PI0000508 (gene) Melon (PI 482460) v1

Overview


Name	PI0000508
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RNA polymerase II C-terminal domain phosphatase-like 1
Location	chr04: 17650083 .. 17650370 (+)
RNA-Seq Expression	PI0000508
Synteny	PI0000508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCAGAGCAAGGTATCGATGAAACCCTAGAAGATCAAACACCTGTTGGAAACCCAACGAAGGACACAACTGTAATTAGTGTCGTCGTCGATGCTCGGATTGGATTTGCCATGGACGAATGGTTCCGCCGTTTTCAGACTACACCGACCTTCCAAAATCCGGTAGTTTTTCAGTCCAACGCACCTTCACGCGCCGCCGCTGGAGCAACACGCGCCTGCTTTTTCTGGTCAGAAGCCGTCGGTCGATCCTCCCCTGCCACCCTTATCTTTATCCGCAGCTGCTAG

mRNA sequence

ATGGTATCAGAGCAAGGTATCGATGAAACCCTAGAAGATCAAACACCTGTTGGAAACCCAACGAAGGACACAACTGTAATTAGTGTCGTCGTCGATGCTCGGATTGGATTTGCCATGGACGAATGGTTCCGCCGTTTTCAGACTACACCGACCTTCCAAAATCCGGTAGTTTTTCAGTCCAACGCACCTTCACGCGCCGCCGCTGGAGCAACACGCGCCTGCTTTTTCTGGTCAGAAGCCGTCGGTCGATCCTCCCCTGCCACCCTTATCTTTATCCGCAGCTGCTAG

Coding sequence (CDS)

ATGGTATCAGAGCAAGGTATCGATGAAACCCTAGAAGATCAAACACCTGTTGGAAACCCAACGAAGGACACAACTGTAATTAGTGTCGTCGTCGATGCTCGGATTGGATTTGCCATGGACGAATGGTTCCGCCGTTTTCAGACTACACCGACCTTCCAAAATCCGGTAGTTTTTCAGTCCAACGCACCTTCACGCGCCGCCGCTGGAGCAACACGCGCCTGCTTTTTCTGGTCAGAAGCCGTCGGTCGATCCTCCCCTGCCACCCTTATCTTTATCCGCAGCTGCTAG

Protein sequence

MVSEQGIDETLEDQTPVGNPTKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGATRACFFWSEAVGRSSPATLIFIRSC

Homology

[Close]

BLAST of PI0000508 vs. ExPASy TrEMBL
Match: A0A5A7VQC5 (tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G00790 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 40/77 (51.95%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 21  TKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGAT---RACFFW 80
           +K+TT IS  VDARIG  MDEWFR+ QTTPT  NP      A  RA  GA    R     
Sbjct: 335 SKETTTISAAVDARIGATMDEWFRQLQTTPTTLNPSFILPYASPRAGGGAVGDPRTYQSH 394

Query: 81  SEAVGRSSPATLIFIRS 95
           SEA  +  PATL FIR+
Sbjct: 395 SEAADQPIPATLAFIRN 411

[Close]

BLAST of PI0000508 vs. ExPASy TrEMBL
Match: A0A5D3C1P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold432G00040 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.1e-07
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 1  MVSEQGIDETLEDQTPVGNPTKD-----TTVISVVVDARIGFAMDEWFRRFQTTPTFQNP 60
          MVSE  ID+TLE+ T  GN T++     + V++  V+A+I  AM+EWF   QTTP     
Sbjct: 1  MVSEHDIDQTLENTTLDGNQTEEIAVRISIVVAAAVNAQISIAMNEWFCCLQTTPANMIL 60

Query: 61 VVFQSNAPSRAAAGATRACFFWSEAVGRSSPATL 90
            F S+AP RAA G  R     S   G+S   TL
Sbjct: 61 SPFPSSAPPRAAVGNLRTSLSSSNHAGQSFSTTL 94

[Close]

BLAST of PI0000508 vs. ExPASy TrEMBL
Match: A0A5D3BW68 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001890 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 1    MVSEQGIDETLEDQTPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTT------ 60
            MVSE+ I++TL + T  GN TK T     T+++  VDAR    M+EW      T      
Sbjct: 1596 MVSERDIEQTLSNTTSDGNQTKRTATSFSTIVAAAVDARFNVVMEEWLLHIDKTLGIIIL 1655

Query: 61   PTFQNPVVFQ-SNAPSRAAAGATRACFFWSEAVGRSSPATLIFIR 94
              F + V+ + S+ P     GATRA    S+A+GR + ATL+FIR
Sbjct: 1656 HNFLSSVLLETSHGPPH---GATRAGLSCSDAIGRPNCATLVFIR 1697

