PI0000491 (gene) Melon (PI 482460) v1

Overview
NamePI0000491
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr09: 13906776 .. 13906946 (+)
RNA-Seq ExpressionPI0000491
SyntenyPI0000491
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATGAATGGGGTCGTTGAAAACATAACAAATATCTATACTATGAAGCACCTGCAAAGGTATCAGACCCACAAGAGTACTAACAAGAACCAAAGAATCAAGAGGAGCCAGAGCAACATAGAGTTCAAAGTCGACGGCAACATCCAGCTGGAAATCGATGACGTCTGA

mRNA sequence

ATGGACATGAATGGGGTCGTTGAAAACATAACAAATATCTATACTATGAAGCACCTGCAAAGGTATCAGACCCACAAGAGTACTAACAAGAACCAAAGAATCAAGAGGAGCCAGAGCAACATAGAGTTCAAAGTCGACGGCAACATCCAGCTGGAAATCGATGACGTCTGA

Coding sequence (CDS)

ATGGACATGAATGGGGTCGTTGAAAACATAACAAATATCTATACTATGAAGCACCTGCAAAGGTATCAGACCCACAAGAGTACTAACAAGAACCAAAGAATCAAGAGGAGCCAGAGCAACATAGAGTTCAAAGTCGACGGCAACATCCAGCTGGAAATCGATGACGTCTGA

Protein sequence

MDMNGVVENITNIYTMKHLQRYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV
Homology
BLAST of PI0000491 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDMNGVVENITNIYTMKHLQRYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV 57
           MDM+  + NITNI  MKHLQ YQ  KSTNKNQR KR+++NIEF+VD + QLEIDDV
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0000491 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-08
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1   MDMNGVVENITNIYTMKHLQRYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV 57
           MD +  + NI NI  MKHLQ YQ  KSTNKNQR KR+++NIE +VD N QLEIDDV
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDV 213

BLAST of PI0000491 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 9   NITNIYTMKHLQRYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV 57
           NITNI  MKHLQ YQ  KSTNKNQR KR+++NIEF+V+ + QL+ID+V
Sbjct: 355 NITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEV 402

BLAST of PI0000491 vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-04
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 21 RYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV 57
          RYQ  KSTNKNQR KR+Q+NIEFKVD + QLEIDD+
Sbjct: 25 RYQIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDI 60

BLAST of PI0000491 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDMNGVVENITNIYTMKHLQRYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV 57
           MDM+  + NITNI  MKHLQ YQ  KSTNKNQR KR+++NIEF+VD + QLEIDDV
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0000491 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 7.6e-08
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1   MDMNGVVENITNIYTMKHLQRYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV 57
           MD +  + NI NI  MKHLQ YQ  KSTNKNQR KR+++NIE +VD N QLEIDDV
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDV 213

BLAST of PI0000491 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 9   NITNIYTMKHLQRYQTHKSTNKNQRIKRSQSNIEFKVDGNIQLEIDDV 57
           NITNI  MKHLQ YQ  KSTNKNQR KR+++NIEF+V+ + QL+ID+V
Sbjct: 355 NITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEV 402

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VF641.2e-0967.86Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3C2V93.7e-0864.29Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TDY51.2e-0666.67Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7TI035.5e-0475.00Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa... [more]
Match NameE-valueIdentityDescription
KAA0066693.12.4e-0967.86mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0040602.17.6e-0864.29mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0041168.12.5e-0666.67serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000491.1PI0000491.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance