity = 112/145 (77.24%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGKIFS+SS+S I S LQPSKLS+FQ++R MS SKVFVGGLSYGTDDQ L E F
Sbjct: 1   MAFLSKVGKIFSKSSASMIRSDLQPSKLSIFQSIRLMSSSKVFVGGLSYGTDDQSLKEAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
           +KYGEVVEA+VITDRDTGRSRGFGFVTF+ANEEASSAIQALDGQDL GR IR N+ATER 
Sbjct: 61  DKYGEVVEARVITDRDTGRSRGFGFVTFTANEEASSAIQALDGQDLHGRNIRVNFATERS 120

Query: 121 --SGGFGGGGVGYGGGGRYGGGGGY 144
              GGF GG  GY     Y GGGGY
Sbjct: 121 RGGGGFDGGSSGYNRSSSYQGGGGY 145

[Close]

BLAST of PI0000611 vs. NCBI nr
Match: XP_004137435.1 (glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.0e-57
Identity = 136/171 (79.53%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGKIFSQSS+SGI SH QPS LSVFQTLRFMS SKVFVGGLSYGTDDQRLTE F
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
            KYGEVVEA+VI DRDTGRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIRC+YAT+R 
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 SGGFGGGGVGYGGGGRYG-----------GGGGYGGGGYGGEDKNDDFGNR 161
           SGG GGGG GYGGGG YG           GGGGYGGGGYGG    DDF +R
Sbjct: 121 SGG-GGGGGGYGGGGGYGGGGYGGGRGGYGGGGYGGGGYGGGGGGDDFADR 170

[Close]

BLAST of PI0000611 vs. NCBI nr
Match: XP_008450169.1 (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo] >XP_008450224.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 131/165 (79.39%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGK+FS SS+SGI SHLQP   SVFQT+R MS SKVFVGGLSY TDDQRLTETF
Sbjct: 1   MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
           NKYGEVVEA+VITDRD+GRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIRC+YATER 
Sbjct: 61  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 120

Query: 121 SGGFG-GGGVGYGGGGRYGGGGGYGGGGYGG---EDKNDDFGNRA 162
           SGG G GGG GYGGGG  GGGGGYGGGGYGG      ++ FG++A
Sbjct: 121 SGGGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 162

[Close]

BLAST of PI0000611 vs. NCBI nr
Match: TYJ98936.1 (glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 131/165 (79.39%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGK+FS SS+SGI SHLQP   SVFQT+R MS SKVFVGGLSY TDDQRLTETF
Sbjct: 36  MAFLSKVGKVFSNSSASGIRSHLQP---SVFQTIRLMSSSKVFVGGLSYSTDDQRLTETF 95

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
           NKYGEVVEA+VITDRD+GRSRGFGFVTF A+E+ASSAIQALDGQDLDGRRIRC+YATER 
Sbjct: 96  NKYGEVVEARVITDRDSGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATERS 155

Query: 121 SGGFG-GGGVGYGGGGRYGGGGGYGGGGYGG---EDKNDDFGNRA 162
           SGG G GGG GYGGGG  GGGGGYGGGGYGG      ++ FG++A
Sbjct: 156 SGGGGYGGGGGYGGGGYSGGGGGYGGGGYGGGGYGGGSNGFGDKA 197

[Close]

BLAST of PI0000611 vs. NCBI nr
Match: XP_038895325.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 217.2 bits (552), Expect = 1.0e-52
Identity = 124/167 (74.25%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGKIFS++S+S IGS LQ S LS+FQT RFMSGS+VFVGGLSYGTDDQ L E F
Sbjct: 1   MAFLSKVGKIFSRNSASRIGSDLQASNLSIFQTFRFMSGSRVFVGGLSYGTDDQGLREEF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
            KYGEVVEAKV+ DRD+GRSRGFGFVTF+ANEEASSAIQALDGQ+L GRRIRCN+ATERP
Sbjct: 61  AKYGEVVEAKVVMDRDSGRSRGFGFVTFAANEEASSAIQALDGQELHGRRIRCNHATERP 120

Query: 121 ------------SGGFGGGGVGYGGGGRYGGGGGYGGGGYGGEDKND 156
                        GG+GGGG  YGGGG +G GGGYGGG YG ED ND
Sbjct: 121 RGGGGGYGGGGYGGGYGGGGGSYGGGGNFGSGGGYGGGKYGEEDDND 167

[Close]

BLAST of PI0000611 vs. NCBI nr
Match: XP_022137596.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 125/165 (75.76%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVGKIFSQSS+  IGS L+P   S+FQT+RFMS SKVFVGGLSYGTDDQ L E F
Sbjct: 1   MAFLSKVGKIFSQSSTR-IGSDLRP---SIFQTIRFMSSSKVFVGGLSYGTDDQSLREAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
            KYG+VVEA+VI DRDTGRSRGFGFVTF+ANEEASSAIQALDGQDLDGRRIR N+ATER 
Sbjct: 61  TKYGDVVEARVILDRDTGRSRGFGFVTFNANEEASSAIQALDGQDLDGRRIRVNFATERS 120

