PI0000530 (gene) Melon (PI 482460) v1

Overview


Name	PI0000530
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr03: 16270345 .. 16270605 (-)
RNA-Seq Expression	PI0000530
Synteny	PI0000530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTGCTTCATATCCTACTAAAAGAAGGAAGGAGAATGATAAGAGTGTGAGTGGTAGCCATACCAAGATCGACAAAAGTTTCAGGTGTCGCGAGTGTGGGGGCTTTGATCATTTCCAAGCAGAGTCTCCAACCTTTTTAAAGACGCAAAAGAAGAGTTTTAACGTAACACTTTCTGATGATGAGTCGGATGCGAGTAGTGAAAATGAGGAGGACGGTTGTGCATTGCTAGGGTGCATTTTAGAAGAAGTGGTGTAG

mRNA sequence

ATGAGTTCTGCTTCATATCCTACTAAAAGAAGGAAGGAGAATGATAAGAGTGTGAGTGGTAGCCATACCAAGATCGACAAAAGTTTCAGGTGTCGCGAGTGTGGGGGCTTTGATCATTTCCAAGCAGAGTCTCCAACCTTTTTAAAGACGCAAAAGAAGAGTTTTAACGTAACACTTTCTGATGATGAGTCGGATGCGAGTAGTGAAAATGAGGAGGACGGTTGTGCATTGCTAGGGTGCATTTTAGAAGAAGTGGTGTAG

Coding sequence (CDS)

ATGAGTTCTGCTTCATATCCTACTAAAAGAAGGAAGGAGAATGATAAGAGTGTGAGTGGTAGCCATACCAAGATCGACAAAAGTTTCAGGTGTCGCGAGTGTGGGGGCTTTGATCATTTCCAAGCAGAGTCTCCAACCTTTTTAAAGACGCAAAAGAAGAGTTTTAACGTAACACTTTCTGATGATGAGTCGGATGCGAGTAGTGAAAATGAGGAGGACGGTTGTGCATTGCTAGGGTGCATTTTAGAAGAAGTGGTGTAG

Protein sequence

MSSASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEEVV

Homology

[Close]

BLAST of PI0000530 vs. ExPASy TrEMBL
Match: A0A5D3DG15 (MADS-box transcription factor PHERES 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00740 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 42/88 (47.73%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1  MSSASYPT---KRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNV 60
          MSS+S+ T    +R+ENDK+ +G++++ D+S +CR+C GF ++Q+E P FLK +K S  V
Sbjct: 1  MSSSSFRTFISNKRRENDKNSNGNNSRGDRSSKCRDCEGFGYYQSEYPHFLKRKKNSLVV 60

Query: 61 TLSDDESDASSENEEDGCALLGCILEEV 86
          TLSDD+   SS+ E+ G A +GC LE+V
Sbjct: 61 TLSDDKLSTSSDEEKGGRAFIGCTLEDV 88

[Close]

BLAST of PI0000530 vs. ExPASy TrEMBL
Match: A0A5D3DD57 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001180 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 10  RRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSE 69
           ++KE DKS S S  K D+SF+C EC GF H+QAE  TFLK + KS  VTLSD+ES + S+
Sbjct: 61  KQKEVDKSDSQS-LKNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSD 120

Query: 70  NEEDGCALLGCILE 84
            E  G  L+ C+LE
Sbjct: 121 GENFGTTLISCVLE 133

[Close]

BLAST of PI0000530 vs. ExPASy TrEMBL
Match: A0A5D3C137 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00680 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 10  RRKENDKSVS--GSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDAS 69
           RR + ++ +S      K DKS RC EC G+DHFQAE  T+LK +KK  N+TLSD+++ + 
Sbjct: 135 RRCDQNQGISYKDRFDKSDKSVRCHECEGYDHFQAECLTYLKRKKKILNITLSDEDTSSD 194

Query: 70  SENEEDGCALLGCILE 84
           +E E+ G AL+GC +E
Sbjct: 195 NECEDYGRALIGCKVE 210

[Close]

BLAST of PI0000530 vs. ExPASy TrEMBL
Match: A0A5D3E2N4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001080 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 23  TKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCIL 82
           T++   F+CREC GF H++AE PTFLK +KKS   TLS+++S + S+ EE   ALL C++
Sbjct: 126 TEVTVGFKCRECEGFRHYEAECPTFLKRKKKSLKNTLSNEKSSSDSDEEEKSRALLICVI 185

Query: 83  EE 85
           E+
Sbjct: 186 ED 187

[Close]

BLAST of PI0000530 vs. ExPASy TrEMBL
Match: A0A5D3BG63 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00170 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 3   SASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDD 62
           S  Y ++  ++ DKS      K DKS RC EC G+ HFQAE PT+LK +KKS N+TL D+
Sbjct: 206 SGGYDSQTNRDGDKS-----GKSDKSVRCHECEGYRHFQAEYPTYLKIKKKSVNITLLDE 265

Query: 63  ESDASSENEEDGCALLGCILE 84
           ++ + SE E+ G AL  C  E
Sbjct: 266 DTLSDSECEDYGRALNNCEAE 281

[Close]

BLAST of PI0000530 vs. NCBI nr
Match: KAA0036579.1 (MADS-box transcription factor PHERES 2-like [Cucumis melo var. makuwa] >TYK22641.1 MADS-box transcription factor PHERES 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 42/88 (47.73%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1  MSSASYPT---KRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNV 60
          MSS+S+ T    +R+ENDK+ +G++++ D+S +CR+C GF ++Q+E P FLK +K S  V
Sbjct: 1  MSSSSFRTFISNKRRENDKNSNGNNSRGDRSSKCRDCEGFGYYQSEYPHFLKRKKNSLVV 60

Query: 61 TLSDDESDASSENEEDGCALLGCILEEV 86
          TLSDD+   SS+ E+ G A +GC LE+V
Sbjct: 61 TLSDDKLSTSSDEEKGGRAFIGCTLEDV 88

[Close]

BLAST of PI0000530 vs. NCBI nr
Match: KAA0051793.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-10
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 10  RRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSE 69
           ++KE DKS S S  K D+SF+C EC GF H+QAE  TFLK + KS  VTLSD+ES + S+
Sbjct: 61  KQKEVDKSDSQS-LKNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSD 120

Query: 70  NEEDGCALLGCILE 84
            E  G  L+ C+LE
Sbjct: 121 GENFGTTLISCVLE 133

[Close]

BLAST of PI0000530 vs. NCBI nr
Match: KAA0047417.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 10  RRKENDKSVS--GSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDAS 69
           RR + ++ +S      K DKS RC EC G+DHFQAE  T+LK +KK  N+TLSD+++ + 
Sbjct: 135 RRCDQNQGISYKDRFDKSDKSVRCHECEGYDHFQAECLTYLKRKKKILNITLSDEDTSSD 194

Query: 70  SENEEDGCALLGCILE 84
           +E E+ G AL+GC +E
Sbjct: 195 NECEDYGRALIGCKVE 210

[Close]

BLAST of PI0000530 vs. NCBI nr
Match: TYK29861.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 23  TKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCIL 82
           T++   F+CREC GF H++AE PTFLK +KKS   TLS+++S + S+ EE   ALL C++
Sbjct: 126 TEVTVGFKCRECEGFRHYEAECPTFLKRKKKSLKNTLSNEKSSSDSDEEEKSRALLICVI 185

Query: 83  EE 85
           E+
Sbjct: 186 ED 187

[Close]

BLAST of PI0000530 vs. NCBI nr
Match: TYJ98064.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 3   SASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDD 62
           S  Y ++  ++ DKS      K DKS RC EC G+ HFQAE PT+LK +KKS N+TL D+
Sbjct: 206 SGGYDSQTNRDGDKS-----GKSDKSVRCHECEGYRHFQAEYPTYLKIKKKSVNITLLDE 265

Query: 63  ESDASSENEEDGCALLGCILE 84
           ++ + SE E+ G AL  C  E
Sbjct: 266 DTLSDSECEDYGRALNNCEAE 281

The following BLAST results are available for this feature:

BLAST of PI0000530 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG15	1.0e-12	47.73	MADS-box transcription factor PHERES 2-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3DD57	2.1e-10	54.05	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G...	[more]
A0A5D3C137	5.1e-09	47.37	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119...	[more]
A0A5D3E2N4	1.1e-08	50.00	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G...	[more]
A0A5D3BG63	2.0e-08	46.91	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of PI0000530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036579.1	2.1e-12	47.73	MADS-box transcription factor PHERES 2-like [Cucumis melo var. makuwa] >TYK22641...	[more]
KAA0051793.1	4.3e-10	54.05	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [...	[more]
KAA0047417.1	1.1e-08	47.37	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [...	[more]
TYK29861.1	2.4e-08	50.00	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ98064.1	4.0e-08	46.91	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0000530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000530.1	PI0000530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding