PI0000265 (gene) Melon (PI 482460) v1

Overview
NamePI0000265
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Locationchr01: 13201316 .. 13202336 (-)
RNA-Seq ExpressionPI0000265
SyntenyPI0000265
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCAAACAACTGAATGAAAGATTGGAAAGTATTGAAAAGGAAGTTTTGGGCCTCAAGGAAATGATGCTGGATATGAAAAAGGCATTCGACCGAATGACCAAAGACATGAAAGAAAGTAGTTCCTACCGGAGAAGGGATGAATCAGGTACTTCCGACGGTTCAGTGATGAAACTGAAGGGAAAGATGAACGAATCGAAAGCCCAGGTGGAAGCTGTAGCAGGAACATTTGACAGAAGCAAGTATAAGAAGCTGGAGATGCCTCTGTTTATGGGAGAGAACCCGGAATCCTGGGTCTACCGTGCTGAACACTTTTTTTAGATTAATGATTTATCTGAGGCAGAGAAGGTCAAAGTAGTTGTGGTGAGTTTTGGCCAAGATGAGATTAACTAGTTTCGATGGAGTAACAATAGAAAGAAGATTGAGTCATGGGAAGATTTGAAGAAGAGAATGTTCGATCACTTTAGAGATCAAGGTCCTGGAAGTTGGGGCCAAGGTTGATCGCATAACACAAAATGGGTCATACAACGAGTACGTGAAAAAGTTCCTTGTGTTTCAGATGCAATAATAAGTATTCTCCGAGACACCGCTGTAAAGTTAACGAGAAAAGGGAACTTATGCTCTTTATAATGAATGAAAATGAGGGCGAATTGGAAGAAGGAATCGTCGTCGATGGAGAGGAAGAAATAGTGGAGTTGAAGAAATTAGAAGTTCCAATAGAAATAGAGATTGAACTGAGGACTTTGATGGGATTCTTAGCAAAAGGAACAATGAAGATTAGGGGTACGTAAAAGATCAAGAAGTGATTGTGTTAATCGATAGTGGCGCCACTCACAACTTCATTCATCAAAACCTTGTGGAAAAACTAGGTCTAACTATTGAGGCAGGCAACGATTTTGGAGTAATGATCGGAGATGGAACAGACAGGAGGGGAAAAGGGTTGTGCAGAAGGATAAAAATGAAGTTACCTGAGCTGACTCTCATTGCGGATTTATTGGCAGTAGAGTTGGAAAGGTAA

mRNA sequence

ATGGCAACCAAACAACTGAATGAAAGATTGGAAAGTATTGAAAAGGAAGTTTTGGGCCTCAAGGAAATGATGCTGGATATGAAAAAGGCATTCGACCGAATGACCAAAGACATGAAAGAAAGTAGTTCCTACCGGAGAAGGGATGAATCAGGTACTTCCGACGGTTCAGTGATGAAACTGAAGGGAAAGATGAACGAATCGAAAGCCCAGGTGGAAGCTGTAGCAGGAACATTTGACAGAAGCAAATGCAATAATAAGTATTCTCCGAGACACCGCTGTAAAGTTAACGAGAAAAGGGAACTTATGCTCTTTATAATGAATGAAAATGAGGGCGAATTGGAAGAAGGAATCGTCGTCGATGGAGAGGAAGAAATAGTGGAGTTGAAGAAATTAGAAGTTCCAATAGAAATAGAGATTGAACTGAGGACTTTGATGGGATTCTTAGCAAAAGGAACAATGAAGATTAGGGGTCTAACTATTGAGGCAGGCAACGATTTTGGAGTAATGATCGGAGATGGAACAGACAGGAGGGGAAAAGGGTTGTGCAGAAGGATAAAAATGAAGTTACCTGAGCTGACTCTCATTGCGGATTTATTGGCAGTAGAGTTGGAAAGGTAA

Coding sequence (CDS)

ATGGCAACCAAACAACTGAATGAAAGATTGGAAAGTATTGAAAAGGAAGTTTTGGGCCTCAAGGAAATGATGCTGGATATGAAAAAGGCATTCGACCGAATGACCAAAGACATGAAAGAAAGTAGTTCCTACCGGAGAAGGGATGAATCAGGTACTTCCGACGGTTCAGTGATGAAACTGAAGGGAAAGATGAACGAATCGAAAGCCCAGGTGGAAGCTGTAGCAGGAACATTTGACAGAAGCAAATGCAATAATAAGTATTCTCCGAGACACCGCTGTAAAGTTAACGAGAAAAGGGAACTTATGCTCTTTATAATGAATGAAAATGAGGGCGAATTGGAAGAAGGAATCGTCGTCGATGGAGAGGAAGAAATAGTGGAGTTGAAGAAATTAGAAGTTCCAATAGAAATAGAGATTGAACTGAGGACTTTGATGGGATTCTTAGCAAAAGGAACAATGAAGATTAGGGGTCTAACTATTGAGGCAGGCAACGATTTTGGAGTAATGATCGGAGATGGAACAGACAGGAGGGGAAAAGGGTTGTGCAGAAGGATAAAAATGAAGTTACCTGAGCTGACTCTCATTGCGGATTTATTGGCAGTAGAGTTGGAAAGGTAA

Protein sequence

MATKQLNERLESIEKEVLGLKEMMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKMNESKAQVEAVAGTFDRSKCNNKYSPRHRCKVNEKRELMLFIMNENEGELEEGIVVDGEEEIVELKKLEVPIEIEIELRTLMGFLAKGTMKIRGLTIEAGNDFGVMIGDGTDRRGKGLCRRIKMKLPELTLIADLLAVELER
Homology
BLAST of PI0000265 vs. ExPASy TrEMBL
Match: A0A5A7TZQ5 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001280 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 107/260 (41.15%), Postives = 142/260 (54.62%), Query Frame = 0

Query: 1   MATKQLNERLESIEKEVLGLKEMMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKL 60
           MA +Q+ ER+E +EKE+LGLKE ML++KK  DRM  +M+E++SY+RR+ES TS+ S MKL
Sbjct: 1   MAQRQMEERVEGMEKEILGLKETMLELKKTMDRMADEMRENTSYKRREESSTSNASAMKL 60

Query: 61  KGKMNESKA--------------QVEAV----------------------AGTFDRSK-- 120
           KGK  ES                QVE V                      A    R+K  
Sbjct: 61  KGKSEESDVETKMNTPAGLEPCLQVEVVSRRPQTLEACMKEAQLVTDQNLALKLARAKLG 120

Query: 121 ---------CNNKYSPRHRCKVNEKRELMLFIM--------NENEGELEEGIVVDGEEEI 180
                     N K S  +   V  K +  +  +         + EG  EE I+   EEEI
Sbjct: 121 IPEPKGGETSNIKASGGNEQGVQRKTKFQMKQITIPVKGNYQKEEGTEEEEIIEGMEEEI 180

Query: 181 VELKKLEVPIEIEIELRTLMGFLAKGTMKIRGLTIEAGNDFGVMIGDGTDRRGKGLCRRI 206
           VELK L+VP   EIEL+T+MGF  KGT+K++G+    G  FGV IGDGT   GK  C+R+
Sbjct: 181 VELKNLKVPEGTEIELKTIMGFATKGTVKLKGM----GTTFGVTIGDGTYYEGKRQCKRV 240

BLAST of PI0000265 vs. ExPASy TrEMBL
Match: A0A5D3DJ34 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00490 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.7e-29
Identity = 104/272 (38.24%), Postives = 136/272 (50.00%), Query Frame = 0

Query: 6   LNERLESIEKEVLGLKEMMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKMN 65
           + ER++  EKE++GLKEMML+MKKA +R+T +MKES SY++R+ESGTSDGS+MKLKGKM 
Sbjct: 1   MEERVDGTEKEIMGLKEMMLEMKKAVERLTDEMKESQSYKKREESGTSDGSMMKLKGKME 60

Query: 66  ESKAQVEAVAGTFDRSK------------------------------------------- 125
           E++   E    + D+SK                                           
Sbjct: 61  ETELITETNVTSVDKSKYKKLEMPITGRGGSSTGRKIVENERVVQRKTNFQMKQITIPIK 120

Query: 126 -----------------------------CNNKYSPRHRCKVNEKRELMLFIMNENEGEL 185
                                        CN KYSP H CK  EKRELM FI+NE E   
Sbjct: 121 GNYKRREPPIKRLSDAEFRARLDRGLCFRCNGKYSPGHHCKTKEKRELMFFILNEEEEAE 180

Query: 186 EEGIVVDGEEEIVELKKLEVPIEIEIELRTLMGFLAKGTMKIRGLTIEAGNDFGVM-IGD 204
           EE    + EE  VELK LE+    EIEL+T+ G  +K  +    +  EAG  +       
Sbjct: 181 EEHSKDEKEERTVELKNLEIIEGTEIELKTMTGLTSK--VLSGRIENEAGTRYSFWGYYW 240

BLAST of PI0000265 vs. ExPASy TrEMBL
Match: A0A5D3BLT6 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00860 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 93/250 (37.20%), Postives = 123/250 (49.20%), Query Frame = 0

Query: 23  MMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKM------------------ 82
           MML++KKA D M  DM+++SSYRRR+ SG S+G VMK KGK                   
Sbjct: 1   MMLELKKAVDHMPDDMRDNSSYRRRNGSGMSNGYVMKQKGKWLTQKLFWTTRQGLWIELA 60

Query: 83  --------------------------NESKAQVE------AVAGTFDRS----------- 142
                                     N S+A  +       + G + +            
Sbjct: 61  TAELSNQGFSGAVNQVFKKTGGGEKGNSSRADFQMKQITIPIKGNYSKGEPPMKRLDKGL 120

Query: 143 --KCNNKYSPRHRCKVNEKRELMLFIMNENEGELEEGIVVDGEEEIVELKKLEVPIEIEI 181
             +CN KYS  H CK+ EKRELMLFIMNE EGE E  ++++GE+E++ELK LEVP E EI
Sbjct: 121 CFRCNEKYSHGHSCKIKEKRELMLFIMNEEEGEGEGNVLIEGEKEVMELKNLEVPPETEI 180

BLAST of PI0000265 vs. ExPASy TrEMBL
Match: A0A5A7UG23 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00300 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 96/293 (32.76%), Postives = 125/293 (42.66%), Query Frame = 0

Query: 23  MMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKM------------------ 82
           MML++KKA D M  DM+++SSYRRR+ SGTSDG VMK KGK                   
Sbjct: 1   MMLELKKAVDHMPDDMRDNSSYRRRNGSGTSDGYVMKQKGKWPTQKLFWTTRQGLWIEVS 60

Query: 83  ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  IKSWKCPCSLERTQNQGFTVQNIFSRLMNDLLKAEKVKVAVLATAELSNQGFSGAVNQVF 120

Query: 143 ---------NESKAQVE------AVAGTFDRS-------------KCNNKYSPRHRCKVN 181
                    N S+A  +       + G + +              +CN KYS  HRCK+ 
Sbjct: 121 KKTGGGEKGNSSRADFQMKQITIPIKGNYSKGEPPMKRLDKGLCFRCNEKYSHGHRCKIK 180

BLAST of PI0000265 vs. ExPASy TrEMBL
Match: A0A5D3BB24 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001070 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-24
Identity = 77/176 (43.75%), Postives = 100/176 (56.82%), Query Frame = 0

Query: 23  MMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKMNESKAQVEA--------- 82
           MMLD+KK  DRM +DM+E+++Y+R++ESGTSDGSVMKLK KM + +   +A         
Sbjct: 64  MMLDLKKVIDRMAEDMRENTNYKRKEESGTSDGSVMKLKEKMEDLEIGGDASSTKIVGGN 123

Query: 83  ------------------VAGTFDRSK----------------------CNNKYSPRHRC 142
                             + G + + +                      CN  YS  HRC
Sbjct: 124 EKGNPRKTEFQMKQITIPIKGNYPKGEPPVKRLLDTKFRARLDKGLCFICNEIYSHGHRC 183

Query: 143 KVNEKRELMLFIMNENEGELEEGIVVDGEEEIVELKKLEVPIEIEIELRTLMGFLA 150
           KV EKRELMLFI NE EG   EG++V+ EE+IVELK LEVP+E EIEL+T+MGF A
Sbjct: 184 KVKEKRELMLFIFNEEEG--AEGVIVEIEEDIVELKNLEVPVETEIELKTIMGFAA 237

BLAST of PI0000265 vs. NCBI nr
Match: KAA0048514.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK28305.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 5.6e-32
Identity = 107/260 (41.15%), Postives = 142/260 (54.62%), Query Frame = 0

Query: 1   MATKQLNERLESIEKEVLGLKEMMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKL 60
           MA +Q+ ER+E +EKE+LGLKE ML++KK  DRM  +M+E++SY+RR+ES TS+ S MKL
Sbjct: 1   MAQRQMEERVEGMEKEILGLKETMLELKKTMDRMADEMRENTSYKRREESSTSNASAMKL 60

Query: 61  KGKMNESKA--------------QVEAV----------------------AGTFDRSK-- 120
           KGK  ES                QVE V                      A    R+K  
Sbjct: 61  KGKSEESDVETKMNTPAGLEPCLQVEVVSRRPQTLEACMKEAQLVTDQNLALKLARAKLG 120

Query: 121 ---------CNNKYSPRHRCKVNEKRELMLFIM--------NENEGELEEGIVVDGEEEI 180
                     N K S  +   V  K +  +  +         + EG  EE I+   EEEI
Sbjct: 121 IPEPKGGETSNIKASGGNEQGVQRKTKFQMKQITIPVKGNYQKEEGTEEEEIIEGMEEEI 180

Query: 181 VELKKLEVPIEIEIELRTLMGFLAKGTMKIRGLTIEAGNDFGVMIGDGTDRRGKGLCRRI 206
           VELK L+VP   EIEL+T+MGF  KGT+K++G+    G  FGV IGDGT   GK  C+R+
Sbjct: 181 VELKNLKVPEGTEIELKTIMGFATKGTVKLKGM----GTTFGVTIGDGTYYEGKRQCKRV 240

BLAST of PI0000265 vs. NCBI nr
Match: TYK23478.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-29
Identity = 104/272 (38.24%), Postives = 136/272 (50.00%), Query Frame = 0

Query: 6   LNERLESIEKEVLGLKEMMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKMN 65
           + ER++  EKE++GLKEMML+MKKA +R+T +MKES SY++R+ESGTSDGS+MKLKGKM 
Sbjct: 1   MEERVDGTEKEIMGLKEMMLEMKKAVERLTDEMKESQSYKKREESGTSDGSMMKLKGKME 60

Query: 66  ESKAQVEAVAGTFDRSK------------------------------------------- 125
           E++   E    + D+SK                                           
Sbjct: 61  ETELITETNVTSVDKSKYKKLEMPITGRGGSSTGRKIVENERVVQRKTNFQMKQITIPIK 120

Query: 126 -----------------------------CNNKYSPRHRCKVNEKRELMLFIMNENEGEL 185
                                        CN KYSP H CK  EKRELM FI+NE E   
Sbjct: 121 GNYKRREPPIKRLSDAEFRARLDRGLCFRCNGKYSPGHHCKTKEKRELMFFILNEEEEAE 180

Query: 186 EEGIVVDGEEEIVELKKLEVPIEIEIELRTLMGFLAKGTMKIRGLTIEAGNDFGVM-IGD 204
           EE    + EE  VELK LE+    EIEL+T+ G  +K  +    +  EAG  +       
Sbjct: 181 EEHSKDEKEERTVELKNLEIIEGTEIELKTMTGLTSK--VLSGRIENEAGTRYSFWGYYW 240

BLAST of PI0000265 vs. NCBI nr
Match: TYJ99691.1 (hypothetical protein E5676_scaffold562G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-28
Identity = 93/250 (37.20%), Postives = 123/250 (49.20%), Query Frame = 0

Query: 23  MMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKM------------------ 82
           MML++KKA D M  DM+++SSYRRR+ SG S+G VMK KGK                   
Sbjct: 1   MMLELKKAVDHMPDDMRDNSSYRRRNGSGMSNGYVMKQKGKWLTQKLFWTTRQGLWIELA 60

Query: 83  --------------------------NESKAQVE------AVAGTFDRS----------- 142
                                     N S+A  +       + G + +            
Sbjct: 61  TAELSNQGFSGAVNQVFKKTGGGEKGNSSRADFQMKQITIPIKGNYSKGEPPMKRLDKGL 120

Query: 143 --KCNNKYSPRHRCKVNEKRELMLFIMNENEGELEEGIVVDGEEEIVELKKLEVPIEIEI 181
             +CN KYS  H CK+ EKRELMLFIMNE EGE E  ++++GE+E++ELK LEVP E EI
Sbjct: 121 CFRCNEKYSHGHSCKIKEKRELMLFIMNEEEGEGEGNVLIEGEKEVMELKNLEVPPETEI 180

BLAST of PI0000265 vs. NCBI nr
Match: KAA0054752.1 (hypothetical protein E6C27_scaffold437G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-25
Identity = 96/293 (32.76%), Postives = 125/293 (42.66%), Query Frame = 0

Query: 23  MMLDMKKAFDRMTKDMKESSSYRRRDESGTSDGSVMKLKGKM------------------ 82
           MML++KKA D M  DM+++SSYRRR+ SGTSDG VMK KGK                   
Sbjct: 1   MMLELKKAVDHMPDDMRDNSSYRRRNGSGTSDGYVMKQKGKWPTQKLFWTTRQGLWIEVS 60

Query: 83  ------------------------------------------------------------ 142
                                                                       
Sbjct: 61  IKSWKCPCSLERTQNQGFTVQNIFSRLMNDLLKAEKVKVAVLATAELSNQGFSGAVNQVF 120

Query: 143 ---------NESKAQVE------AVAGTFDRS-------------KCNNKYSPRHRCKVN 181
                    N S+A  +       + G + +              +CN KYS  HRCK+ 
Sbjct: 121 KKTGGGEKGNSSRADFQMKQITIPIKGNYSKGEPPMKRLDKGLCFRCNEKYSHGHRCKIK 180

BLAST of PI0000265 vs. NCBI nr
Match: XP_031745419.1 (uncharacterized protein LOC116405630 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-24
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 0

Query: 82  KCNNKYSPRHRCKVNEKRELMLFIMNENEGELEEGIVVDGEEEIVELKKLEVPIEIEIEL 141
           +CN KY+P HRCK  EKRELML I+NE E    E    D   E++EL  LE+ ++  IEL
Sbjct: 273 RCNEKYAPGHRCKGREKRELMLLILNEEEDHKREEDTEDEASEVIELNHLELNMDNPIEL 332

Query: 142 RTLMGFLAKGTMKIRG-LTIEAGNDFGVMIGDGTDRRGKGLCRRIKMKLPELTLIADLLA 201
           R + G  +KGTMK++G L+I+ G  FGV IG+     G G+C+R+K+KL ELT++AD LA
Sbjct: 333 RLITGVTSKGTMKLKGHLSIDPGTRFGVTIGNDNQCEGSGICKRVKVKLKELTIVADFLA 392

Query: 202 VEL 204
           VEL
Sbjct: 393 VEL 395

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TZQ52.7e-3241.15Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001280... [more]
A0A5D3DJ343.7e-2938.24Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3BLT61.8e-2837.20Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7UG231.9e-2532.76Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3BB246.1e-2443.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0048514.15.6e-3241.15peroxidase 64 [Cucumis melo var. makuwa] >TYK28305.1 peroxidase 64 [Cucumis melo... [more]
TYK23478.17.6e-2938.24Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
TYJ99691.13.8e-2837.20hypothetical protein E5676_scaffold562G00860 [Cucumis melo var. makuwa][more]
KAA0054752.13.9e-2532.76hypothetical protein E6C27_scaffold437G00300 [Cucumis melo var. makuwa][more]
XP_031745419.15.6e-2451.22uncharacterized protein LOC116405630 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000265.1PI0000265.1mRNA