Query: 121 SGGFGGGGVGYGGGG-------RYGGGGGY--GGGGYGGEDKNDD 157
            GGFGGGG GYGGGG        YGGGGGY  GGGGYG     +D
Sbjct: 121 RGGFGGGGGGYGGGGYGGGGNAGYGGGGGYGRGGGGYGSSYAAND 161

[Close]

BLAST of PI0000611 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-38
Identity = 93/153 (60.78%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSK G I  Q+++  + + +  S  S+FQ +R MS SK+F+GG++Y  D+  L E F
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
            KYGEVV+ +VI DR+TGRSRGFGFVTF+++E ASSAIQALDG+DL GR ++ NYA +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 S-GGFGGGGVGYGGGGRYGGGGGYGG--GGYGG 151
           S GGFGGGG G GGGG YGG GGYGG  GGYGG
Sbjct: 121 SGGGFGGGGYG-GGGGGYGGSGGYGGGAGGYGG 152

[Close]

BLAST of PI0000611 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-36
Identity = 104/182 (57.14%), Postives = 123/182 (67.58%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAFLSKVG++FSQ+S     SH+  S  S+ Q++R MS SK+FVGG+SY TD+  L E F
Sbjct: 1   MAFLSKVGRLFSQTS-----SHVTASS-SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
           +KYGEVV+AK+I DR+TGRSRGF FVTF++ EEAS+A+Q LDGQDL GRRIR NYATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 121 SG----GFGGGGVGYG---------GGGRYGGGGGYGG--------GGYGGEDKNDDFGN 162
           SG    GFGG G GYG          GG  GG GGYGG        GG GG   N  +G 
Sbjct: 121 SGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGG 175

[Close]

BLAST of PI0000611 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-28
Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAF +K+  I  Q    G+         S+  +LR+MS SK+FVGGLS+GTDD  L + F
Sbjct: 1   MAFCNKLSGILRQ----GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATER- 120
             +GEV EA VI DR+TGRSRGFGFV+FS  + A++AI+ +DG++L+GR+IR N ATER 
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 --PSGGFGGGGVGYGGGGRYGGGGGY 144
             P   FGGGG GYGG    GGGGGY
Sbjct: 121 SAPRSSFGGGG-GYGG----GGGGGY 136

[Close]

BLAST of PI0000611 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-28
Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAF +K+  I  Q    G+         S+  +LR+MS SK+FVGGLS+GTDD  L + F
Sbjct: 1   MAFCNKLSGILRQ----GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATER- 120
             +GEV EA VI DR+TGRSRGFGFV+FS  + A++AI+ +DG++L+GR+IR N ATER 
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 --PSGGFGGGGVGYGGGGRYGGGGGY 144
             P   FGGGG GYGG    GGGGGY
Sbjct: 121 SAPRSSFGGGG-GYGG----GGGGGY 136

[Close]

BLAST of PI0000611 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-28
Identity = 83/160 (51.88%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 1   MAFLSKVGKIFSQSSSSGIGSHLQPSKLSVFQTLRFMSGSKVFVGGLSYGTDDQRLTETF 60
           MAF +K+G +  Q+    I S+      S+  +LR MS +K+F+GGLS+GTDD  L + F
Sbjct: 1   MAFCNKLGGLLRQN----ISSNGNVPVTSMLGSLRLMS-TKLFIGGLSWGTDDASLRDAF 60

Query: 61  NKYGEVVEAKVITDRDTGRSRGFGFVTFSANEEASSAIQALDGQDLDGRRIRCNYATERP 120
             +G+VV+AKVI DR+TGRSRGFGFV F+    A++AI  +DG++L+GR IR N A +RP
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 S--------GGFGGGGVGY--GGGGRYGGGGGYGGGGYGG 151
           S        GG+ GGG GY  GGGG  GGGGGYGGGG GG
Sbjct: 121 SAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGG 155

The following BLAST results are available for this feature:

BLAST of PI0000611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	2.8e-37	60.78	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	5.8e-35	57.14	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	5.8e-27	51.88	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LIS2	5.8e-27	53.42	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	7.6e-27	63.48	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]

BLAST of PI0000611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQL8	5.0e-58	79.53	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV...	[more]
A0A1S3BNP0	8.9e-55	79.39	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucumis melo OX=3656 G...	[more]
A0A5D3BIN3	8.9e-55	79.39	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1C734	4.3e-49	75.76	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A6J1ECL7	6.8e-47	77.24	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]

BLAST of PI0000611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137435.1	1.0e-57	79.53	glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus]	[more]
XP_008450169.1	1.8e-54	79.39	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like [Cucumis melo]...	[more]
TYJ98936.1	1.8e-54	79.39	glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]	[more]
XP_038895325.1	1.0e-52	74.25	glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida]	[more]
XP_022137596.1	8.8e-49	75.76	glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]	[more]

BLAST of PI0000611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	2.0e-38	60.78	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	4.1e-36	57.14	glycine-rich RNA-binding protein 5	[more]
AT3G23830.1	4.1e-28	53.42	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	4.1e-28	53.42	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	4.1e-28	51.88	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..114 e-value: 7.6E-29 score: 111.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..112 e-value: 1.8E-22 score: 78.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..118 score: 21.821417
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 41..114 e-value: 1.8E-4 score: 30.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..154 e-value: 8.3E-35 score: 121.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..161
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 1..155
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..155
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 37..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000611.1	PI0000611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding