PI0000560 (gene) Melon (PI 482460) v1

Overview
NamePI0000560
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr01: 160434 .. 160643 (+)
RNA-Seq ExpressionPI0000560
SyntenyPI0000560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATTCCGAAAGAATCACCTCCTTCGGATCATCAATTAATGCTTTGTTCTGTGTGGTTGTGAGGATGGGGAAGAAGCGCCTAGAAGAAGCTAGGAATCCATCTCGGAATTTGGCGAGCTCGGTCATGCACATCTCTAAGGTGGGCGAAATCTTCATAAAAAGTGAGATTGGGAAGAGAAGAAGAAGAAGAAATAAATTAAATTAA

mRNA sequence

ATGGTGGATTCCGAAAGAATCACCTCCTTCGGATCATCAATTAATGCTTTGTTCTGTGTGGTTGTGAGGATGGGGAAGAAGCGCCTAGAAGAAGCTAGGAATCCATCTCGGAATTTGGCGAGCTCGGTCATGCACATCTCTAAGGTGGGCGAAATCTTCATAAAAAGTGAGATTGGGAAGAGAAGAAGAAGAAGAAATAAATTAAATTAA

Coding sequence (CDS)

ATGGTGGATTCCGAAAGAATCACCTCCTTCGGATCATCAATTAATGCTTTGTTCTGTGTGGTTGTGAGGATGGGGAAGAAGCGCCTAGAAGAAGCTAGGAATCCATCTCGGAATTTGGCGAGCTCGGTCATGCACATCTCTAAGGTGGGCGAAATCTTCATAAAAAGTGAGATTGGGAAGAGAAGAAGAAGAAGAAATAAATTAAATTAA

Protein sequence

MVDSERITSFGSSINALFCVVVRMGKKRLEEARNPSRNLASSVMHISKVGEIFIKSEIGKRRRRRNKLN
Homology
[Close]
BLAST of PI0000560 vs. ExPASy TrEMBL
Match: A0A0A0K2U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075560 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 1  MVDSERITS---FGSSIN-ALFC------------VVVRMGKKRLEEA-RNPSRNLASSV 60
          MVDSERITS    GSSI  ALFC            VVV +GKKRLEE  RN SRNLAS  
Sbjct: 1  MVDSERITSLGLLGSSIAIALFCLVGSWMDIWRRSVVVIVGKKRLEELDRNTSRNLASWF 60

Query: 61 MHISKVGEIFIKSEIGKRRRRR 66
          MHIS VGEIFIKSEIGK ++++
Sbjct: 61 MHISTVGEIFIKSEIGKEKKKK 82

[Close]
BLAST of PI0000560 vs. NCBI nr
Match: KGN43975.1 (hypothetical protein Csa_017687 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 1  MVDSERITS---FGSSIN-ALFC------------VVVRMGKKRLEEA-RNPSRNLASSV 60
          MVDSERITS    GSSI  ALFC            VVV +GKKRLEE  RN SRNLAS  
Sbjct: 1  MVDSERITSLGLLGSSIAIALFCLVGSWMDIWRRSVVVIVGKKRLEELDRNTSRNLASWF 60

Query: 61 MHISKVGEIFIKSEIGKRRRRR 66
          MHIS VGEIFIKSEIGK ++++
Sbjct: 61 MHISTVGEIFIKSEIGKEKKKK 82

The following BLAST results are available for this feature:
BLAST of PI0000560 vs.
Match NameE-valueIdentityDescription
BLAST of PI0000560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2U21.3e-1062.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075560 PE=4 SV=1[more]
BLAST of PI0000560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43975.12.6e-1062.20hypothetical protein Csa_017687 [Cucumis sativus][more]
BLAST of PI0000560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000560.1PI0000560.1mRNA