PI0000111 (gene) Melon (PI 482460) v1

Overview
NamePI0000111
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtein TIC 20
Locationchr06: 27129661 .. 27130908 (-)
RNA-Seq ExpressionPI0000111
SyntenyPI0000111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATTGTAAGCTATTAAAAGGATGATTTAACCAAAATAAGAATAGTTCAATAGATATTTTCATAGAGGGTTGAAATTAGAGATATTTATTTGTGTTTTTAAAGGAAAAAAAGAAAAGAAAAGGAAATGGTATAAAAACGAAGAGAGGCTCCAAAATCAACACGATCGGATTTCAAAATCCATTTCTTCACAACTTCAATGGCGATTCTTATCTTAAATCTCTCTCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCCCCATTTCCCTCTCCCTCAAACCCTAAAACAACCACCCTCAATTTCACCACCACTCTGCGACGGCGAGGGCGAGGGAGACGACGCATCCTCACCGTCCGATCCACCGGCGACAACAATAACTCTGCCGATGCCCCCGACCGTCTCATCTCCGCCATCTGCTACTTCTACCCCTTCTTCGACGGCGTCCAGTATGGCAAGTACGTTATCACTCAGTACACTCCATTTCAGGTTCTGATTCAACCTTTAGTTCCGGCGATTCGTGTTTTCAAGAGCTTTCCATTGAATAGTTTTTTGGTGTTTTTAACTCTTTACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGGTATGTTAGATTCAATATTATGCAAGCCATTGTTCTCGATGTACTTCTGATTTTCCCTGATCTTTTGGAGAGGAGCTTTAATCCTAGAGGGGGATTAGGGTTGGATTTAGTGATGAGTTTGGATAGTACTGTGTTCTTGTTTCTTTTGATTTGTTTGATTTATGGGTCTTCTTCTTGCTTGTTGGGTCAGATCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGACAAGTTATGTGAATTTTGTTTCTTCACTTCTTTGAAAATGGATCAGTTTAATTACTGTTCTTGCTGATTTTGTTTGTTGGGGGAAATTTGGATGGAATTCTCAAATTCTTCATTTGGGGGAAACCTAGTTGTAGATTAATAATCTGTTCCCAAATTTCTACACACCTATGAGGATGAAATAATTAAAGAAAATCGAAGTTAGAAATGATCTTCAATGTTCATTGTCCATTTTTCCATGTTTATTGAGCGAATTTCCAAAATTAATAAATAATAATAATAATAAAAAAGAGAGAGTGTCAGAAAATTAAGTATCTGAATGTTTCTCGTAATATAATAGGGCAATTATCAATTTATTATTATTTTTAACTTTTTTATGTTTGAGTTCGTTGAGCTTATACACAAATCAACTACTCTTG

mRNA sequence

CAAAATTGTAAGCTATTAAAAGGATGATTTAACCAAAATAAGAATAGTTCAATAGATATTTTCATAGAGGGTTGAAATTAGAGATATTTATTTGTGTTTTTAAAGGAAAAAAAGAAAAGAAAAGGAAATGGTATAAAAACGAAGAGAGGCTCCAAAATCAACACGATCGGATTTCAAAATCCATTTCTTCACAACTTCAATGGCGATTCTTATCTTAAATCTCTCTCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCCCCATTTCCCTCTCCCTCAAACCCTAAAACAACCACCCTCAATTTCACCACCACTCTGCGACGGCGAGGGCGAGGGAGACGACGCATCCTCACCGTCCGATCCACCGGCGACAACAATAACTCTGCCGATGCCCCCGACCGTCTCATCTCCGCCATCTGCTACTTCTACCCCTTCTTCGACGGCGTCCAGTATGGCAAGTACGTTATCACTCAGTACACTCCATTTCAGGTTCTGATTCAACCTTTAGTTCCGGCGATTCGTGTTTTCAAGAGCTTTCCATTGAATAGTTTTTTGGTGTTTTTAACTCTTTACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGGTATGTTAGATTCAATATTATGCAAGCCATTGTTCTCGATGTACTTCTGATTTTCCCTGATCTTTTGGAGAGGAGCTTTAATCCTAGAGGGGGATTAGGGTTGGATTTAGTGATGAGTTTGGATAGTACTGTGTTCTTGTTTCTTTTGATTTGTTTGATTTATGGGTCTTCTTCTTGCTTGTTGGGTCAGATCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGACAAGTTATGTGAATTTTGTTTCTTCACTTCTTTGAAAATGGATCAGTTTAATTACTGTTCTTGCTGATTTTGTTTGTTGGGGGAAATTTGGATGGAATTCTCAAATTCTTCATTTGGGGGAAACCTAGTTGTAGATTAATAATCTGTTCCCAAATTTCTACACACCTATGAGGATGAAATAATTAAAGAAAATCGAAGTTAGAAATGATCTTCAATGTTCATTGTCCATTTTTCCATGTTTATTGAGCGAATTTCCAAAATTAATAAATAATAATAATAATAAAAAAGAGAGAGTGTCAGAAAATTAAGTATCTGAATGTTTCTCGTAATATAATAGGGCAATTATCAATTTATTATTATTTTTAACTTTTTTATGTTTGAGTTCGTTGAGCTTATACACAAATCAACTACTCTTG

Coding sequence (CDS)

ATGGCGATTCTTATCTTAAATCTCTCTCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCCCCATTTCCCTCTCCCTCAAACCCTAAAACAACCACCCTCAATTTCACCACCACTCTGCGACGGCGAGGGCGAGGGAGACGACGCATCCTCACCGTCCGATCCACCGGCGACAACAATAACTCTGCCGATGCCCCCGACCGTCTCATCTCCGCCATCTGCTACTTCTACCCCTTCTTCGACGGCGTCCAGTATGGCAAGTACGTTATCACTCAGTACACTCCATTTCAGGTTCTGATTCAACCTTTAGTTCCGGCGATTCGTGTTTTCAAGAGCTTTCCATTGAATAGTTTTTTGGTGTTTTTAACTCTTTACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGGTATGTTAGATTCAATATTATGCAAGCCATTGTTCTCGATGTACTTCTGATTTTCCCTGATCTTTTGGAGAGGAGCTTTAATCCTAGAGGGGGATTAGGGTTGGATTTAGTGATGAGTTTGGATAGTACTGTGTTCTTGTTTCTTTTGATTTGTTTGATTTATGGGTCTTCTTCTTGCTTGTTGGGTCAGATCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGACAAGTTATGTGA

Protein sequence

MAILILNLSPKTLHSSFFPSPFPSPSNPKTTTLNFTTTLRRRGRGRRRILTVRSTGDNNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Homology
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BLAST of PI0000111 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-69
Identity = 143/208 (68.75%), Postives = 162/208 (77.88%), Query Frame = 0 

Query: 15  SSFFPSPFPSPSNPKTTT------LNFTTTL--RRRGRGRRRILTVRSTGDNNNSADAPD 74
           S FF +P PS +   T T      LN  T     R  R R   L ++S GD  +S DA D
Sbjct: 5   SQFF-APLPSLTGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD--DSVDASD 64

Query: 75  RLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYFV 134
           R+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFP N FL+F+TLYFV
Sbjct: 65  RIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITLYFV 124

Query: 135 VVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLIC 194
           VVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+ 
Sbjct: 125 VVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFLLVS 184

Query: 195 LIYGSSSCLLGQIPRLPIVADAADRQVM 215
           LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 LIYGFSACLFGLTPRLPLVAEAADRQVL 209

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BLAST of PI0000111 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-29
Identity = 82/205 (40.00%), Postives = 119/205 (58.05%), Query Frame = 0 

Query: 12  TLHSSFFPSPFPSP-SNPKTTTLNFTTTLRRRGRGRRRILTVRSTGDNNNSADAPDRLIS 71
           +LH +   +P  +P   P + +   ++T   R   RR   T  +T  +     A +R+IS
Sbjct: 7   SLHQT-LTNPLSAPRCRPLSLSFPGSSTFSIRPSSRR--ATALTTRASYTPTPATERVIS 66

Query: 72  AICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYFVVVRN 131
              Y  PFF+ +QYG+++  QY    +L +P+ P + +++S P  SF+ F  LY  VVRN
Sbjct: 67  IASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRN 126

Query: 132 PNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLI 191
            +FSRYVRFN MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +
Sbjct: 127 TSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFV 186

Query: 192 YGSSSCLLGQIPRLPIVADAADRQV 214
           YG  S LLG+ P +P VADAA RQ+
Sbjct: 187 YGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of PI0000111 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-21
Identity = 55/157 (35.03%), Postives = 92/157 (58.60%), Query Frame = 0 

Query: 58  NNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSF 117
           +N++AD  DR  SA+ Y  P  D   +G +++ Q+   Q++  P++P ++ +  FP  SF
Sbjct: 3   SNSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASF 62

Query: 118 LVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLL-IFPDLLERSFNPRGGLGLDLVMSLD 177
           ++F+ L+  VVRN N S ++RFN MQAI++ +LL +F  ++     P  G GL +  +L 
Sbjct: 63  IIFIVLFMAVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGL-VTETLY 122

Query: 178 STVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV 214
           +  FL  L C  +G    +LG+   +P ++DAA  QV
Sbjct: 123 NFAFLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

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BLAST of PI0000111 vs. ExPASy TrEMBL
Match: A0A5D3CPD4 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00160 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.2e-108
Identity = 208/215 (96.74%), Postives = 210/215 (97.67%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTTLNFTTTLRRRGRGRRRILTVRSTGD-NN 60
           MA LILNLSPKTLHSSFFPSPFP+ SNPKTTTLNFTTTLRRRGRGRRRI TVRSTGD NN
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60

Query: 61  NSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120
           NSAD PDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV
Sbjct: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120

Query: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTV 180
           FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDSTV
Sbjct: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180

Query: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]
BLAST of PI0000111 vs. ExPASy TrEMBL
Match: A0A1S3BM16 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103491027 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.2e-108
Identity = 208/215 (96.74%), Postives = 210/215 (97.67%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTTLNFTTTLRRRGRGRRRILTVRSTGD-NN 60
           MA LILNLSPKTLHSSFFPSPFP+ SNPKTTTLNFTTTLRRRGRGRRRI TVRSTGD NN
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60

Query: 61  NSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120
           NSAD PDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV
Sbjct: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120

Query: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTV 180
           FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDSTV
Sbjct: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180

Query: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]
BLAST of PI0000111 vs. ExPASy TrEMBL
Match: A0A0A0L632 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_3G047830 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.7e-99
Identity = 201/216 (93.06%), Postives = 201/216 (93.06%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTTLNFTTTLRRRGRGRRRILTVRSTGD--N 60
           MA LILNLSPKT HS F    FPS SNPKTTTLNFTTTL RR   R RILTVRSTGD  N
Sbjct: 1   MAFLILNLSPKTPHSPF----FPSLSNPKTTTLNFTTTLPRRWLARPRILTVRSTGDDNN 60

Query: 61  NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
           NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL
Sbjct: 61  NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180
           VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST
Sbjct: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180

Query: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

[Close]
BLAST of PI0000111 vs. ExPASy TrEMBL
Match: A0A6J1EW92 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111438760 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 196/223 (87.89%), Postives = 202/223 (90.58%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTT--------LNFTTTLRRRGRGRRRILTV 60
           MA LILNLSPKTLHSSFFPSPFPS SNP+TT         +NFTT  RRR   RRRILTV
Sbjct: 23  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 82

Query: 61  RSTGD-NNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120
           RS+GD +NN+AD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 83  RSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 142

Query: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL
Sbjct: 143 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 202

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 203 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 242

[Close]
BLAST of PI0000111 vs. ExPASy TrEMBL
Match: A0A6J1HN42 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111465112 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96
Identity = 195/222 (87.84%), Postives = 201/222 (90.54%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTT-------LNFTTTLRRRGRGRRRILTVR 60
           MA LILNLSPKTL SSFFPSPFPS SNP+TT        +NFTT  RRR   RRRILTVR
Sbjct: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRR---RRRILTVR 60

Query: 61  STGD-NNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSF 120
           S+GD +NN+AD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKSF
Sbjct: 61  SSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSF 120

Query: 121 PLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 180
           P N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV
Sbjct: 121 PFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 180

Query: 181 MSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           MSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 MSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 219

[Close]
BLAST of PI0000111 vs. NCBI nr
Match: XP_008449034.1 (PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo] >KAA0065731.1 protein TIC 20-v [Cucumis melo var. makuwa] >TYK13757.1 protein TIC 20-v [Cucumis melo var. makuwa])

HSP 1 Score: 399.4 bits (1025), Expect = 1.9e-107
Identity = 208/215 (96.74%), Postives = 210/215 (97.67%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTTLNFTTTLRRRGRGRRRILTVRSTGD-NN 60
           MA LILNLSPKTLHSSFFPSPFP+ SNPKTTTLNFTTTLRRRGRGRRRI TVRSTGD NN
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60

Query: 61  NSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120
           NSAD PDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV
Sbjct: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120

Query: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTV 180
           FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDSTV
Sbjct: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180

Query: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]
BLAST of PI0000111 vs. NCBI nr
Match: XP_004148263.1 (protein TIC 20-v, chloroplastic [Cucumis sativus])

HSP 1 Score: 371.3 bits (952), Expect = 5.5e-99
Identity = 201/216 (93.06%), Postives = 201/216 (93.06%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTTLNFTTTLRRRGRGRRRILTVRSTGD--N 60
           MA LILNLSPKT HS F    FPS SNPKTTTLNFTTTL RR   R RILTVRSTGD  N
Sbjct: 1   MAFLILNLSPKTPHSPF----FPSLSNPKTTTLNFTTTLPRRWLARPRILTVRSTGDDNN 60

Query: 61  NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
           NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL
Sbjct: 61  NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180
           VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST
Sbjct: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180

Query: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

[Close]
BLAST of PI0000111 vs. NCBI nr
Match: XP_038905184.1 (protein TIC 20-v, chloroplastic [Benincasa hispida])

HSP 1 Score: 370.5 bits (950), Expect = 9.5e-99
Identity = 200/216 (92.59%), Postives = 203/216 (93.98%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTTLNFTTTLRRRGRGRRRILTVRSTGDNN- 60
           MA+LILNLSPKTL+SSFFPSPFPS SNP  T +NFT TL RR   RRRILTVRSTGDNN 
Sbjct: 1   MAMLILNLSPKTLYSSFFPSPFPSLSNP--TQINFTATLPRR---RRRILTVRSTGDNNN 60

Query: 61  -NSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
            NSAD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKSFPLNSFL
Sbjct: 61  SNSADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPLNSFL 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180
           VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST
Sbjct: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180

Query: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 211

[Close]
BLAST of PI0000111 vs. NCBI nr
Match: XP_023553383.1 (protein TIC 20-v, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.5 bits (937), Expect = 3.0e-97
Identity = 196/222 (88.29%), Postives = 202/222 (90.99%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTT-------LNFTTTLRRRGRGRRRILTVR 60
           MA LILNLSPKTLHSSFFPSPFPS SNP+TT        +NFTT  RRR   RRRILTVR
Sbjct: 22  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRR---RRRILTVR 81

Query: 61  STGD-NNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSF 120
           S+GD +NN+AD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKSF
Sbjct: 82  SSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSF 141

Query: 121 PLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 180
           P N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV
Sbjct: 142 PFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 201

Query: 181 MSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           MSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 202 MSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 240

[Close]
BLAST of PI0000111 vs. NCBI nr
Match: XP_022932396.1 (protein TIC 20-v, chloroplastic [Cucurbita moschata])

HSP 1 Score: 365.2 bits (936), Expect = 4.0e-97
Identity = 196/223 (87.89%), Postives = 202/223 (90.58%), Query Frame = 0 

Query: 1   MAILILNLSPKTLHSSFFPSPFPSPSNPKTTT--------LNFTTTLRRRGRGRRRILTV 60
           MA LILNLSPKTLHSSFFPSPFPS SNP+TT         +NFTT  RRR   RRRILTV
Sbjct: 23  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 82

Query: 61  RSTGD-NNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120
           RS+GD +NN+AD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 83  RSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 142

Query: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL
Sbjct: 143 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 202

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 203 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 242

[Close]
BLAST of PI0000111 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-70
Identity = 143/208 (68.75%), Postives = 162/208 (77.88%), Query Frame = 0 

Query: 15  SSFFPSPFPSPSNPKTTT------LNFTTTL--RRRGRGRRRILTVRSTGDNNNSADAPD 74
           S FF +P PS +   T T      LN  T     R  R R   L ++S GD  +S DA D
Sbjct: 5   SQFF-APLPSLTGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD--DSVDASD 64

Query: 75  RLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYFV 134
           R+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFP N FL+F+TLYFV
Sbjct: 65  RIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITLYFV 124

Query: 135 VVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLIC 194
           VVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+ 
Sbjct: 125 VVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFLLVS 184

Query: 195 LIYGSSSCLLGQIPRLPIVADAADRQVM 215
           LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 LIYGFSACLFGLTPRLPLVAEAADRQVL 209

[Close]
BLAST of PI0000111 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 131.3 bits (329), Expect = 9.0e-31
Identity = 82/205 (40.00%), Postives = 119/205 (58.05%), Query Frame = 0 

Query: 12  TLHSSFFPSPFPSP-SNPKTTTLNFTTTLRRRGRGRRRILTVRSTGDNNNSADAPDRLIS 71
           +LH +   +P  +P   P + +   ++T   R   RR   T  +T  +     A +R+IS
Sbjct: 7   SLHQT-LTNPLSAPRCRPLSLSFPGSSTFSIRPSSRR--ATALTTRASYTPTPATERVIS 66

Query: 72  AICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYFVVVRN 131
              Y  PFF+ +QYG+++  QY    +L +P+ P + +++S P  SF+ F  LY  VVRN
Sbjct: 67  IASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRN 126

Query: 132 PNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLI 191
            +FSRYVRFN MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +
Sbjct: 127 TSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFV 186

Query: 192 YGSSSCLLGQIPRLPIVADAADRQV 214
           YG  S LLG+ P +P VADAA RQ+
Sbjct: 187 YGVVSSLLGKTPYIPFVADAAGRQL 208

The following BLAST results are available for this feature:
BLAST of PI0000111 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FM672.8e-6968.75Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ... [more]
O822511.3e-2940.00Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=... [more]
P733878.2e-2135.03Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ... [more]
BLAST of PI0000111 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CPD49.2e-10896.74Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00160... [more]
A0A1S3BM169.2e-10896.74Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103491027 PE=3 SV=1[more]
A0A0A0L6322.7e-9993.06Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_3G047830 PE=3 SV=1[more]
A0A6J1EW921.9e-9787.89Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111438760 PE=3 SV=1[more]
A0A6J1HN421.2e-9687.84Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111465112 PE=3 SV=1[more]
BLAST of PI0000111 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449034.11.9e-10796.74PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo] >KAA0065731.1 protein ... [more]
XP_004148263.15.5e-9993.06protein TIC 20-v, chloroplastic [Cucumis sativus][more]
XP_038905184.19.5e-9992.59protein TIC 20-v, chloroplastic [Benincasa hispida][more]
XP_023553383.13.0e-9788.29protein TIC 20-v, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022932396.14.0e-9787.89protein TIC 20-v, chloroplastic [Cucurbita moschata][more]
BLAST of PI0000111 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G55710.12.0e-7068.75FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G47840.19.0e-3140.00Uncharacterised conserved protein ycf60 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 67..209
e-value: 3.3E-54
score: 183.4
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510PROTEIN TIC 20-II, CHLOROPLASTICcoord: 19..214
NoneNo IPR availablePANTHERPTHR33510:SF11PROTEIN TIC 20-V, CHLOROPLASTICcoord: 19..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0000111.1PI0000111.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid