Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGTTTGATCTGCTTATTCGTGAAGCTGACTTAGTTGAACCGCCAGTTCAAGGTAACTGGTTCACTTGGACGAGTAAGGTATGTGGTTCGAGTTGGTTGAGACATCTCAATCGTATTTTGGTTAATGAGGAGTGGTTATCTGTCTGGCCTAGTTTGCGGGTCTCTATCCTATCATGGGGTATTTCTGATCATTCCCCTATTTTATTCTATCTTGGCATTGAGCAGAGTGGGAGAGTTGTGTCGTTTTGTTTCTTTAATCATTGGGTGGAGGATCCTTCATTCAGTGATGTTGTGTCTTCGGTGCGTGTGAGGAGGCAAGGTGTTTCTCCGCTAGTGAGTCTCATGTGAAATTTACATGACCCTAAGCCTGCCCTTTGTAGACATTTTGGTAGACACATTTGGGGCCTTAGTGAGGATGTTCACAATTAAAGAGTCTATGGATAGGGCCCAACGAGAGGTGAAGCGGGATCTCGAGTCTGTTGAGGTGAACCGTCAAACTGGGCTTGCCACTAAGGCTTTCTGGTCGGCTATTCATTTAGAAGAAGCATCCCTTCATCAGAAATCTCGGATTAGGTGGTTGGAGCTTGGTGATTAG
mRNA sequence
ATGGAGGAGTTTGATCTGCTTATTCGTGAAGCTGACTTAGTTGAACCGCCAGTTCAAGGTAACTGGTTCACTTGGACGAGTAAGAGTGGGAGAGTTGTGTCGTTTTGTTTCTTTAATCATTGGGTGGAGGATCCTTCATTCAGTGATGTTGTGTCTTCGGTGCGTGTGAGGAGGCAAGACACATTTGGGGCCTTAGTGAGGATGTTCACAATTAAAGAGTCTATGGATAGGGCCCAACGAGAGGTGAAGCGGGATCTCGAGTCTGTTGAGGTGAACCGTCAAACTGGGCTTGCCACTAAGGCTTTCTGGTCGGCTATTCATTTAGAAGAAGCATCCCTTCATCAGAAATCTCGGATTAGGTGGTTGGAGCTTGGTGATTAG
Coding sequence (CDS)
ATGGAGGAGTTTGATCTGCTTATTCGTGAAGCTGACTTAGTTGAACCGCCAGTTCAAGGTAACTGGTTCACTTGGACGAGTAAGAGTGGGAGAGTTGTGTCGTTTTGTTTCTTTAATCATTGGGTGGAGGATCCTTCATTCAGTGATGTTGTGTCTTCGGTGCGTGTGAGGAGGCAAGACACATTTGGGGCCTTAGTGAGGATGTTCACAATTAAAGAGTCTATGGATAGGGCCCAACGAGAGGTGAAGCGGGATCTCGAGTCTGTTGAGGTGAACCGTCAAACTGGGCTTGCCACTAAGGCTTTCTGGTCGGCTATTCATTTAGAAGAAGCATCCCTTCATCAGAAATCTCGGATTAGGTGGTTGGAGCTTGGTGATTAG
Protein sequence
MEEFDLLIREADLVEPPVQGNWFTWTSKSGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQDTFGALVRMFTIKESMDRAQREVKRDLESVEVNRQTGLATKAFWSAIHLEEASLHQKSRIRWLELGD
Homology
BLAST of PI0000586 vs. ExPASy TrEMBL
Match:
A0A5D3DXQ8 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001370 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 84/151 (55.63%), Postives = 102/151 (67.55%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSKSGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQD 60
ME+FDL IR+ADLVEP VQGNWFTWTSK+ RVVSF FFNHW+EDPSF +VVS + R +
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392
Query: 61 T--------------------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQT 120
FG ++ + KE+MDRAQREVKR+ S ++RQ
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452
Query: 121 GLATKAFWSAIHLEEASLHQKSRIRWLELGD 127
GLAT+AFW+ + LEEASLHQK RIRWLELG+
Sbjct: 453 GLATEAFWTTVRLEEASLHQKFRIRWLELGN 483
BLAST of PI0000586 vs. ExPASy TrEMBL
Match:
A0A5A7U4M4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001420 PE=4 SV=1)
HSP 1 Score: 157.9 bits (398), Expect = 2.7e-35
Identity = 84/151 (55.63%), Postives = 102/151 (67.55%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSKSGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQD 60
ME+FDL IR+ADLVEP VQGNWFTWTSK+ RVVSF FFNHW+EDPSF +VVS + R +
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392
Query: 61 T--------------------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQT 120
FG ++ + KE+MDRAQREVKR+ S ++RQ
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452
Query: 121 GLATKAFWSAIHLEEASLHQKSRIRWLELGD 127
GLAT+AFW+ + LEEASLHQK RIRWLELG+
Sbjct: 453 GLATEAFWTKVRLEEASLHQKFRIRWLELGN 483
BLAST of PI0000586 vs. ExPASy TrEMBL
Match:
A0A5D3D5X6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00380 PE=4 SV=1)
HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 78/158 (49.37%), Postives = 96/158 (60.76%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSK------SGRVVSFCFFNHWVEDPSFSDVVSSV 60
ME+FDL IR+ DLVEP VQGNWFTWTSK + +VVSF FFNHWVEDPSF +VV+
Sbjct: 720 MEDFDLAIRDVDLVEPLVQGNWFTWTSKVQGFQLNSKVVSFRFFNHWVEDPSFIEVVAR- 779
Query: 61 RVRRQDTFGALVRMF--------------------------TIKESMDRAQREVKRDLES 120
R R + LV + K +MD AQR+V+R+ S
Sbjct: 780 RWSRHEGVSPLVSLMKNLHHLKPILRGRFGRHIKSLNEKVRIAKLAMDIAQRKVERNPMS 839
Query: 121 VEVNRQTGLATKAFWSAIHLEEASLHQKSRIRWLELGD 127
++RQ LAT+ FW+A+ LEEASL QKSRIRWL+LGD
Sbjct: 840 DVLSRQASLATETFWTAVRLEEASLRQKSRIRWLKLGD 876
BLAST of PI0000586 vs. ExPASy TrEMBL
Match:
A0A5A7V275 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00430 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 6.1e-27
Identity = 80/200 (40.00%), Postives = 101/200 (50.50%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSK-------------------------------- 60
ME+FDL IR+ADLVEP VQGNWFTWTSK
Sbjct: 318 MEDFDLAIRDADLVEPSVQGNWFTWTSKVHGSGMLRRLDRVLVNDAWLSAWPTMLVNVLP 377
Query: 61 -----------------SGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQDT---------- 120
+ +VVSF FFNHWVEDPSF +VV+ + R +
Sbjct: 378 WGISDHSPILFYPSFQLNSKVVSFRFFNHWVEDPSFIEVVARMWSRHEGVSPLVSLMRNL 437
Query: 121 ----------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQTGLATKAFWSAI 127
FG ++ + KE+MDRAQR+V+R+ S ++RQ LAT+ FW+A+
Sbjct: 438 HHLKPTLRRQFGRHIQSLSEEVHIAKEAMDRAQRDVERNSMSDVLSRQASLATETFWTAV 497
BLAST of PI0000586 vs. ExPASy TrEMBL
Match:
A0A1S3CRZ6 (uncharacterized protein LOC103504100 OS=Cucumis melo OX=3656 GN=LOC103504100 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 6.1e-27
Identity = 80/200 (40.00%), Postives = 101/200 (50.50%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSK-------------------------------- 60
ME+FDL IR+ADLVEP VQGNWFTWTSK
Sbjct: 335 MEDFDLAIRDADLVEPSVQGNWFTWTSKVHGSGMLRRLDRVLVNDAWLSAWPTMLVNVLP 394
Query: 61 -----------------SGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQDT---------- 120
+ +VVSF FFNHWVEDPSF +VV+ + R +
Sbjct: 395 WGISDHSPILFYPSFQLNSKVVSFRFFNHWVEDPSFIEVVARMWSRHEGVSPLVSLMRNL 454
Query: 121 ----------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQTGLATKAFWSAI 127
FG ++ + KE+MDRAQR+V+R+ S ++RQ LAT+ FW+A+
Sbjct: 455 HHLKPTLRRQFGRHIQSLSEEVHIAKEAMDRAQRDVERNSMSDVLSRQASLATETFWTAV 514
BLAST of PI0000586 vs. NCBI nr
Match:
TYK28312.1 (uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa])
HSP 1 Score: 158.3 bits (399), Expect = 4.3e-35
Identity = 84/151 (55.63%), Postives = 102/151 (67.55%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSKSGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQD 60
ME+FDL IR+ADLVEP VQGNWFTWTSK+ RVVSF FFNHW+EDPSF +VVS + R +
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392
Query: 61 T--------------------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQT 120
FG ++ + KE+MDRAQREVKR+ S ++RQ
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452
Query: 121 GLATKAFWSAIHLEEASLHQKSRIRWLELGD 127
GLAT+AFW+ + LEEASLHQK RIRWLELG+
Sbjct: 453 GLATEAFWTTVRLEEASLHQKFRIRWLELGN 483
BLAST of PI0000586 vs. NCBI nr
Match:
KAA0048521.1 (uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa])
HSP 1 Score: 157.9 bits (398), Expect = 5.7e-35
Identity = 84/151 (55.63%), Postives = 102/151 (67.55%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSKSGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQD 60
ME+FDL IR+ADLVEP VQGNWFTWTSK+ RVVSF FFNHW+EDPSF +VVS + R +
Sbjct: 333 MEDFDLAIRDADLVEPSVQGNWFTWTSKNRRVVSFRFFNHWMEDPSFIEVVSRMWGRNEG 392
Query: 61 T--------------------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQT 120
FG ++ + KE+MDRAQREVKR+ S ++RQ
Sbjct: 393 VSPLVSLIRNLQHLKSTIRRHFGRHIQSLSEEVRNAKEAMDRAQREVKRNPMSDVLSRQA 452
Query: 121 GLATKAFWSAIHLEEASLHQKSRIRWLELGD 127
GLAT+AFW+ + LEEASLHQK RIRWLELG+
Sbjct: 453 GLATEAFWTKVRLEEASLHQKFRIRWLELGN 483
BLAST of PI0000586 vs. NCBI nr
Match:
TYK18951.1 (uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa])
HSP 1 Score: 136.0 bits (341), Expect = 2.3e-28
Identity = 78/158 (49.37%), Postives = 96/158 (60.76%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSK------SGRVVSFCFFNHWVEDPSFSDVVSSV 60
ME+FDL IR+ DLVEP VQGNWFTWTSK + +VVSF FFNHWVEDPSF +VV+
Sbjct: 720 MEDFDLAIRDVDLVEPLVQGNWFTWTSKVQGFQLNSKVVSFRFFNHWVEDPSFIEVVAR- 779
Query: 61 RVRRQDTFGALVRMF--------------------------TIKESMDRAQREVKRDLES 120
R R + LV + K +MD AQR+V+R+ S
Sbjct: 780 RWSRHEGVSPLVSLMKNLHHLKPILRGRFGRHIKSLNEKVRIAKLAMDIAQRKVERNPMS 839
Query: 121 VEVNRQTGLATKAFWSAIHLEEASLHQKSRIRWLELGD 127
++RQ LAT+ FW+A+ LEEASL QKSRIRWL+LGD
Sbjct: 840 DVLSRQASLATETFWTAVRLEEASLRQKSRIRWLKLGD 876
BLAST of PI0000586 vs. NCBI nr
Match:
XP_008466769.1 (PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo])
HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 80/200 (40.00%), Postives = 101/200 (50.50%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSK-------------------------------- 60
ME+FDL IR+ADLVEP VQGNWFTWTSK
Sbjct: 335 MEDFDLAIRDADLVEPSVQGNWFTWTSKVHGSGMLRRLDRVLVNDAWLSAWPTMLVNVLP 394
Query: 61 -----------------SGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQDT---------- 120
+ +VVSF FFNHWVEDPSF +VV+ + R +
Sbjct: 395 WGISDHSPILFYPSFQLNSKVVSFRFFNHWVEDPSFIEVVARMWSRHEGVSPLVSLMRNL 454
Query: 121 ----------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQTGLATKAFWSAI 127
FG ++ + KE+MDRAQR+V+R+ S ++RQ LAT+ FW+A+
Sbjct: 455 HHLKPTLRRQFGRHIQSLSEEVHIAKEAMDRAQRDVERNSMSDVLSRQASLATETFWTAV 514
BLAST of PI0000586 vs. NCBI nr
Match:
KAA0059841.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK24796.1 reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 80/200 (40.00%), Postives = 101/200 (50.50%), Query Frame = 0
Query: 1 MEEFDLLIREADLVEPPVQGNWFTWTSK-------------------------------- 60
ME+FDL IR+ADLVEP VQGNWFTWTSK
Sbjct: 318 MEDFDLAIRDADLVEPSVQGNWFTWTSKVHGSGMLRRLDRVLVNDAWLSAWPTMLVNVLP 377
Query: 61 -----------------SGRVVSFCFFNHWVEDPSFSDVVSSVRVRRQDT---------- 120
+ +VVSF FFNHWVEDPSF +VV+ + R +
Sbjct: 378 WGISDHSPILFYPSFQLNSKVVSFRFFNHWVEDPSFIEVVARMWSRHEGVSPLVSLMRNL 437
Query: 121 ----------FGALVRMFT-----IKESMDRAQREVKRDLESVEVNRQTGLATKAFWSAI 127
FG ++ + KE+MDRAQR+V+R+ S ++RQ LAT+ FW+A+
Sbjct: 438 HHLKPTLRRQFGRHIQSLSEEVHIAKEAMDRAQRDVERNSMSDVLSRQASLATETFWTAV 497
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DXQ8 | 2.1e-35 | 55.63 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5A7U4M4 | 2.7e-35 | 55.63 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5D3D5X6 | 1.1e-28 | 49.37 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A5A7V275 | 6.1e-27 | 40.00 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18... | [more] |
| A0A1S3CRZ6 | 6.1e-27 | 40.00 | uncharacterized protein LOC103504100 OS=Cucumis melo OX=3656 GN=LOC103504100 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK28312.1 | 4.3e-35 | 55.63 | uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa] | [more] |
| KAA0048521.1 | 5.7e-35 | 55.63 | uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa] | [more] |
| TYK18951.1 | 2.3e-28 | 49.37 | uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa] | [more] |
| XP_008466769.1 | 1.3e-26 | 40.00 | PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo] | [more] |
| KAA0059841.1 | 1.3e-26 | 40.00 | reverse transcriptase [Cucumis melo var. makuwa] >TYK24796.1 reverse transcripta... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
