PI0000201 (gene) Melon (PI 482460) v1

Overview


Name	PI0000201
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Location	chr04: 17892665 .. 17893418 (-)
RNA-Seq Expression	PI0000201
Synteny	PI0000201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTTGTACTCGAAGTGGTAGTGGACCAGGATGTAGTAGTACTACTAGTACACAAACTGTCTCATCAGGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGTGATGCGATTACTACACCTTTCAAACAGGGGTTATTAGAGATTGATATATATTTGTTGGAAGCCAATGTTAGGAACGAAGGTGATTTTGACATACTACAGTCGTGGAAGATGAACAGTGATCGATTTGAGGTTCTTAGTCATATGGCTAGAGATATTTTGGCTATTCCAGTTTTTACTGTAGCGTCTGAGTCGACTTTTAGTACCGGAGGACGTGTAGTTGATTCATCACATTGCTCATTGGCTCTTAAAACAGTGAAGGCTCTCATATGTACTCAAAATTGGCTAAATTCTGATGCAATAGATCTTGAAGTTCAACGTGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGTATTATTCAATTTTTTTAACGATGTGTCTTTTGTAATTTTAGTGAAATCTTAAATTATTTAATATTCATGATGTTGTCTTTCTCTTCTTACTCTTGATTTTGATTATATAGGATTCCAGGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTACACATTTAGATAACTTGTCAATTACCAACTACGCGACTACTGACTAA

mRNA sequence

ATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTTGTACTCGAAGTGGTAGTGGACCAGGATGTAGTAGTACTACTAGTACACAAACTGTCTCATCAGGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGATTCCAGGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTACACATTTAGATAACTTGTCAATTACCAACTACGCGACTACTGACTAA

Coding sequence (CDS)

ATGGGAAATGTAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTTGTACTCGAAGTGGTAGTGGACCAGGATGTAGTAGTACTACTAGTACACAAACTGTCTCATCAGGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGATTCCAGGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTACACATTTAGATAACTTGTCAATTACCAACTACGCGACTACTGACTAA

Protein sequence

MGNVVEQCCRRLFHEYSCTRSGSGPGCSSTTSTQTVSSGLDANIDFDPNEKVGEDFVYDTIVEEFEGFQVVMDNEKELEDLTHLDNLSITNYATTD

Homology

[Close]

BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5A7URG0 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00400 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCSST--TSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCSST  TSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 526 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSITSTQTV-SGLDANIDFDSNENVGEDFVY 585

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 586 DTIVEEFE 592

[Close]

BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5D3CXI1 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004160 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 410 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 469

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 470 DTIVEEFE 476

[Close]

BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5D3CR68 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G001050 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 526 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 585

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 586 DTIVEEFE 592

[Close]

BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5A7SX87 (Thiamine biosynthetic bifunctional enzyme TH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001560 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 475 MGNVVEQCCRRLFHEYSTTRSGSRQGCSNTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 534

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 535 DTIVEEFE 541

[Close]

BLAST of PI0000201 vs. ExPASy TrEMBL
Match: A0A5D3DAN8 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001750 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 461 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 520

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 521 DTIVEEFE 527

[Close]

BLAST of PI0000201 vs. NCBI nr
Match: KAA0035954.1 (thiamine biosynthetic bifunctional enzyme TH1 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 475 MGNVVEQCCRRLFHEYSTTRSGSRQGCSNTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 534

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 535 DTIVEEFE 541

[Close]

BLAST of PI0000201 vs. NCBI nr
Match: KAA0057608.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
          MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 1  MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 60

Query: 61 DTIVEEFE 67
          DTIVEEFE
Sbjct: 61 DTIVEEFE 67

[Close]

BLAST of PI0000201 vs. NCBI nr
Match: KAA0038019.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 512 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 571

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 572 DTIVEEFE 578

[Close]

BLAST of PI0000201 vs. NCBI nr
Match: KAA0057700.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa] >TYK27486.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCSST--TSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCSST  TSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 526 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSITSTQTV-SGLDANIDFDSNENVGEDFVY 585

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 586 DTIVEEFE 592

[Close]

BLAST of PI0000201 vs. NCBI nr
Match: TYK28895.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MGNVVEQCCRRLFHEYSCTRSGSGPGCS--STTSTQTVSSGLDANIDFDPNEKVGEDFVY 60
           MGNVVEQCCRRLFHEYS TRSGS  GCS  STTSTQTV SGLDANIDFD NE VGEDFVY
Sbjct: 319 MGNVVEQCCRRLFHEYSTTRSGSRQGCSSTSTTSTQTV-SGLDANIDFDSNENVGEDFVY 378

Query: 61  DTIVEEFE 67
           DTIVEEFE
Sbjct: 379 DTIVEEFE 385

The following BLAST results are available for this feature:

BLAST of PI0000201 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URG0	1.0e-21	88.24	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3CXI1	1.0e-21	88.24	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5D3CR68	1.0e-21	88.24	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5A7SX87	1.0e-21	88.24	Thiamine biosynthetic bifunctional enzyme TH1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DAN8	1.0e-21	88.24	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]

BLAST of PI0000201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035954.1	2.1e-21	88.24	thiamine biosynthetic bifunctional enzyme TH1 [Cucumis melo var. makuwa]	[more]
KAA0057608.1	2.1e-21	88.24	transposase [Cucumis melo var. makuwa]	[more]
KAA0038019.1	2.1e-21	88.24	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
KAA0057700.1	2.1e-21	88.24	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
TYK28895.1	2.1e-21	88.24	putative transposase [Cucumis melo var. makuwa]	[more]

BLAST of PI0000201 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0000201.1	PI0000201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0009228	thiamine biosynthetic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008972	phosphomethylpyrimidine kinase activity
molecular_function	GO:0046983	protein dimerization activity