[Close]

BLAST of PI0000508 vs. ExPASy TrEMBL
Match: A0A5A7U5T5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001050 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTF 60
          MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP  
Sbjct: 1  MVSKRDIEHILEIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPEN 60

Query: 61 QNPVVFQSNAPSRA 67
            P   QS+AP ++
Sbjct: 61 SFPSNLQSSAPPKS 74

[Close]

BLAST of PI0000508 vs. ExPASy TrEMBL
Match: A0A5D3C8I9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00870 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTF 60
          MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP  
Sbjct: 1  MVSKRDIEHILEIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPEN 60

Query: 61 QNPVVFQSNAPSRA 67
            P   QS+AP ++
Sbjct: 61 SFPSNLQSSAPPKS 74

[Close]

BLAST of PI0000508 vs. NCBI nr
Match: KAA0067419.1 (tRNA modification GTPase MnmE [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 40/77 (51.95%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 21  TKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGAT---RACFFW 80
           +K+TT IS  VDARIG  MDEWFR+ QTTPT  NP      A  RA  GA    R     
Sbjct: 335 SKETTTISAAVDARIGATMDEWFRQLQTTPTTLNPSFILPYASPRAGGGAVGDPRTYQSH 394

Query: 81  SEAVGRSSPATLIFIRS 95
           SEA  +  PATL FIR+
Sbjct: 395 SEAADQPIPATLAFIRN 411

[Close]

BLAST of PI0000508 vs. NCBI nr
Match: TYK05873.1 (uncharacterized protein E5676_scaffold432G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 1  MVSEQGIDETLEDQTPVGNPTKD-----TTVISVVVDARIGFAMDEWFRRFQTTPTFQNP 60
          MVSE  ID+TLE+ T  GN T++     + V++  V+A+I  AM+EWF   QTTP     
Sbjct: 1  MVSEHDIDQTLENTTLDGNQTEEIAVRISIVVAAAVNAQISIAMNEWFCCLQTTPANMIL 60

Query: 61 VVFQSNAPSRAAAGATRACFFWSEAVGRSSPATL 90
            F S+AP RAA G  R     S   G+S   TL
Sbjct: 61 SPFPSSAPPRAAVGNLRTSLSSSNHAGQSFSTTL 94

[Close]

BLAST of PI0000508 vs. NCBI nr
Match: TYK03082.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 1    MVSEQGIDETLEDQTPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTT------ 60
            MVSE+ I++TL + T  GN TK T     T+++  VDAR    M+EW      T      
Sbjct: 1596 MVSERDIEQTLSNTTSDGNQTKRTATSFSTIVAAAVDARFNVVMEEWLLHIDKTLGIIIL 1655

Query: 61   PTFQNPVVFQ-SNAPSRAAAGATRACFFWSEAVGRSSPATLIFIR 94
              F + V+ + S+ P     GATRA    S+A+GR + ATL+FIR
Sbjct: 1656 HNFLSSVLLETSHGPPH---GATRAGLSCSDAIGRPNCATLVFIR 1697

[Close]

BLAST of PI0000508 vs. NCBI nr
Match: TYK07795.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTF 60
          MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP  
Sbjct: 1  MVSKRDIEHILEIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPEN 60

Query: 61 QNPVVFQSNAPSRA 67
            P   QS+AP ++
Sbjct: 61 SFPSNLQSSAPPKS 74

[Close]

BLAST of PI0000508 vs. NCBI nr
Match: KAA0050638.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTF 60
          MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP  
Sbjct: 1  MVSKRDIEHILEIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPEN 60

Query: 61 QNPVVFQSNAPSRA 67
            P   QS+AP ++
Sbjct: 61 SFPSNLQSSAPPKS 74

The following BLAST results are available for this feature:

BLAST of PI0000508 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQC5	1.7e-08	51.95	tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C1P7	9.1e-07	42.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BW68	1.0e-05	39.05	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00...	[more]
A0A5A7U5T5	2.5e-04	44.59	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G0...	[more]
A0A5D3C8I9	2.5e-04	44.59	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G...	[more]

BLAST of PI0000508 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067419.1	3.4e-08	51.95	tRNA modification GTPase MnmE [Cucumis melo var. makuwa]	[more]
TYK05873.1	1.9e-06	42.55	uncharacterized protein E5676_scaffold432G00040 [Cucumis melo var. makuwa]	[more]
TYK03082.1	2.1e-05	39.05	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK07795.1	5.1e-04	44.59	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0050638.1	5.1e-04	44.59	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of PI0000508 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000508.1	PI0000508.1	mRNA